Back to Long Tests report for BioC 3.15

This page was generated on 2022-10-15 21:00:02 -0400 (Sat, 15 Oct 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.5 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4383
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for biodbChebi on nebbiolo1


To the developers/maintainers of the biodbChebi package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 5/26HostnameOS / ArchCHECK
biodbChebi 1.2.0  (landing page)
Pierrick Roger
Snapshot Date: 2022-10-15 06:55:01 -0400 (Sat, 15 Oct 2022)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: RELEASE_3_15
git_last_commit: 24c8926
git_last_commit_date: 2022-04-26 12:18:32 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.5 LTS) / x86_64  OK  

Summary

Package: biodbChebi
Version: 1.2.0
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.2.0.tar.gz
StartedAt: 2022-10-15 08:02:17 -0400 (Sat, 15 Oct 2022)
EndedAt: 2022-10-15 08:06:09 -0400 (Sat, 15 Oct 2022)
EllapsedTime: 231.2 seconds
RetCode: 0
Status:   OK  
CheckDir: biodbChebi.Rcheck
Warnings: 0

Tests output

biodbChebi.Rcheck/tests/testthat.Rout


R version 4.2.1 (2022-06-23) -- "Funny-Looking Kid"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2022-10-15 08:02:44.387][biodb::testContext]
biodb.INFO [2022-10-15 08:02:44.388][biodb::testContext] ********************************************************************************
biodb.INFO [2022-10-15 08:02:44.389][biodb::testContext] Test context - Generic long tests
biodb.INFO [2022-10-15 08:02:44.390][biodb::testContext] ********************************************************************************
biodb.INFO [2022-10-15 08:02:44.391][biodb::testContext]
biodb.INFO [2022-10-15 08:02:44.404][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.4.2.
biodb.DEBUG[2022-10-15 08:02:44.405][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.15-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-10-15 08:02:44.412][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-10-15 08:02:44.412][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-10-15 08:02:44.413][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-10-15 08:02:44.414][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.416][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-10-15 08:02:44.440][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-10-15 08:02:44.440][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.442][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-10-15 08:02:44.443][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-10-15 08:02:44.444][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.445][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-10-15 08:02:44.446][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-10-15 08:02:44.447][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-10-15 08:02:44.448][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.449][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-10-15 08:02:44.450][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-10-15 08:02:44.451][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-10-15 08:02:44.452][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.453][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-10-15 08:02:44.454][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-10-15 08:02:44.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.457][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-10-15 08:02:44.458][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-10-15 08:02:44.458][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-10-15 08:02:44.459][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.461][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-10-15 08:02:44.462][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-10-15 08:02:44.463][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.465][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-10-15 08:02:44.465][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-10-15 08:02:44.466][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-10-15 08:02:44.467][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.469][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-10-15 08:02:44.469][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-10-15 08:02:44.470][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-10-15 08:02:44.471][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-10-15 08:02:44.472][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-10-15 08:02:44.472][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-10-15 08:02:44.473][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.475][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-10-15 08:02:44.476][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-10-15 08:02:44.476][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.478][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-10-15 08:02:44.479][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-10-15 08:02:44.480][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.482][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-10-15 08:02:44.482][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-10-15 08:02:44.483][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.485][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-10-15 08:02:44.486][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-10-15 08:02:44.486][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.488][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-10-15 08:02:44.489][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-10-15 08:02:44.490][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.492][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-10-15 08:02:44.492][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-10-15 08:02:44.497][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-10-15 08:02:44.498][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.500][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-10-15 08:02:44.501][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-10-15 08:02:44.501][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-10-15 08:02:44.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.506][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-10-15 08:02:44.529][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-10-15 08:02:44.539][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-10-15 08:02:44.540][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:02:44.541][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:02:44.542][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:02:44.542][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:02:44.543][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-15 08:02:44.544][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:02:44.545][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-10-15 08:02:44.545][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:02:44.546][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:02:44.547][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-10-15 08:02:44.548][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:02:44.548][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:02:44.549][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-15 08:02:44.550][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-10-15 08:02:44.550][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-10-15 08:02:44.550][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-10-15 08:02:44.550][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-10-15 08:02:44.550][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-10-15 08:02:44.550][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-15 08:02:44.551][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:02:44.552][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:02:44.552][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:02:44.553][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:02:44.554][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:02:44.554][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:02:44.555][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:02:44.556][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:02:44.557][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:02:44.557][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-15 08:02:44.558][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:02:44.559][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-10-15 08:02:44.560][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-10-15 08:02:44.561][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-10-15 08:02:44.561][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:02:44.562][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:02:44.563][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:02:44.564][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:02:44.564][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-15 08:02:44.565][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:02:44.566][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-10-15 08:02:44.567][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:02:44.572][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:02:44.573][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-10-15 08:02:44.573][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:02:44.574][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:02:44.575][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-15 08:02:44.576][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-10-15 08:02:44.576][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-10-15 08:02:44.576][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-10-15 08:02:44.576][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-10-15 08:02:44.576][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-10-15 08:02:44.576][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-15 08:02:44.577][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:02:44.578][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:02:44.578][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:02:44.579][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:02:44.580][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:02:44.580][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:02:44.581][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:02:44.582][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:02:44.582][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:02:44.583][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-15 08:02:44.584][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:02:44.585][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-10-15 08:02:44.586][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:02:44.587][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-10-15 08:02:44.587][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:02:44.588][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:02:44.589][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:02:44.589][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:02:44.590][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-15 08:02:44.591][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:02:44.591][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-10-15 08:02:44.592][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:02:44.593][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-10-15 08:02:44.594][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-10-15 08:02:44.594][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:02:44.595][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:02:44.596][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-15 08:02:44.597][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:02:44.597][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-15 08:02:44.598][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:02:44.599][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:02:44.600][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:02:44.600][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:02:44.601][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:02:44.602][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:02:44.602][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:02:44.603][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:02:44.604][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:02:44.604][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-15 08:02:44.605][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:02:44.606][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-10-15 08:02:44.607][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:02:44.608][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-10-15 08:02:44.609][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:02:44.609][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:02:44.610][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:02:44.611][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:02:44.612][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-15 08:02:44.612][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:02:44.613][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-10-15 08:02:44.614][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:02:44.614][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-10-15 08:02:44.615][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-10-15 08:02:44.616][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:02:44.617][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:02:44.617][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-15 08:02:44.618][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:02:44.619][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-15 08:02:44.619][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:02:44.620][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:02:44.621][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:02:44.621][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:02:44.622][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:02:44.623][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:02:44.623][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:02:44.624][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:02:44.625][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:02:44.625][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-15 08:02:44.626][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:02:44.629][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-10-15 08:02:44.630][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.631][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.634][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.638][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.641][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.644][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.647][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.650][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.657][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.660][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.663][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.666][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.670][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.673][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.676][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.679][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.683][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.686][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-10-15 08:02:44.689][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-10-15 08:02:44.690][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-10-15 08:02:44.691][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-10-15 08:02:44.692][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-10-15 08:02:44.693][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-10-15 08:02:44.694][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-10-15 08:02:44.695][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-10-15 08:02:44.696][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-10-15 08:02:44.697][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-10-15 08:02:44.698][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-10-15 08:02:44.699][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-10-15 08:02:44.700][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-10-15 08:02:44.701][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-10-15 08:02:44.702][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-10-15 08:02:44.703][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-10-15 08:02:44.704][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-10-15 08:02:44.705][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-10-15 08:02:44.706][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-10-15 08:02:44.712][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-10-15 08:02:44.712][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-10-15 08:02:44.713][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-10-15 08:02:44.714][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-10-15 08:02:44.715][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-10-15 08:02:44.716][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-10-15 08:02:44.717][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-10-15 08:02:44.718][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-10-15 08:02:44.719][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-10-15 08:02:44.720][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-10-15 08:02:44.721][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-10-15 08:02:44.722][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-10-15 08:02:44.723][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-10-15 08:02:44.724][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-10-15 08:02:44.725][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-10-15 08:02:44.726][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-10-15 08:02:44.727][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-10-15 08:02:44.728][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-10-15 08:02:44.729][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-10-15 08:02:44.730][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-10-15 08:02:44.731][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-10-15 08:02:44.732][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-10-15 08:02:44.733][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-10-15 08:02:44.734][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-10-15 08:02:44.735][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-10-15 08:02:44.736][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-10-15 08:02:44.737][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-10-15 08:02:44.738][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-10-15 08:02:44.739][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-10-15 08:02:44.740][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-10-15 08:02:44.741][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-10-15 08:02:44.742][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-10-15 08:02:44.743][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-10-15 08:02:44.744][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-10-15 08:02:44.745][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-10-15 08:02:44.746][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-10-15 08:02:44.747][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-10-15 08:02:44.748][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-10-15 08:02:44.749][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-10-15 08:02:44.750][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-10-15 08:02:44.751][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-10-15 08:02:44.752][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-10-15 08:02:44.753][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-10-15 08:02:44.754][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-10-15 08:02:44.755][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-10-15 08:02:44.756][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-10-15 08:02:44.757][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-10-15 08:02:44.757][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-10-15 08:02:44.758][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-10-15 08:02:44.759][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-10-15 08:02:44.760][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-10-15 08:02:44.761][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-10-15 08:02:44.762][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-10-15 08:02:44.763][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-10-15 08:02:44.764][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-10-15 08:02:44.765][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-10-15 08:02:44.766][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-10-15 08:02:44.767][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-10-15 08:02:44.768][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-10-15 08:02:44.769][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-10-15 08:02:44.770][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-10-15 08:02:44.771][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-10-15 08:02:44.772][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-10-15 08:02:44.773][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-10-15 08:02:44.777][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-10-15 08:02:44.779][initialize] This is biodb version 1.4.2.
biodb.DEBUG[2022-10-15 08:02:44.781][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-10-15 08:02:44.782][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.783][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.787][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:02:44.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:02:44.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.791][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:02:44.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:02:44.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.796][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:02:44.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:02:44.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.800][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:02:44.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:02:44.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.805][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:02:44.806][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:02:44.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.809][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:02:44.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:02:44.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.814][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:02:44.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:02:44.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.818][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:02:44.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:02:44.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.822][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:02:44.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:02:44.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.827][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:02:44.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:02:44.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.831][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:02:44.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:02:44.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.836][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:02:44.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:02:44.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:02:44.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:02:44.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.849][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:02:44.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:02:44.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.854][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:02:44.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:02:44.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.858][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:02:44.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:02:44.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:02:44.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:02:44.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:02:44.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:44.868][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.15-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2022-10-15 08:02:44.874][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2022-10-15 08:02:44.875][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-10-15 08:02:44.876][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-10-15 08:02:44.877][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:02:44.877][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:02:44.878][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:02:44.879][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:02:44.880][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-10-15 08:02:44.880][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2022-10-15 08:02:44.881][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-10-15 08:02:44.882][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:02:44.883][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:02:44.883][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2022-10-15 08:02:44.884][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:02:44.885][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2022-10-15 08:02:44.885][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2022-10-15 08:02:44.885][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2022-10-15 08:02:44.885][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2022-10-15 08:02:44.885][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2022-10-15 08:02:44.885][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2022-10-15 08:02:44.885][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2022-10-15 08:02:44.885][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2022-10-15 08:02:44.885][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2022-10-15 08:02:44.885][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2022-10-15 08:02:44.885][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2022-10-15 08:02:44.886][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-10-15 08:02:44.886][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-10-15 08:02:44.886][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-10-15 08:02:44.886][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-10-15 08:02:44.887][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-10-15 08:02:44.888][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:02:44.888][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:02:44.889][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:02:44.890][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:02:44.891][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:02:44.891][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:02:44.892][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:02:44.892][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2022-10-15 08:02:44.893][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:02:44.893][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:02:44.894][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-10-15 08:02:44.895][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2022-10-15 08:02:44.895][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2022-10-15 08:02:44.899][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-10-15 08:02:44.900][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-10-15 08:02:44.901][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2022-10-15 08:02:44.902][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-10-15 08:02:44.903][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-10-15 08:02:44.904][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-10-15 08:02:44.923][super$initialize] Initialize connector chebi.
biodb.DEBUG[2022-10-15 08:02:44.924][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2022-10-15 08:02:44.927][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2022-10-15 08:02:44.930][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2022-10-15 08:02:44.933][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-10-15 08:02:44.933][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-10-15 08:02:44.934][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2022-10-15 08:02:44.935][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2022-10-15 08:02:44.947][biodb::testThat]
biodb.INFO [2022-10-15 08:02:44.948][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2022-10-15 08:02:44.949][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:02:44.949][biodb::testThat]
biodb.TRACE[2022-10-15 08:02:44.952][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.15-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2022-10-15 08:02:44.955][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:02:44.957][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:02:44.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:02:44.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:02:44.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:02:44.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:44.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:44.976][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:44.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:02:44.984][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:44.985][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:44.986][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:44.986][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:44.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.029][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:02:45.030][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:02:45.031][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.032][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.065][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:02:45.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:02:45.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.075][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:02:45.076][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:02:45.077][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.077][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.079][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:02:45.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:02:45.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.084][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:45.085][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:45.086][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.087][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:45.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:45.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.093][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:45.094][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:45.094][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.095][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:45.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:45.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.101][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:45.102][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:45.103][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.104][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.105][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:45.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:45.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.110][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:02:45.111][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:45.112][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.112][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.113][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:02:45.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:45.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.119][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:45.120][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:45.120][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.121][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:45.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:45.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.127][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:45.128][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:45.129][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.130][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.131][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:45.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:45.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.136][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:02:45.137][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:02:45.137][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.138][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.139][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:02:45.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:02:45.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.144][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:02:45.145][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:02:45.146][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.146][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.147][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:02:45.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:02:45.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:02:45.225][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2022-10-15 08:02:45.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:45.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:45.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.232][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:45.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:45.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:45.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:45.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.252][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:45.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:45.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:45.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:45.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:45.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:45.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.261][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:02:45.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:02:45.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.267][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:02:45.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:02:45.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.270][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-10-15 08:02:45.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-10-15 08:02:45.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.273][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-10-15 08:02:45.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-10-15 08:02:45.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.346][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.347][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.347][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.348][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.365][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.366][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.366][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.367][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.375][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:45.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:45.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.382][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:45.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:45.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.385][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:45.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:45.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.387][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:45.388][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:45.389][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.389][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.390][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:45.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:45.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.397][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:02:45.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:02:45.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.400][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:02:45.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:02:45.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.403][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:02:45.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:02:45.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.406][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:02:45.406][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:02:45.407][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.408][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.409][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:02:45.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:02:45.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:45.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:45.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:45.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:45.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:45.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:45.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.424][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:45.425][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:45.426][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.426][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:45.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:45.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:45.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:45.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:45.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:45.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:45.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:45.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.443][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:45.444][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:45.444][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.445][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:45.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:45.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.453][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:02:45.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:02:45.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.456][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:02:45.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:02:45.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.459][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:02:45.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:02:45.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.462][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:02:45.462][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:02:45.463][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.464][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.465][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:02:45.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:02:45.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.472][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:02:45.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:02:45.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.475][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:02:45.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:02:45.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.477][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:02:45.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:02:45.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.480][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:02:45.481][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:02:45.482][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.483][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.483][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:02:45.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:02:45.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.493][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:45.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:45.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.496][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:45.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:45.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.499][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:45.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:45.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.502][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:45.503][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:45.504][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.504][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.505][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:45.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:45.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.512][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:02:45.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:02:45.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.515][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:02:45.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:02:45.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.518][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:02:45.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:02:45.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.521][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:02:45.521][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:02:45.522][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.523][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.524][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:02:45.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:02:45.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.531][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:45.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:45.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.534][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:45.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:45.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.536][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:45.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:45.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.539][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:45.540][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:45.541][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.541][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:45.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:45.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:45.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:45.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.552][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:45.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:45.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.555][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:45.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:45.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.558][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:45.559][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:45.559][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.560][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.561][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:45.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:45.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.568][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.569][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.569][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.570][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.574][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:02:45.574][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:02:45.575][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.576][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.579][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:02:45.580][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:02:45.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.581][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.585][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:45.585][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:45.586][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.587][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.590][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:45.594][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:45.595][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.595][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.599][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:45.599][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:45.600][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.601][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.604][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:45.605][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:45.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.606][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.609][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:45.610][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:45.611][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.612][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.615][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:02:45.616][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:02:45.616][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.617][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.621][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:45.621][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:45.622][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.623][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.626][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:02:45.627][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:02:45.628][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.628][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.640][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.15-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2022-10-15 08:02:45.665][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:02:45.666][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:02:45.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:02:45.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:02:45.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:02:45.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:45.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:45.673][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:45.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:02:45.675][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.676][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.677][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.677][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.697][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:02:45.698][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:02:45.698][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.699][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.700][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:02:45.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:02:45.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.705][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:02:45.705][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:02:45.706][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.707][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.708][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:02:45.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:02:45.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.713][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:45.713][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:45.714][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.715][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.716][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:45.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:45.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.720][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:45.721][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:45.722][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.722][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.723][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:45.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:45.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.728][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:45.729][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:45.729][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.730][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.731][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:45.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:45.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.736][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:02:45.736][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:45.737][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.738][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.739][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:02:45.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:45.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.743][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:45.744][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:45.745][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.745][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:45.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:45.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.751][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:45.752][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:45.752][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.753][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.754][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:45.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:45.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.759][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:02:45.759][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:02:45.760][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.761][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.762][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:02:45.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:02:45.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.766][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:02:45.767][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:02:45.768][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.768][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.769][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:02:45.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:02:45.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:02:45.807][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2022-10-15 08:02:45.822][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:45.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:45.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:45.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:45.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:45.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:45.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.831][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:45.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:45.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:45.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:45.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:45.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:45.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.839][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:02:45.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:02:45.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.842][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:02:45.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:02:45.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.845][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-10-15 08:02:45.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-10-15 08:02:45.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.848][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-10-15 08:02:45.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-10-15 08:02:45.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.912][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.912][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.913][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.914][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:45.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:45.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.930][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.931][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.932][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.932][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:45.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.940][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:45.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:45.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.943][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:45.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:45.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.946][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:45.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:45.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.949][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:45.949][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:45.950][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.951][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.951][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:45.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:45.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.959][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:02:45.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:02:45.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.961][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:02:45.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:02:45.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.964][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:02:45.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:02:45.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.967][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:02:45.968][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:02:45.969][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.969][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.970][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:02:45.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:02:45.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.977][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:02:45.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:45.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:45.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:45.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:45.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:45.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.986][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:02:45.987][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:45.987][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.988][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.989][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:02:45.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:45.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:45.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:45.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:46.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:46.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:46.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:46.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:46.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:46.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.007][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:46.008][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:46.009][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.009][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:46.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:46.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:46.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:46.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:46.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:46.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:46.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:46.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.026][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:46.026][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:46.027][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.028][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:46.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:46.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.036][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:02:46.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:02:46.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.039][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:02:46.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:02:46.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.041][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:02:46.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:02:46.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.044][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:02:46.045][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:02:46.046][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.046][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.047][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:02:46.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:02:46.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.054][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:02:46.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:02:46.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.057][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:02:46.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:02:46.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.060][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:02:46.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:02:46.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.063][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:02:46.064][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:02:46.064][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.065][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.066][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:02:46.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:02:46.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.073][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:46.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:46.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.076][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:46.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:46.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.079][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:46.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:46.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.081][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:46.082][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:46.083][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.084][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.084][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:46.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:46.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.091][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:02:46.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:02:46.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.094][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:02:46.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:02:46.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.097][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:02:46.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:02:46.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.100][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:02:46.101][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:02:46.101][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.102][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.106][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:02:46.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:02:46.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.113][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:46.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:46.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.116][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:46.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:46.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.119][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:46.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:46.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.121][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:46.122][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:46.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.123][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.124][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:46.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:46.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.131][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:46.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:46.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:46.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:46.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.137][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:46.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:46.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.140][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:46.141][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:46.141][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.142][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.143][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:46.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:46.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.150][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:46.151][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:46.151][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.152][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.155][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:02:46.156][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:02:46.157][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.158][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.161][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:02:46.162][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:02:46.162][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.163][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.166][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:46.167][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:46.168][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.169][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.172][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:46.173][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:46.173][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.174][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.178][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:46.179][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:46.179][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.180][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.183][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:46.184][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:46.185][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.186][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.189][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:46.190][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:46.190][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.191][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.195][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:02:46.195][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:02:46.196][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.197][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.200][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:46.201][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:46.202][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.202][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.209][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:02:46.210][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:02:46.211][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.211][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.215][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.15-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2022-10-15 08:02:46.218][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:02:46.219][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:02:46.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:02:46.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:02:46.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:02:46.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:46.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:46.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:46.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:02:46.228][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:46.229][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:46.230][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.230][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:46.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:46.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.236][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:02:46.237][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:02:46.238][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.239][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.240][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:02:46.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:02:46.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.245][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:02:46.245][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:02:46.246][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.247][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.248][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:02:46.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:02:46.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.253][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:46.253][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:46.254][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.255][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.256][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:46.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:46.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.261][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:46.261][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:46.262][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.263][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.264][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:46.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:46.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.269][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:46.269][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:46.270][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.271][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.272][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:46.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:46.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.277][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:02:46.277][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:46.278][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.279][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.280][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:02:46.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:46.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.285][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:46.285][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:46.286][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.287][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:46.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:46.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.293][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:46.293][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:46.294][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.295][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.296][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:46.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:46.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.300][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:02:46.301][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:02:46.302][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.303][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.303][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:02:46.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:02:46.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.308][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:02:46.309][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:02:46.310][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.310][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.311][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:02:46.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:02:46.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:46.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:46.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:46.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:46.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:46.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:46.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:46.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:46.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:46.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:46.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:46.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:46.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:46.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:46.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:46.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:46.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:46.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:46.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:46.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:46.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:02:46.350][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2022-10-15 08:02:46.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:46.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:46.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.356][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:46.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:46.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:46.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:46.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.362][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:46.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:46.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:46.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:46.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:46.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:46.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.371][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:02:46.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:02:46.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.374][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:02:46.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:02:46.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.377][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-10-15 08:02:46.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-10-15 08:02:46.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.380][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-10-15 08:02:46.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-10-15 08:02:46.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:46.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:46.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:46.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:46.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:46.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:46.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:46.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:46.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:46.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:46.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:46.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:46.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:46.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:46.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:46.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:46.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:46.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:46.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:46.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:46.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:46.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:46.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:46.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:46.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:46.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:46.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:46.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:46.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.437][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:46.438][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:46.439][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.440][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:46.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:46.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.447][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:02:46.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:02:46.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.450][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:02:46.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:02:46.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.453][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:02:46.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:02:46.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.456][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:02:46.457][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:02:46.457][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.458][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.459][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:02:46.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:02:46.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.466][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:46.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:46.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:46.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:46.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:46.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:46.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.475][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:46.476][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:46.476][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.477][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.478][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:46.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:46.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:46.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:46.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.488][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:46.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:46.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.491][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:46.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:46.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.493][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:46.494][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:46.495][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.496][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.496][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:46.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:46.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.504][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:46.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:46.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.506][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:46.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:46.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.509][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:46.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:46.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.512][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:46.513][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:46.514][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.514][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.515][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:46.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:46.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:46.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:46.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:46.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:46.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:46.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:46.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.531][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:46.532][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:46.532][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.533][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:46.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:46.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:46.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:46.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:46.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:46.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:46.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:46.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.553][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:46.554][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:46.554][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.555][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:46.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:46.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.563][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:02:46.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:02:46.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.566][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:02:46.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:02:46.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.569][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:02:46.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:02:46.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.572][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:02:46.573][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:02:46.573][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.574][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.575][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:02:46.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:02:46.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.582][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:02:46.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:02:46.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.585][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:02:46.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:02:46.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.588][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:02:46.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:02:46.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.590][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:02:46.591][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:02:46.592][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.593][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.593][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:02:46.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:02:46.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.601][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:46.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:46.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.603][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:46.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:46.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.606][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:46.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:46.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.609][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:46.610][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:46.611][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.611][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.612][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:46.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:46.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.619][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:02:46.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:02:46.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.622][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:02:46.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:02:46.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.625][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:02:46.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:02:46.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.628][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:02:46.629][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:02:46.629][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.630][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.631][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:02:46.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:02:46.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.638][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:46.639][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:46.639][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.640][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.647][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:02:46.648][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:02:46.648][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.649][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.652][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:02:46.653][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:02:46.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.654][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.658][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:46.658][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:46.659][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.660][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.663][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:46.664][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:46.665][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.665][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.669][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:46.669][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:46.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.671][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.674][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:46.675][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:46.676][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.676][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.680][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:46.680][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:46.681][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.682][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.685][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:02:46.686][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:02:46.687][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.687][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.691][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:46.691][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:46.692][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.693][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:46.696][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:02:46.697][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:02:46.698][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:46.698][ef$get] fields variable is a list.
biodb.INFO [2022-10-15 08:02:46.703][biodb::testThat]
biodb.INFO [2022-10-15 08:02:46.703][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2022-10-15 08:02:46.704][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:02:46.705][biodb::testThat]
biodb.DEBUG[2022-10-15 08:02:46.706][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2022-10-15 08:02:46.712][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2022-10-15 08:02:46.714][cch$loadFileContent] Trying to load 3 files from cache: [3]: "15440, 2528, 7799".
biodb.TRACE[2022-10-15 08:02:46.716][cch$loadFileContent] file.exist = [3]: "FALSE, TRUE, TRUE".
biodb.TRACE[2022-10-15 08:02:46.717][loadFileContents] Loaded 2 files from cache: [2]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2022-10-15 08:02:46.718][conn$getEntryContent] 2 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:02:46.719][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:02:46.719][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:02:46.720][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:02:46.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:02:46.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:02:46.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:02:46.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:46.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:46.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:46.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:46.731][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.DEBUG[2022-10-15 08:02:46.749][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:02:46.750][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:02:46.751][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.TRACE[2022-10-15 08:02:47.844][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
biodb.DEBUG[2022-10-15 08:02:48.671][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:02:48.677][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5c6fb88c946e8568cc03c0d73dc5603e.content"
biodb.TRACE[2022-10-15 08:02:48.694][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5c6fb88c946e8568cc03c0d73dc5603e.request"
biodb.TRACE[2022-10-15 08:02:48.702][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml"
biodb.DEBUG[2022-10-15 08:02:48.705][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:02:48.721][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2022-10-15 08:02:48.722][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2022-10-15 08:02:48.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:02:48.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:02:48.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:02:48.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:48.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:48.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:48.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:02:48.733][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:48.734][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:48.735][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.736][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:48.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:48.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.742][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:02:48.743][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:02:48.743][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.744][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.745][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:02:48.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:02:48.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.758][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:02:48.759][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:02:48.759][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.760][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.761][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:02:48.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:02:48.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.766][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:48.767][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:48.767][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.768][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:48.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:48.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.774][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:48.775][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:48.776][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.776][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.777][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:48.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:48.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.782][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:48.783][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:48.784][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.785][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.786][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:48.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:48.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.791][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:02:48.792][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:48.793][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.793][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.802][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:02:48.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:48.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.819][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:48.820][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:48.821][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.822][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:48.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:48.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.831][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:48.832][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:48.833][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.834][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.836][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:48.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:48.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.843][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:02:48.844][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:02:48.846][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.847][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.848][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:02:48.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:02:48.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.855][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:02:48.856][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:02:48.857][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.858][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.859][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:02:48.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:02:48.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:48.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:48.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:48.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:48.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:48.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:48.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:48.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:48.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:48.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:48.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:48.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:48.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:48.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:48.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:02:48.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:02:48.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:02:48.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:02:48.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:48.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:48.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:48.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:02:48.949][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:48.950][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:48.952][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.953][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:48.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:48.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.961][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:02:48.962][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:02:48.963][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.964][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.965][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:02:48.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:02:48.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.971][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:02:48.972][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:02:48.973][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.973][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.974][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:02:48.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:02:48.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.979][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:48.980][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:48.981][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.981][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:48.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:48.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.987][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:48.988][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:48.989][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.989][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:48.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:48.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.995][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:48.996][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:48.996][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:48.997][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:48.998][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:48.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:49.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.003][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:02:49.003][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:49.004][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.005][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.006][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:02:49.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:49.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.010][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:49.011][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:49.012][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.012][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:49.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:49.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.022][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:49.022][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:49.023][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.024][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.025][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:49.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:49.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.029][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:02:49.030][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:02:49.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.031][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.032][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:02:49.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:02:49.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.036][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:02:49.037][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:02:49.038][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.038][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.039][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:02:49.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:02:49.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:49.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:49.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:49.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:49.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:49.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:49.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:49.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:49.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:49.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:49.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:49.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:49.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:49.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:49.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:02:49.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:02:49.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:02:49.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:02:49.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:49.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:49.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:49.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:02:49.074][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:49.075][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:49.075][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.076][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:49.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:49.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.082][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:02:49.082][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:02:49.083][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.084][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.084][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:02:49.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:02:49.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.089][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:02:49.090][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:02:49.090][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.091][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.092][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:02:49.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:02:49.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.097][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:49.097][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:49.098][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.099][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.100][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:49.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:49.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.128][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:49.129][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:49.129][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.130][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.131][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:49.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:49.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.136][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:49.136][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:49.137][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.138][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.138][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:49.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:49.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.143][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:02:49.144][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:49.145][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.145][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.146][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:02:49.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:49.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.151][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:49.151][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:49.152][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.153][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:49.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:49.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.158][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:49.159][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:49.160][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.161][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.162][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:49.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:49.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.166][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:02:49.167][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:02:49.168][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.168][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.169][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:02:49.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:02:49.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.174][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:02:49.174][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:02:49.175][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.176][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.177][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:02:49.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:02:49.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:49.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:49.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:49.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:49.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:49.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:49.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:49.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:49.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:49.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:49.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:49.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:49.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:49.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:49.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:49.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:49.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:49.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:49.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:49.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:49.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:49.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:49.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:49.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:49.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:49.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:49.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:49.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:49.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:49.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:49.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:49.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:49.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:02:49.232][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2022-10-15 08:02:49.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-10-15 08:02:49.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-10-15 08:02:49.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:02:49.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:02:49.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:02:49.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:02:49.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-10-15 08:02:49.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-10-15 08:02:49.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:02:49.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:02:49.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:02:49.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:02:49.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-10-15 08:02:49.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-10-15 08:02:49.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:02:49.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:02:49.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:02:49.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:02:49.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-10-15 08:02:49.269][biodb::testThat]
biodb.INFO [2022-10-15 08:02:49.269][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2022-10-15 08:02:49.270][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:02:49.271][biodb::testThat]
biodb.TRACE[2022-10-15 08:02:49.273][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:49.273][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:49.274][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.275][ef$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:02:49.276][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2022-10-15 08:02:49.298][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:49.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:49.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.300][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:49.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:49.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:49.303][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:49.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:49.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:49.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:02:49.307][function(conn, opt)] With value "squalene".
biodb.DEBUG[2022-10-15 08:02:49.327][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2022-10-15 08:02:49.329][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:02:49.340][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2022-10-15 08:02:49.341][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:02:49.342][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2022-10-15 08:02:49.345][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:02:49.355][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:02:49.356][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:02:49.369][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL%20NAMES&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-10-15 08:02:49.927][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL%20NAMES&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-10-15 08:02:50.480][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:02:50.485][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content"
biodb.TRACE[2022-10-15 08:02:50.493][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.request"
biodb.DEBUG[2022-10-15 08:02:50.497][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2022-10-15 08:02:50.506][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:50.507][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:50.507][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:50.508][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:50.509][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:50.510][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:50.510][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:50.511][ef$get] fields variable is a list.
biodb.INFO [2022-10-15 08:02:50.512][biodb::testThat]
biodb.INFO [2022-10-15 08:02:50.513][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2022-10-15 08:02:50.514][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:02:50.515][biodb::testThat]
biodb.TRACE[2022-10-15 08:02:50.540][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:50.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:50.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:50.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:50.543][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:50.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:50.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:50.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:50.546][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:50.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:50.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:50.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:02:50.587][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:02:50.593][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:02:50.594][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-10-15 08:02:50.595][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:02:50.596][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2022-10-15 08:02:50.605][biodb::testThat]
biodb.INFO [2022-10-15 08:02:50.606][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2022-10-15 08:02:50.607][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:02:50.607][biodb::testThat]
biodb.TRACE[2022-10-15 08:02:50.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:50.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:50.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:50.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:50.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:50.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:50.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:50.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:50.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:50.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:50.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:50.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:50.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:50.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:50.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:50.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:50.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:50.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:50.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:50.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:50.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:50.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:50.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:50.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:50.635][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:02:50.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:02:50.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:50.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:50.637][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:02:50.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:02:50.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:50.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:50.640][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-10-15 08:02:50.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-10-15 08:02:50.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:50.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:50.643][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-10-15 08:02:50.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-10-15 08:02:50.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:50.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:50.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:50.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:50.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:50.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:50.656][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:50.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:50.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:50.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:50.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:50.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:50.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:50.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:50.662][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:50.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:50.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:50.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:50.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:50.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:50.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:50.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:50.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:50.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:50.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:50.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:50.674][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:02:50.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:02:50.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:50.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:50.677][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:02:50.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:02:50.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:50.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:50.680][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-10-15 08:02:50.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-10-15 08:02:50.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:50.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:50.682][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-10-15 08:02:50.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-10-15 08:02:50.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:50.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-10-15 08:02:50.687][biodb::testThat]
biodb.INFO [2022-10-15 08:02:50.688][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2022-10-15 08:02:50.688][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:02:50.689][biodb::testThat]
biodb.INFO [2022-10-15 08:02:50.693][biodb::testThat]
biodb.INFO [2022-10-15 08:02:50.693][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2022-10-15 08:02:50.694][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:02:50.695][biodb::testThat]
biodb.INFO [2022-10-15 08:02:50.699][biodb::testThat]
biodb.INFO [2022-10-15 08:02:50.700][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2022-10-15 08:02:50.700][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:02:50.701][biodb::testThat]
biodb.DEBUG[2022-10-15 08:02:50.703][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2022-10-15 08:02:51.857][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2022-10-15 08:02:53.178][biodb::testThat]
biodb.INFO [2022-10-15 08:02:53.179][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2022-10-15 08:02:53.180][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:02:53.180][biodb::testThat]
biodb.DEBUG[2022-10-15 08:02:53.605][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2022-10-15 08:02:54.059][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:54.060][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:54.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:54.061][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:54.062][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:54.063][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:54.063][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:54.064][ef$get] fields variable is a list.
biodb.INFO [2022-10-15 08:02:54.065][biodb::testThat]
biodb.INFO [2022-10-15 08:02:54.066][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2022-10-15 08:02:54.067][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:02:54.068][biodb::testThat]
biodb.TRACE[2022-10-15 08:02:54.086][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:54.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:54.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:54.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:54.089][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:54.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:54.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:54.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:54.092][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:54.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:54.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:54.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:02:54.149][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:02:54.151][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:02:54.152][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-10-15 08:02:54.157][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:02:54.158][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-10-15 08:02:54.207][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:02:54.209][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:02:54.210][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-10-15 08:02:54.211][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:02:54.211][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2022-10-15 08:02:54.225][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:02:54.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:02:54.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:54.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:54.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:54.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:54.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:54.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:54.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:54.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:54.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:54.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:54.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:54.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:54.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:54.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:54.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:54.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:54.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:54.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:54.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:54.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:54.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:54.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:02:54.273][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:02:54.275][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:02:54.276][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:02:54.277][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-10-15 08:02:54.785][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-10-15 08:02:55.215][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:02:55.220][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content"
biodb.TRACE[2022-10-15 08:02:55.228][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.request"
biodb.DEBUG[2022-10-15 08:02:55.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:02:55.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:02:55.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:02:55.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:55.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:55.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:55.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:55.240][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2022-10-15 08:02:55.276][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:02:55.277][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2022-10-15 08:02:55.278][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:02:55.278][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:02:55.279][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:02:55.280][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:02:55.281][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:02:55.281][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:02:55.290][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:02:55.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:02:55.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:02:55.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:55.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:55.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:55.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:55.298][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.DEBUG[2022-10-15 08:02:55.300][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:02:55.301][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:02:55.302][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.TRACE[2022-10-15 08:02:55.707][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288).
biodb.DEBUG[2022-10-15 08:02:56.151][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:02:56.156][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.content"
biodb.TRACE[2022-10-15 08:02:56.170][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.request"
biodb.TRACE[2022-10-15 08:02:56.176][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml"
biodb.DEBUG[2022-10-15 08:02:56.179][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:02:56.190][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:02:56.191][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:02:56.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:02:56.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:02:56.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:02:56.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:56.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:56.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:56.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:02:56.201][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:56.201][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:56.202][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:56.203][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:56.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:56.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:56.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:56.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:56.208][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:02:56.209][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:02:56.210][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:56.210][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:56.211][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:02:56.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:02:56.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:56.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:56.216][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:02:56.217][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:02:56.218][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:56.218][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:56.219][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:02:56.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:02:56.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:56.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:56.224][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:56.225][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:56.225][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:56.226][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:56.227][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:56.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:56.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:56.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:56.232][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:56.232][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:56.233][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:56.234][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:56.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:56.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:56.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:56.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:56.242][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:56.243][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:56.244][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:56.245][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:56.246][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:02:56.247][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:56.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:56.248][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:56.249][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:02:56.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:56.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:56.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:56.253][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:56.254][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:56.255][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:56.255][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:56.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:56.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:56.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:56.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:56.261][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:56.261][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:56.262][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:56.263][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:56.264][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:56.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:56.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:56.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:56.268][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:02:56.269][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:02:56.270][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:56.270][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:56.271][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:02:56.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:02:56.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:56.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:56.276][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:02:56.277][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:02:56.277][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:56.278][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:56.279][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:02:56.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:02:56.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:56.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:56.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:56.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:56.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:56.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:56.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:56.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:56.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:56.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:56.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:56.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:56.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:56.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:56.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:56.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:56.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:56.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:56.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:56.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:56.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:56.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:56.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:56.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:56.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:56.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:56.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:56.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:56.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:56.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:56.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:56.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:56.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:56.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:56.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:56.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:56.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:56.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:56.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:56.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:56.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:56.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:02:56.314][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2022-10-15 08:02:56.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:56.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:56.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:56.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:56.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:56.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:56.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:56.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:56.330][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:56.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:56.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:56.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:02:56.333][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:02:56.335][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:02:56.336][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:02:56.337][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-10-15 08:02:56.746][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-10-15 08:02:57.168][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:02:57.173][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content"
biodb.TRACE[2022-10-15 08:02:57.181][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.request"
biodb.DEBUG[2022-10-15 08:02:57.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:02:57.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:02:57.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:02:57.204][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:57.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:57.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:57.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:02:57.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:57.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:57.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:57.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:57.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:57.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:57.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:57.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:57.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:57.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:57.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:57.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:02:57.216][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:02:57.218][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:02:57.219][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:02:57.220][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-10-15 08:02:57.623][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-10-15 08:02:58.067][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:02:58.072][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content"
biodb.TRACE[2022-10-15 08:02:58.080][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.request"
biodb.DEBUG[2022-10-15 08:02:58.116][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:02:58.119][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:02:58.119][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-10-15 08:02:58.120][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:02:58.121][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-10-15 08:02:58.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:02:58.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:02:58.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:02:58.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:58.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:58.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:58.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:02:58.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:58.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:58.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:58.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:58.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:58.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:58.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:58.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:58.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:58.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:58.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:58.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:02:58.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:02:58.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:02:58.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:02:58.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:58.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:58.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:58.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:58.161][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2022-10-15 08:02:58.162][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:02:58.163][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2022-10-15 08:02:58.164][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:02:58.164][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:02:58.165][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:02:58.166][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:02:58.167][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:02:58.167][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:02:58.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:02:58.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:02:58.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:02:58.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:58.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:58.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:58.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:58.177][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.DEBUG[2022-10-15 08:02:58.178][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:02:58.179][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:02:58.180][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.TRACE[2022-10-15 08:02:58.587][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747).
biodb.DEBUG[2022-10-15 08:02:59.027][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:02:59.032][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.content"
biodb.TRACE[2022-10-15 08:02:59.040][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.request"
biodb.TRACE[2022-10-15 08:02:59.047][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml"
biodb.DEBUG[2022-10-15 08:02:59.056][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:02:59.066][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:02:59.067][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:02:59.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:02:59.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:02:59.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:02:59.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:59.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:59.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:59.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:02:59.077][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:59.078][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:59.079][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:59.080][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:59.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:59.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:59.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:59.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:59.085][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:02:59.086][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:02:59.087][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:59.087][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:59.088][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:02:59.089][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:02:59.090][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:59.090][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:59.091][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:02:59.092][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:02:59.093][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:59.093][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:59.094][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:02:59.095][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:02:59.096][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:59.096][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:59.097][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:59.098][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:02:59.099][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:59.100][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:59.100][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:02:59.101][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:59.102][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:59.103][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:59.103][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:59.104][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:02:59.105][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:59.106][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:59.106][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:59.107][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:59.108][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:59.109][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:59.110][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:02:59.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:02:59.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:59.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:59.114][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:02:59.115][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:02:59.116][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:59.116][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:59.117][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:02:59.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:02:59.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:59.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:59.122][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:02:59.123][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:02:59.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:59.124][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:59.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:59.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:59.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:59.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:59.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:59.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:59.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:59.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:59.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:59.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:59.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:59.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:59.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:02:59.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:02:59.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:59.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:59.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:59.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:59.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:59.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:59.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:59.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:59.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:59.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:59.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:59.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:59.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:59.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:59.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:59.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:59.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:59.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:59.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:59.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:59.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:59.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:59.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:02:59.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:02:59.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:59.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:02:59.159][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2022-10-15 08:02:59.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:59.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:59.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:59.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:59.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:59.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:59.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:59.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:59.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:59.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:59.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:59.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:59.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:59.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:59.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:59.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:02:59.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:59.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:02:59.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:02:59.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:02:59.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:02:59.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:02:59.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:02:59.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:59.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:59.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:59.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:59.182][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2022-10-15 08:02:59.183][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:02:59.184][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2022-10-15 08:02:59.185][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:02:59.186][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:02:59.186][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:02:59.187][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:02:59.188][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:02:59.189][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:02:59.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:02:59.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:02:59.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:02:59.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:02:59.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:02:59.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:02:59.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:02:59.198][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.DEBUG[2022-10-15 08:02:59.200][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:02:59.201][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:02:59.202][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.TRACE[2022-10-15 08:02:59.613][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285).
biodb.DEBUG[2022-10-15 08:03:00.035][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:00.041][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.content"
biodb.TRACE[2022-10-15 08:03:00.048][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.request"
biodb.TRACE[2022-10-15 08:03:00.055][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml"
biodb.DEBUG[2022-10-15 08:03:00.058][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:00.069][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:00.070][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:00.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:00.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:00.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:00.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:00.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:00.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:00.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:00.223][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:00.224][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:00.225][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:00.225][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:00.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:00.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:00.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:00.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:00.231][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:00.232][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:00.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:00.233][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:00.234][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:00.235][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:00.235][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:00.236][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:00.237][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:00.238][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:00.238][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:00.239][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:00.240][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:00.241][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:00.241][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:00.242][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:00.243][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:00.243][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:00.244][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:00.245][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:00.245][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:00.246][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:00.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:00.248][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:00.248][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:00.249][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:00.250][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:00.250][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:00.251][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:00.252][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:00.253][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:00.253][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:00.254][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:00.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:00.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:00.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:00.259][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:00.260][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:00.260][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:00.261][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:00.262][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:00.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:00.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:00.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:00.267][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:00.267][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:00.268][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:00.269][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:00.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:00.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:00.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:00.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:00.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:00.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:00.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:00.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:00.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:00.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:00.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:00.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:00.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:00.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:00.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:00.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:00.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:00.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:00.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:00.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:00.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:00.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:00.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:00.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:00.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:00.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:00.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:00.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:00.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:00.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:00.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:00.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:00.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:00.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:00.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:00.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:00.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:00.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:00.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:00.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:00.299][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2022-10-15 08:03:00.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:00.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:00.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:00.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:00.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:00.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:00.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:00.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:00.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:00.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:00.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:00.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:00.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:00.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:00.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:00.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:00.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:00.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:00.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:00.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:00.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:00.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:00.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:00.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:00.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:00.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:00.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:00.325][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2022-10-15 08:03:00.326][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:00.327][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2022-10-15 08:03:00.328][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:00.329][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:00.330][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:00.330][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:00.331][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:00.332][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:00.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:00.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:00.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:00.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:00.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:00.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:00.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:00.343][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.DEBUG[2022-10-15 08:03:00.345][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:00.346][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:00.347][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.TRACE[2022-10-15 08:03:00.766][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174).
biodb.DEBUG[2022-10-15 08:03:01.189][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:01.195][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.content"
biodb.TRACE[2022-10-15 08:03:01.203][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.request"
biodb.TRACE[2022-10-15 08:03:01.211][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml"
biodb.DEBUG[2022-10-15 08:03:01.214][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:01.226][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:01.227][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:01.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:01.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:01.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:01.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:01.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:01.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:01.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:01.238][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:01.239][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:01.240][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:01.240][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:01.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:01.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:01.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:01.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:01.247][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:01.248][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:01.248][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:01.249][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:01.250][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:01.251][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:01.252][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:01.252][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:01.253][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:01.254][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:01.255][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:01.256][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:01.257][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:01.258][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:01.258][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:01.259][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:01.260][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:01.261][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:01.262][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:01.262][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:01.263][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:01.264][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:01.265][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:01.266][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:01.266][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:01.267][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:01.268][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:01.269][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:01.270][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:01.271][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:01.271][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:01.272][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:01.273][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:01.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:01.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:01.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:01.284][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:01.285][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:01.286][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:01.286][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:01.287][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:01.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:01.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:01.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:01.292][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:01.292][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:01.293][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:01.294][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:01.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:01.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:01.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:01.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:01.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:01.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:01.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:01.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:01.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:01.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:01.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:01.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:01.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:01.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:01.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:01.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:01.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:01.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:01.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:01.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:01.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:01.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:01.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:01.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:01.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:01.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:01.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:01.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:01.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:01.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:01.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:01.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:01.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:01.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:01.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:01.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:01.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:01.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:01.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:01.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:01.324][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2022-10-15 08:03:01.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:01.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:01.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:01.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:01.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:01.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:01.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:01.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:01.330][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:01.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:01.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:01.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:01.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:01.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:01.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:01.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:01.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:01.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:01.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:01.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:01.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:01.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:01.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:01.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:01.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:01.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:01.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:01.346][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2022-10-15 08:03:01.347][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:01.348][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2022-10-15 08:03:01.349][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:01.350][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:01.351][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:01.351][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:01.352][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:01.353][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:01.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:01.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:01.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:01.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:01.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:01.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:01.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:01.362][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.DEBUG[2022-10-15 08:03:01.364][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:01.365][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:01.366][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.TRACE[2022-10-15 08:03:01.770][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441).
biodb.DEBUG[2022-10-15 08:03:02.191][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:02.196][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.content"
biodb.TRACE[2022-10-15 08:03:02.204][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.request"
biodb.TRACE[2022-10-15 08:03:02.211][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml"
biodb.DEBUG[2022-10-15 08:03:02.214][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:02.224][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:02.225][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:02.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:02.227][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:02.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:02.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:02.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:02.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:02.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:02.235][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:02.236][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:02.236][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.237][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:02.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:02.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:02.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:02.242][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:02.243][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:02.244][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.244][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:02.245][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:02.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:02.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:02.250][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:02.251][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:02.251][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.252][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:02.253][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:02.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:02.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:02.258][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:02.258][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:02.259][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.260][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:02.261][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:02.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:02.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:02.265][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:02.266][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:02.267][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.267][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:02.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:02.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:02.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:02.273][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:02.273][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:02.274][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.275][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:02.276][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:02.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:02.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:02.280][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:02.281][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:02.282][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.282][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:02.283][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:02.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:02.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:02.288][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:02.288][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:02.289][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.290][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:02.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:02.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:02.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:02.295][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:02.296][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:02.297][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.297][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:02.298][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:02.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:02.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:02.309][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:02.309][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:02.310][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.311][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:02.312][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:02.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:02.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:02.316][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:02.317][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:02.317][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.318][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:02.319][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:02.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:02.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:02.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:02.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:02.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:02.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:02.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:02.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:02.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:02.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:02.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:02.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:02.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:02.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:02.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:02.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:02.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:02.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:02.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:02.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:02.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:02.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:02.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:02.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:02.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:02.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:02.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:02.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:02.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:02.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:02.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:02.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:02.353][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2022-10-15 08:03:02.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:02.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:02.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:02.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:02.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:02.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:02.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:02.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:02.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:02.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:02.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:02.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:02.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:02.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:02.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:02.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:02.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:02.376][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2022-10-15 08:03:02.376][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:02.378][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2022-10-15 08:03:02.379][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:02.380][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:02.381][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:02.382][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:02.382][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:02.383][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:02.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:02.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:02.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:02.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:02.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:02.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:02.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:02.395][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.DEBUG[2022-10-15 08:03:02.397][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:02.398][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:02.399][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.TRACE[2022-10-15 08:03:02.812][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442).
biodb.DEBUG[2022-10-15 08:03:03.249][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:03.254][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.content"
biodb.TRACE[2022-10-15 08:03:03.262][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.request"
biodb.TRACE[2022-10-15 08:03:03.270][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml"
biodb.DEBUG[2022-10-15 08:03:03.273][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:03.285][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:03.286][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:03.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:03.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:03.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:03.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:03.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:03.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:03.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:03.297][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:03.298][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:03.298][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.299][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:03.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:03.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:03.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:03.305][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:03.306][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:03.307][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.308][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:03.309][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:03.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:03.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:03.313][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:03.314][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:03.315][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.316][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:03.317][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:03.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:03.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:03.322][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:03.323][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:03.323][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.324][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:03.325][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:03.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:03.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:03.330][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:03.331][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:03.331][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.332][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:03.333][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:03.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:03.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:03.338][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:03.339][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:03.340][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.340][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:03.341][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:03.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:03.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:03.346][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:03.347][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:03.348][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.348][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:03.349][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:03.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:03.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:03.354][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:03.355][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:03.356][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.357][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:03.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:03.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:03.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:03.363][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:03.363][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:03.364][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.365][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:03.366][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:03.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:03.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:03.380][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:03.381][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:03.382][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.382][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:03.383][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:03.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:03.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:03.388][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:03.389][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:03.390][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.390][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:03.391][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:03.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:03.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:03.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:03.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:03.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:03.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:03.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:03.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:03.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:03.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:03.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:03.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:03.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:03.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:03.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:03.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:03.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:03.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:03.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:03.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:03.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:03.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:03.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:03.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:03.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:03.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:03.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:03.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:03.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:03.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:03.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:03.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:03.427][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2022-10-15 08:03:03.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:03.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:03.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:03.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:03.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:03.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:03.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:03.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:03.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:03.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:03.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:03.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:03.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:03.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:03.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:03.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:03.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:03.445][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2022-10-15 08:03:03.446][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:03.447][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2022-10-15 08:03:03.448][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:03.448][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:03.449][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:03.450][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:03.451][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:03.451][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:03.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:03.454][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:03.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:03.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:03.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:03.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:03.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:03.461][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.DEBUG[2022-10-15 08:03:03.463][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:03.463][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:03.464][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.TRACE[2022-10-15 08:03:03.869][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310).
biodb.DEBUG[2022-10-15 08:03:04.300][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:04.305][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.content"
biodb.TRACE[2022-10-15 08:03:04.312][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.request"
biodb.TRACE[2022-10-15 08:03:04.319][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml"
biodb.DEBUG[2022-10-15 08:03:04.322][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:04.332][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:04.333][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:04.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:04.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:04.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:04.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:04.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:04.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:04.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:04.343][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:04.344][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:04.344][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:04.345][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:04.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:04.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:04.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:04.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:04.351][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:04.351][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:04.352][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:04.353][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:04.354][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:04.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:04.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:04.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:04.358][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:04.359][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:04.360][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:04.360][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:04.361][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:04.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:04.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:04.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:04.366][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:04.366][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:04.367][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:04.368][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:04.368][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:04.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:04.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:04.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:04.373][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:04.374][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:04.374][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:04.375][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:04.376][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:04.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:04.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:04.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:04.380][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:04.381][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:04.382][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:04.382][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:04.383][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:04.384][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:04.385][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:04.385][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:04.386][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:04.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:04.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:04.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:04.391][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:04.392][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:04.392][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:04.393][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:04.394][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:04.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:04.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:04.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:04.398][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:04.399][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:04.400][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:04.400][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:04.401][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:04.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:04.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:04.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:04.406][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:04.406][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:04.407][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:04.408][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:04.409][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:04.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:04.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:04.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:04.419][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:04.420][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:04.420][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:04.421][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:04.422][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:04.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:04.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:04.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:04.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:04.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:04.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:04.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:04.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:04.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:04.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:04.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:04.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:04.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:04.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:04.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:04.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:04.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:04.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:04.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:04.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:04.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:04.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:04.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:04.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:04.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:04.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:04.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:04.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:04.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:04.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:04.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:04.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:04.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:04.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:04.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:04.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:04.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:04.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:04.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:04.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:04.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:04.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:04.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:04.455][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2022-10-15 08:03:04.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:04.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:04.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:04.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:04.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:04.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:04.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:04.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:04.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:04.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:04.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:04.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:04.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:04.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:04.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:04.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:04.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:04.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:04.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:04.471][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2022-10-15 08:03:04.472][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:04.473][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2022-10-15 08:03:04.474][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:04.475][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:04.476][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:04.476][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:04.477][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:04.478][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:04.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:04.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:04.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:04.484][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:04.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:04.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:04.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:04.487][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.DEBUG[2022-10-15 08:03:04.489][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:04.489][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:04.490][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.TRACE[2022-10-15 08:03:04.905][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216).
biodb.DEBUG[2022-10-15 08:03:05.331][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:05.336][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.content"
biodb.TRACE[2022-10-15 08:03:05.344][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.request"
biodb.TRACE[2022-10-15 08:03:05.350][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml"
biodb.DEBUG[2022-10-15 08:03:05.353][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:05.363][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:05.364][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:05.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:05.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:05.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:05.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:05.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:05.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:05.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:05.374][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:05.375][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:05.375][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:05.376][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:05.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:05.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:05.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:05.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:05.381][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:05.382][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:05.383][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:05.384][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:05.384][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:05.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:05.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:05.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:05.389][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:05.390][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:05.390][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:05.391][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:05.392][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:05.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:05.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:05.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:05.396][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:05.397][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:05.398][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:05.399][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:05.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:05.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:05.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:05.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:05.404][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:05.405][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:05.405][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:05.406][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:05.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:05.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:05.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:05.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:05.411][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:05.412][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:05.413][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:05.413][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:05.414][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:05.415][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:05.416][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:05.416][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:05.417][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:05.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:05.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:05.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:05.422][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:05.422][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:05.423][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:05.424][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:05.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:05.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:05.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:05.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:05.429][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:05.430][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:05.430][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:05.431][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:05.432][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:05.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:05.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:05.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:05.437][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:05.437][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:05.438][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:05.439][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:05.439][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:05.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:05.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:05.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:05.444][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:05.445][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:05.445][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:05.446][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:05.447][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:05.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:05.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:05.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:05.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:05.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:05.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:05.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:05.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:05.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:05.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:05.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:05.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:05.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:05.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:05.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:05.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:05.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:05.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:05.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:05.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:05.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:05.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:05.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:05.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:05.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:05.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:05.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:05.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:05.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:05.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:05.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:05.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:05.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:05.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:05.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:05.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:05.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:05.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:05.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:05.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:05.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:05.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:05.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:05.487][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2022-10-15 08:03:05.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:05.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:05.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:05.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:05.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:05.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:05.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:05.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:05.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:05.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:05.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:05.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:05.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:05.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:05.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:05.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:05.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:05.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:05.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:05.503][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2022-10-15 08:03:05.504][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:05.505][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2022-10-15 08:03:05.505][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:05.506][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:05.507][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:05.508][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:05.508][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:05.509][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:05.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:05.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:05.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:05.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:05.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:05.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:05.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:05.518][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.DEBUG[2022-10-15 08:03:05.520][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:05.521][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:05.522][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.TRACE[2022-10-15 08:03:05.926][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860).
biodb.DEBUG[2022-10-15 08:03:06.344][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:06.349][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.content"
biodb.TRACE[2022-10-15 08:03:06.356][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.request"
biodb.TRACE[2022-10-15 08:03:06.363][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml"
biodb.DEBUG[2022-10-15 08:03:06.366][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:06.376][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:06.377][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:06.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:06.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:06.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:06.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:06.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:06.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:06.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:06.386][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:06.387][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:06.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:06.389][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:06.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:06.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:06.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:06.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:06.394][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:06.395][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:06.395][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:06.396][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:06.397][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:06.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:06.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:06.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:06.402][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:06.402][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:06.403][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:06.404][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:06.404][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:06.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:06.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:06.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:06.409][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:06.410][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:06.410][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:06.411][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:06.412][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:06.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:06.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:06.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:06.416][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:06.417][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:06.418][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:06.418][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:06.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:06.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:06.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:06.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:06.424][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:06.425][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:06.425][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:06.426][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:06.427][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:06.427][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:06.428][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:06.429][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:06.430][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:06.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:06.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:06.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:06.434][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:06.435][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:06.436][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:06.436][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:06.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:06.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:06.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:06.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:06.442][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:06.442][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:06.443][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:06.444][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:06.444][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:06.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:06.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:06.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:06.449][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:06.450][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:06.450][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:06.451][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:06.452][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:06.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:06.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:06.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:06.456][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:06.457][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:06.458][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:06.459][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:06.459][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:06.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:06.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:06.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:06.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:06.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:06.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:06.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:06.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:06.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:06.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:06.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:06.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:06.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:06.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:06.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:06.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:06.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:06.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:06.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:06.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:06.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:06.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:06.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:06.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:06.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:06.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:06.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:06.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:06.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:06.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:06.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:06.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:06.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:06.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:06.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:06.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:06.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:06.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:06.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:06.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:06.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:06.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:06.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:06.499][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2022-10-15 08:03:06.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:06.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:06.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:06.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:06.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:06.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:06.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:06.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:06.505][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:06.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:06.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:06.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:06.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:06.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:06.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:06.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:06.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:06.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:06.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:06.515][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2022-10-15 08:03:06.515][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:06.517][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2022-10-15 08:03:06.517][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:06.518][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:06.519][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:06.520][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:06.520][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:06.521][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:06.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:06.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:06.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:06.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:06.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:06.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:06.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:06.530][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.DEBUG[2022-10-15 08:03:06.532][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:06.533][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:06.533][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.TRACE[2022-10-15 08:03:06.940][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861).
biodb.DEBUG[2022-10-15 08:03:07.399][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:07.404][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.content"
biodb.TRACE[2022-10-15 08:03:07.412][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.request"
biodb.TRACE[2022-10-15 08:03:07.419][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml"
biodb.DEBUG[2022-10-15 08:03:07.421][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:07.432][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:07.433][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:07.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:07.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:07.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:07.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:07.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:07.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:07.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:07.442][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:07.443][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:07.444][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:07.444][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:07.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:07.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:07.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:07.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:07.450][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:07.451][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:07.451][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:07.452][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:07.453][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:07.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:07.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:07.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:07.457][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:07.458][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:07.459][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:07.459][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:07.460][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:07.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:07.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:07.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:07.465][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:07.466][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:07.466][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:07.467][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:07.468][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:07.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:07.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:07.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:07.472][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:07.473][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:07.474][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:07.474][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:07.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:07.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:07.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:07.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:07.480][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:07.480][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:07.481][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:07.482][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:07.483][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:07.483][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:07.484][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:07.485][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:07.485][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:07.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:07.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:07.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:07.490][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:07.491][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:07.491][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:07.492][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:07.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:07.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:07.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:07.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:07.497][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:07.498][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:07.499][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:07.500][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:07.500][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:07.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:07.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:07.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:07.505][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:07.506][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:07.507][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:07.507][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:07.508][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:07.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:07.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:07.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:07.513][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:07.513][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:07.514][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:07.515][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:07.516][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:07.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:07.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:07.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:07.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:07.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:07.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:07.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:07.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:07.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:07.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:07.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:07.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:07.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:07.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:07.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:07.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:07.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:07.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:07.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:07.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:07.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:07.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:07.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:07.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:07.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:07.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:07.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:07.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:07.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:07.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:07.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:07.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:07.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:07.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:07.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:07.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:07.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:07.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:07.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:07.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:07.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:07.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:07.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:07.555][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2022-10-15 08:03:07.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:07.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:07.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:07.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:07.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:07.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:07.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:07.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:07.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:07.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:07.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:07.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:07.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:07.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:07.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:07.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:07.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:07.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:07.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:07.572][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2022-10-15 08:03:07.572][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:07.573][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2022-10-15 08:03:07.574][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:07.575][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:07.576][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:07.576][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:07.577][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:07.578][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:07.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:07.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:07.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:07.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:07.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:07.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:07.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:07.587][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.DEBUG[2022-10-15 08:03:07.589][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:07.589][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:07.590][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.TRACE[2022-10-15 08:03:08.039][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662).
biodb.DEBUG[2022-10-15 08:03:08.460][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:08.465][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.content"
biodb.TRACE[2022-10-15 08:03:08.472][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.request"
biodb.TRACE[2022-10-15 08:03:08.479][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml"
biodb.DEBUG[2022-10-15 08:03:08.482][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:08.492][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:08.493][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:08.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:08.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:08.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:08.499][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:08.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:08.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:08.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:08.503][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:08.504][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:08.504][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:08.505][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:08.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:08.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:08.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:08.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:08.510][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:08.511][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:08.512][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:08.513][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:08.513][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:08.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:08.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:08.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:08.518][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:08.519][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:08.519][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:08.520][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:08.521][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:08.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:08.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:08.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:08.525][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:08.526][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:08.527][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:08.528][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:08.528][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:08.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:08.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:08.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:08.533][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:08.534][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:08.534][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:08.535][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:08.536][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:08.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:08.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:08.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:08.540][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:08.541][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:08.542][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:08.542][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:08.543][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:08.544][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:08.545][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:08.545][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:08.546][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:08.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:08.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:08.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:08.551][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:08.552][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:08.552][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:08.553][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:08.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:08.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:08.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:08.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:08.558][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:08.559][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:08.560][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:08.560][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:08.561][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:08.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:08.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:08.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:08.566][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:08.567][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:08.567][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:08.568][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:08.569][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:08.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:08.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:08.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:08.573][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:08.574][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:08.575][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:08.576][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:08.576][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:08.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:08.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:08.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:08.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:08.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:08.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:08.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:08.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:08.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:08.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:08.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:08.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:08.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:08.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:08.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:08.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:08.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:08.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:08.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:08.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:08.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:08.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:08.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:08.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:08.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:08.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:08.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:08.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:08.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:08.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:08.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:08.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:08.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:08.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:08.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:08.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:08.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:08.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:08.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:08.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:08.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:08.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:08.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:08.616][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2022-10-15 08:03:08.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:08.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:08.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:08.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:08.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:08.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:08.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:08.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:08.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:08.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:08.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:08.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:08.625][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:08.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:08.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:08.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:08.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:08.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:08.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:08.633][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2022-10-15 08:03:08.633][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:08.635][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2022-10-15 08:03:08.636][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:08.636][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:08.637][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:08.638][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:08.638][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:08.639][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:08.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:08.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:08.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:08.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:08.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:08.647][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:08.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:08.648][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.DEBUG[2022-10-15 08:03:08.650][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:08.651][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:08.652][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.TRACE[2022-10-15 08:03:09.091][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084).
biodb.DEBUG[2022-10-15 08:03:09.540][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:09.545][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.content"
biodb.TRACE[2022-10-15 08:03:09.552][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.request"
biodb.TRACE[2022-10-15 08:03:09.559][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml"
biodb.DEBUG[2022-10-15 08:03:09.562][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:09.572][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:09.573][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:09.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:09.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:09.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:09.579][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:09.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:09.581][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:09.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:09.583][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:09.584][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:09.585][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:09.585][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:09.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:09.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:09.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:09.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:09.591][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:09.591][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:09.592][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:09.593][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:09.594][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:09.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:09.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:09.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:09.598][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:09.599][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:09.600][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:09.600][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:09.601][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:09.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:09.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:09.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:09.606][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:09.606][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:09.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:09.608][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:09.608][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:09.609][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:09.610][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:09.611][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:09.611][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:09.612][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:09.613][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:09.613][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:09.614][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:09.615][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:09.616][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:09.616][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:09.617][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:09.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:09.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:09.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:09.622][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:09.623][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:09.624][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:09.624][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:09.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:09.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:09.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:09.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:09.630][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:09.631][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:09.632][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:09.632][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:09.633][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:09.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:09.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:09.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:09.638][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:09.639][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:09.639][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:09.640][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:09.641][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:09.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:09.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:09.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:09.646][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:09.647][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:09.647][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:09.648][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:09.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:09.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:09.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:09.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:09.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:09.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:09.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:09.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:09.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:09.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:09.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:09.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:09.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:09.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:09.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:09.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:09.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:09.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:09.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:09.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:09.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:09.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:09.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:09.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:09.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:09.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:09.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:09.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:09.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:09.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:09.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:09.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:09.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:09.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:09.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:09.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:09.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:09.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:09.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:09.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:09.679][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2022-10-15 08:03:09.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:09.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:09.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:09.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:09.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:09.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:09.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:09.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:09.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:09.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:09.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:09.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:09.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:09.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:09.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:09.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:09.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:09.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:09.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:09.701][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2022-10-15 08:03:09.702][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:09.703][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2022-10-15 08:03:09.704][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:09.705][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:09.705][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:09.706][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:09.707][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:09.707][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:09.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:09.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:09.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:09.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:09.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:09.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:09.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:09.717][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.DEBUG[2022-10-15 08:03:09.718][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:09.719][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:09.720][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.TRACE[2022-10-15 08:03:10.121][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086).
biodb.DEBUG[2022-10-15 08:03:10.543][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:10.548][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.content"
biodb.TRACE[2022-10-15 08:03:10.556][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.request"
biodb.TRACE[2022-10-15 08:03:10.563][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml"
biodb.DEBUG[2022-10-15 08:03:10.566][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:10.576][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:10.577][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:10.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:10.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:10.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:10.583][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:10.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:10.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:10.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:10.587][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:10.588][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:10.588][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:10.589][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:10.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:10.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:10.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:10.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:10.595][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:10.595][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:10.596][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:10.597][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:10.598][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:10.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:10.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:10.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:10.602][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:10.603][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:10.604][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:10.604][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:10.605][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:10.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:10.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:10.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:10.610][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:10.611][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:10.611][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:10.612][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:10.613][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:10.614][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:10.614][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:10.615][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:10.616][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:10.617][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:10.617][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:10.618][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:10.619][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:10.620][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:10.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:10.621][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:10.622][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:10.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:10.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:10.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:10.626][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:10.627][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:10.628][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:10.629][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:10.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:10.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:10.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:10.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:10.634][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:10.635][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:10.636][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:10.636][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:10.637][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:10.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:10.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:10.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:10.642][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:10.643][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:10.643][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:10.644][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:10.645][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:10.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:10.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:10.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:10.650][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:10.650][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:10.651][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:10.652][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:10.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:10.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:10.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:10.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:10.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:10.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:10.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:10.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:10.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:10.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:10.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:10.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:10.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:10.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:10.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:10.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:10.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:10.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:10.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:10.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:10.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:10.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:10.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:10.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:10.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:10.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:10.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:10.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:10.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:10.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:10.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:10.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:10.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:10.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:10.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:10.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:10.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:10.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:10.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:10.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:10.683][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2022-10-15 08:03:10.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:10.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:10.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:10.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:10.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:10.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:10.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:10.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:10.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:10.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:10.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:10.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:10.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:10.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:10.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:10.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:10.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:10.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:10.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:10.700][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2022-10-15 08:03:10.701][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:10.702][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2022-10-15 08:03:10.703][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:10.704][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:10.705][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:10.705][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:10.706][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:10.707][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:10.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:10.709][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:10.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:10.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:10.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:10.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:10.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:10.722][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.DEBUG[2022-10-15 08:03:10.724][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:10.724][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:10.725][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.TRACE[2022-10-15 08:03:11.136][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123).
biodb.DEBUG[2022-10-15 08:03:11.564][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:11.569][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.content"
biodb.TRACE[2022-10-15 08:03:11.576][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.request"
biodb.TRACE[2022-10-15 08:03:11.583][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml"
biodb.DEBUG[2022-10-15 08:03:11.585][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:11.596][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:11.596][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:11.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:11.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:11.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:11.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:11.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:11.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:11.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:11.606][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:11.607][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:11.608][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:11.608][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:11.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:11.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:11.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:11.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:11.614][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:11.614][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:11.615][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:11.616][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:11.617][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:11.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:11.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:11.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:11.621][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:11.622][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:11.623][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:11.623][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:11.624][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:11.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:11.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:11.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:11.629][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:11.629][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:11.630][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:11.631][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:11.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:11.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:11.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:11.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:11.636][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:11.637][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:11.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:11.638][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:11.639][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:11.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:11.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:11.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:11.644][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:11.644][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:11.645][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:11.646][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:11.647][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:11.647][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:11.648][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:11.649][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:11.650][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:11.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:11.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:11.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:11.654][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:11.655][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:11.656][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:11.656][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:11.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:11.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:11.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:11.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:11.662][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:11.662][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:11.663][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:11.664][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:11.665][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:11.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:11.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:11.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:11.669][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:11.670][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:11.671][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:11.671][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:11.672][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:11.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:11.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:11.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:11.677][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:11.678][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:11.678][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:11.679][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:11.680][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:11.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:11.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:11.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:11.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:11.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:11.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:11.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:11.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:11.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:11.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:11.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:11.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:11.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:11.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:11.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:11.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:11.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:11.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:11.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:11.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:11.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:11.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:11.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:11.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:11.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:11.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:11.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:11.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:11.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:11.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:11.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:11.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:11.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:11.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:11.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:11.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:11.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:11.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:11.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:11.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:11.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:11.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:11.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:11.714][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2022-10-15 08:03:11.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:11.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:11.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:11.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:11.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:11.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:11.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:11.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:11.720][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:11.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:11.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:11.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:11.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:11.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:11.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:11.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:11.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:11.729][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:11.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:11.731][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2022-10-15 08:03:11.732][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:11.733][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2022-10-15 08:03:11.734][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:11.734][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:11.735][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:11.736][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:11.737][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:11.737][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:11.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:11.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:11.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:11.744][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:11.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:11.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:11.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:11.752][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.DEBUG[2022-10-15 08:03:11.754][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:11.755][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:11.756][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.TRACE[2022-10-15 08:03:12.182][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117).
biodb.DEBUG[2022-10-15 08:03:12.604][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:12.608][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.content"
biodb.TRACE[2022-10-15 08:03:12.616][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.request"
biodb.TRACE[2022-10-15 08:03:12.622][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml"
biodb.DEBUG[2022-10-15 08:03:12.625][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:12.635][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:12.636][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:12.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:12.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:12.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:12.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:12.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:12.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:12.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:12.646][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:12.647][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:12.647][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:12.648][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:12.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:12.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:12.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:12.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:12.653][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:12.654][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:12.655][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:12.656][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:12.656][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:12.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:12.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:12.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:12.661][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:12.662][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:12.662][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:12.663][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:12.664][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:12.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:12.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:12.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:12.669][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:12.669][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:12.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:12.671][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:12.672][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:12.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:12.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:12.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:12.676][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:12.677][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:12.677][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:12.678][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:12.679][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:12.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:12.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:12.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:12.684][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:12.684][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:12.685][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:12.686][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:12.686][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:12.687][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:12.688][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:12.689][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:12.689][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:12.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:12.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:12.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:12.694][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:12.695][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:12.695][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:12.696][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:12.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:12.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:12.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:12.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:12.701][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:12.702][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:12.703][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:12.704][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:12.705][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:12.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:12.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:12.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:12.709][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:12.710][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:12.711][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:12.711][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:12.712][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:12.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:12.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:12.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:12.717][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:12.717][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:12.718][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:12.719][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:12.720][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:12.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:12.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:12.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:12.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:12.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:12.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:12.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:12.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:12.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:12.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:12.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:12.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:12.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:12.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:12.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:12.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:12.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:12.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:12.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:12.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:12.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:12.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:12.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:12.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:12.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:12.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:12.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:12.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:12.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:12.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:12.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:12.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:12.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:12.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:12.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:12.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:12.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:12.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:12.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:12.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:12.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:12.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:12.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:12.754][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2022-10-15 08:03:12.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:12.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:12.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:12.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:12.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:12.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:12.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:12.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:12.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:12.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:12.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:12.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:12.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:12.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:12.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:12.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:12.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:12.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:12.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:12.771][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2022-10-15 08:03:12.771][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:12.772][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2022-10-15 08:03:12.773][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:12.774][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:12.775][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:12.775][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:12.776][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:12.777][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:12.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:12.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:12.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:12.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:12.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:12.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:12.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:12.786][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.DEBUG[2022-10-15 08:03:12.788][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:12.789][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:12.790][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.TRACE[2022-10-15 08:03:16.191][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307).
biodb.DEBUG[2022-10-15 08:03:16.680][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:16.685][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.content"
biodb.TRACE[2022-10-15 08:03:16.692][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.request"
biodb.TRACE[2022-10-15 08:03:16.699][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml"
biodb.DEBUG[2022-10-15 08:03:16.701][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:16.711][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:16.712][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:16.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:16.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:16.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:16.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:16.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:16.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:16.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:16.722][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:16.723][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:16.723][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:16.724][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:16.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:16.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:16.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:16.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:16.730][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:16.730][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:16.731][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:16.732][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:16.733][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:16.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:16.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:16.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:16.737][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:16.738][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:16.739][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:16.739][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:16.740][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:16.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:16.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:16.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:16.745][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:16.745][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:16.746][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:16.747][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:16.747][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:16.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:16.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:16.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:16.752][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:16.753][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:16.753][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:16.754][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:16.755][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:16.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:16.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:16.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:16.759][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:16.760][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:16.761][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:16.761][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:16.762][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:16.763][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:16.764][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:16.764][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:16.765][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:16.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:16.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:16.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:16.770][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:16.770][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:16.771][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:16.772][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:16.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:16.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:16.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:16.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:16.777][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:16.778][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:16.779][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:16.779][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:16.780][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:16.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:16.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:16.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:16.785][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:16.786][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:16.786][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:16.787][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:16.788][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:16.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:16.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:16.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:16.793][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:16.793][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:16.794][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:16.795][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:16.795][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:16.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:16.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:16.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:16.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:16.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:16.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:16.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:16.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:16.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:16.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:16.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:16.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:16.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:16.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:16.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:16.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:16.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:16.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:16.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:16.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:16.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:16.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:16.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:16.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:16.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:16.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:16.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:16.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:16.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:16.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:16.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:16.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:16.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:16.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:16.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:16.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:16.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:16.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:16.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:16.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:16.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:16.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:16.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:16.830][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2022-10-15 08:03:16.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:16.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:16.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:16.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:16.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:16.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:16.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:16.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:16.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:16.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:16.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:16.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:16.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:16.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:16.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:16.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:16.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:16.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:16.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:16.847][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2022-10-15 08:03:16.848][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:16.849][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2022-10-15 08:03:16.850][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:16.850][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:16.851][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:16.852][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:16.853][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:16.853][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:16.855][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:16.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:16.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:16.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:16.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:16.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:16.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:16.863][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.DEBUG[2022-10-15 08:03:16.864][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:16.865][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:16.866][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.TRACE[2022-10-15 08:03:17.361][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803).
biodb.DEBUG[2022-10-15 08:03:17.812][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:17.817][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.content"
biodb.TRACE[2022-10-15 08:03:17.825][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.request"
biodb.TRACE[2022-10-15 08:03:17.831][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml"
biodb.DEBUG[2022-10-15 08:03:17.834][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:17.844][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:17.845][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:17.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:17.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:17.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:17.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:17.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:17.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:17.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:17.855][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:17.856][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:17.856][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:17.857][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:17.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:17.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:17.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:17.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:17.862][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:17.863][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:17.864][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:17.865][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:17.865][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:17.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:17.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:17.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:17.870][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:17.871][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:17.871][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:17.872][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:17.873][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:17.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:17.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:17.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:17.878][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:17.878][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:17.879][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:17.880][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:17.880][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:17.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:17.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:17.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:17.885][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:17.886][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:17.886][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:17.887][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:17.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:17.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:17.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:17.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:17.892][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:17.893][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:17.894][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:17.894][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:17.895][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:17.896][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:17.897][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:17.897][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:17.898][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:17.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:17.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:17.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:17.903][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:17.903][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:17.904][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:17.905][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:17.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:17.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:17.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:17.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:17.910][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:17.911][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:17.912][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:17.912][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:17.913][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:17.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:17.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:17.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:17.918][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:17.918][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:17.919][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:17.920][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:17.921][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:17.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:17.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:17.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:17.925][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:17.926][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:17.927][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:17.927][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:17.928][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:17.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:17.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:17.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:17.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:17.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:17.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:17.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:17.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:17.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:17.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:17.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:17.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:17.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:17.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:17.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:17.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:17.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:17.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:17.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:17.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:17.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:17.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:17.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:17.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:17.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:17.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:17.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:17.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:17.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:17.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:17.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:17.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:17.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:17.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:17.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:17.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:17.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:17.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:17.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:17.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:17.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:17.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:17.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:17.962][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2022-10-15 08:03:17.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:17.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:17.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:17.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:17.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:17.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:17.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:17.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:17.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:17.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:17.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:17.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:17.971][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:17.972][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:17.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:17.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:17.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:17.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:17.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:17.979][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2022-10-15 08:03:17.980][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:17.981][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2022-10-15 08:03:17.982][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:17.983][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:17.983][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:17.984][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:17.985][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:17.985][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:17.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:17.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:17.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:17.992][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:17.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:17.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:17.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:17.995][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.DEBUG[2022-10-15 08:03:17.997][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:17.997][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:17.998][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.TRACE[2022-10-15 08:03:18.417][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962).
biodb.DEBUG[2022-10-15 08:03:18.839][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:18.844][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.content"
biodb.TRACE[2022-10-15 08:03:18.851][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.request"
biodb.TRACE[2022-10-15 08:03:18.858][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml"
biodb.DEBUG[2022-10-15 08:03:18.861][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:18.871][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:18.872][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:18.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:18.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:18.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:18.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:18.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:18.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:18.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:18.881][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:18.882][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:18.882][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:18.883][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:18.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:18.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:18.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:18.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:18.889][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:18.889][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:18.890][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:18.891][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:18.892][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:18.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:18.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:18.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:18.896][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:18.897][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:18.898][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:18.898][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:18.899][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:18.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:18.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:18.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:18.904][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:18.904][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:18.905][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:18.906][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:18.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:18.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:18.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:18.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:18.911][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:18.912][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:18.913][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:18.913][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:18.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:18.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:18.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:18.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:18.919][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:18.919][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:18.920][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:18.921][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:18.922][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:18.922][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:18.923][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:18.924][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:18.924][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:18.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:18.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:18.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:18.929][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:18.930][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:18.930][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:18.931][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:18.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:18.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:18.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:18.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:18.936][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:18.937][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:18.938][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:18.938][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:18.939][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:18.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:18.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:18.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:18.944][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:18.945][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:18.945][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:18.946][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:18.947][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:18.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:18.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:18.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:18.951][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:18.952][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:18.953][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:18.953][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:18.954][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:18.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:18.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:18.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:18.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:18.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:18.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:18.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:18.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:18.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:18.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:18.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:18.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:18.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:18.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:18.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:18.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:18.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:18.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:18.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:18.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:18.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:18.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:18.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:18.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:18.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:18.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:18.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:18.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:18.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:18.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:18.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:18.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:18.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:18.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:18.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:18.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:18.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:18.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:18.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:18.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:18.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:18.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:18.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:18.988][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2022-10-15 08:03:18.989][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:18.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:18.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:18.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:18.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:18.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:18.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:18.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:18.997][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:18.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:18.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:18.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:19.026][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:03:19.028][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:03:19.029][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-10-15 08:03:19.030][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:03:19.031][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-10-15 08:03:19.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:19.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:19.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:19.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:19.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:19.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:19.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:19.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:19.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:19.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:19.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:19.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:19.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:19.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:19.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:19.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:19.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:19.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:19.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:19.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:19.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:19.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:19.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:19.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:19.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:19.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:19.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:19.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:19.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:19.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:19.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:19.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:19.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:19.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:19.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:19.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:19.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:19.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:19.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:19.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:19.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:19.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:19.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:19.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:19.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:19.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:19.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:19.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:19.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:19.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:19.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:19.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:19.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:19.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:19.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:19.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:19.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:19.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:19.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:19.183][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:19.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:19.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:19.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:19.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:19.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:19.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:19.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:19.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:19.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:19.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:19.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:19.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.208][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:19.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:19.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:19.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:19.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:19.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:19.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:19.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:19.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:19.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:19.227][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:19.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:19.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:19.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:19.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:19.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:19.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:19.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:19.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:19.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:19.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:19.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:19.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:19.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:19.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:19.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:19.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:19.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:19.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:19.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:19.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:19.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:19.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:19.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:19.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:19.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:19.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:19.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:19.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:19.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:19.284][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:19.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:19.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:19.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:19.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:19.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:19.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:19.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:19.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:19.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:19.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:19.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:19.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:19.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:19.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:19.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:19.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:19.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:19.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:19.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:19.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:19.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:19.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:19.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:19.330][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:19.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:19.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:19.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:19.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:19.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:19.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:19.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:19.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:19.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:19.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:19.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:19.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:19.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:19.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:19.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:19.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:19.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:19.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:19.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:19.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:19.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:19.415][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:03:19.417][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:19.418][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:19.419][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-10-15 08:03:19.823][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-10-15 08:03:20.240][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:20.245][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content"
biodb.TRACE[2022-10-15 08:03:20.252][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.request"
biodb.DEBUG[2022-10-15 08:03:20.256][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:03:20.259][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:20.259][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:20.261][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-10-15 08:03:20.664][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-10-15 08:03:21.083][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:21.087][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content"
biodb.TRACE[2022-10-15 08:03:21.095][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.request"
biodb.DEBUG[2022-10-15 08:03:21.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:21.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:21.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:21.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:21.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:21.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:21.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:21.106][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2022-10-15 08:03:21.107][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:21.108][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2022-10-15 08:03:21.109][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:21.109][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:21.110][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:21.111][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:21.112][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:21.112][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:21.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:21.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:21.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:21.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:21.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:21.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:21.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:21.121][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648".
biodb.DEBUG[2022-10-15 08:03:21.123][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:21.124][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:21.125][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648".
biodb.TRACE[2022-10-15 08:03:21.528][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648).
biodb.DEBUG[2022-10-15 08:03:21.951][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:21.956][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/844829d8afb6d338ebac906e62f6cb8e.content"
biodb.TRACE[2022-10-15 08:03:21.964][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/844829d8afb6d338ebac906e62f6cb8e.request"
biodb.TRACE[2022-10-15 08:03:21.971][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml"
biodb.DEBUG[2022-10-15 08:03:21.973][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:21.984][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:21.985][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:21.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:21.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:21.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:21.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:21.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:21.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:21.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:21.995][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:21.996][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:21.996][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:21.997][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:21.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:21.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:22.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:22.003][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:22.003][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:22.004][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.005][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:22.006][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:22.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:22.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:22.010][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:22.011][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:22.012][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.012][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:22.013][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:22.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:22.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:22.018][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:22.019][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:22.020][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.020][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:22.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:22.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:22.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:22.026][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:22.027][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:22.027][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.028][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:22.029][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:22.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:22.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:22.033][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:22.034][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:22.035][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.036][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:22.036][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:22.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:22.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:22.041][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:22.042][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:22.043][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.043][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:22.044][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:22.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:22.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:22.049][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:22.049][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:22.050][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.051][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:22.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:22.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:22.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:22.056][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:22.057][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:22.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.058][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:22.059][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:22.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:22.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:22.064][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:22.065][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:22.065][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.066][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:22.067][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:22.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:22.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:22.072][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:22.072][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:22.073][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.074][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:22.074][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:22.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:22.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:22.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:22.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:22.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:22.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:22.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:22.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:22.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:22.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:22.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:22.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:22.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:22.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:22.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:22.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:22.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:22.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:22.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:22.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:22.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:22.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:22.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:22.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:22.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:22.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:22.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:22.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:22.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:22.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:22.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:22.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:22.115][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2022-10-15 08:03:22.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:22.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:22.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:22.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:22.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:22.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:22.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:22.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:22.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:22.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:22.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:22.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:22.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:22.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:22.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:22.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:22.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:22.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:22.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:22.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:22.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:22.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:22.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:22.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:22.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:22.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:22.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:22.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:22.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:22.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:22.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:22.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:22.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:22.148][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2022-10-15 08:03:22.148][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:22.149][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2022-10-15 08:03:22.150][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:22.151][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:22.152][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:22.153][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:22.153][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:22.154][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:22.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:22.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:22.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:22.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:22.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:22.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:22.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:22.163][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447".
biodb.DEBUG[2022-10-15 08:03:22.165][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:22.166][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:22.167][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447".
biodb.TRACE[2022-10-15 08:03:22.572][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447).
biodb.DEBUG[2022-10-15 08:03:22.990][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:22.995][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ceadc6ac0ce91f601616e22be7c76851.content"
biodb.TRACE[2022-10-15 08:03:23.003][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ceadc6ac0ce91f601616e22be7c76851.request"
biodb.TRACE[2022-10-15 08:03:23.010][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml"
biodb.DEBUG[2022-10-15 08:03:23.012][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:23.023][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:23.024][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:23.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.034][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:23.034][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:23.035][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.036][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:23.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:23.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.041][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:23.042][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:23.043][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.043][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.044][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:23.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:23.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.049][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:23.050][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:23.050][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.051][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.052][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:23.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:23.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.056][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:23.057][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:23.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.058][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.059][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:23.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:23.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.064][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:23.064][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:23.065][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.066][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.067][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:23.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:23.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.071][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:23.072][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:23.073][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.073][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.074][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:23.075][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.076][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.076][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.077][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:23.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.082][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.082][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.083][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.084][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.089][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:23.090][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:23.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.091][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.092][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:23.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:23.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.097][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:23.097][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:23.098][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.099][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.100][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:23.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:23.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.110][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:23.111][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:23.111][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.112][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.113][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:23.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:23.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:23.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:23.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:23.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:23.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:23.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:23.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:23.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:23.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:23.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:23.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:23.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:23.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:23.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:23.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:23.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:23.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:23.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:23.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:23.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:23.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.146][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2022-10-15 08:03:23.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.181][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:03:23.183][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:03:23.184][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-10-15 08:03:23.185][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:03:23.186][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-10-15 08:03:23.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.322][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.348][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.405][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.441][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.468][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.489][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.521][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:03:23.524][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:03:23.524][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-10-15 08:03:23.525][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:03:23.526][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-10-15 08:03:23.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.552][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.568][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.588][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.639][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.640][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.675][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.691][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.784][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.788][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.820][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.829][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:23.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.855][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:03:23.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:03:23.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-10-15 08:03:23.866][biodb::testThat]
biodb.INFO [2022-10-15 08:03:23.867][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2022-10-15 08:03:23.867][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:03:23.868][biodb::testThat]
biodb.TRACE[2022-10-15 08:03:23.870][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:03:23.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:03:23.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.873][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:03:23.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:03:23.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.876][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:03:23.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:03:23.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:23.951][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:03:23.953][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:03:23.954][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2022-10-15 08:03:23.955][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:03:23.956][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2022-10-15 08:03:23.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.964][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:23.975][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:03:23.977][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:03:23.978][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2022-10-15 08:03:23.978][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:03:23.979][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2022-10-15 08:03:23.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:23.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:23.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:23.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:23.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:23.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:23.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:23.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:23.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:23.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:23.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:24.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:24.001][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:03:24.003][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:03:24.004][cch$loadFileContent] Trying to load 1 files from cache: [1]: "94c7655c8f372fb2982c15119402bcba".
biodb.TRACE[2022-10-15 08:03:24.005][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:03:24.006][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content".
biodb.DEBUG[2022-10-15 08:03:24.007][private$bdb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:03:24.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:24.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:24.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:24.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:24.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:24.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:24.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:24.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:24.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:24.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:24.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:24.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:24.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:24.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:24.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:24.021][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:24.021][private$selectFields]
biodb.TRACE[2022-10-15 08:03:24.022][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:03:24.023][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:03:24.024][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:24.024][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:24.025][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:24.026][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:24.026][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:24.027][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:24.028][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:24.028][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:24.029][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:24.029][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:24.030][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:24.031][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:24.032][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:24.032][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:24.033][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:24.034][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:03:24.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:24.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:24.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:24.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:24.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:24.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:24.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:24.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:24.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:24.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:24.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:24.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:24.048][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2022-10-15 08:03:24.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:24.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:24.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:24.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:24.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:24.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:24.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:24.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:24.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:24.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:24.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:24.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:24.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:24.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:24.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:24.062][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:24.062][private$selectFields]
biodb.TRACE[2022-10-15 08:03:24.063][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:03:24.064][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:03:24.064][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:24.065][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:24.066][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:24.066][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:24.067][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:24.068][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:24.069][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:24.069][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:24.070][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:24.071][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:24.071][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:24.072][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:24.073][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:24.073][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:24.074][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:24.075][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:03:24.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:24.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:24.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:24.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:24.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:24.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:24.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:24.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:24.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:24.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:24.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:24.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:24.084][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-10-15 08:03:24.085][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:03:24.085][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:03:24.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:24.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:24.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:24.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:24.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:24.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:24.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:24.126][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:03:24.129][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:24.130][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:24.132][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-10-15 08:03:24.539][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-10-15 08:03:24.959][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:24.964][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content"
biodb.TRACE[2022-10-15 08:03:24.972][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.request"
biodb.DEBUG[2022-10-15 08:03:24.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:24.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:24.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:24.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:24.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:24.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:24.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:24.984][private$loadEntries] Creating entries from ids [1]: "113227".
biodb.DEBUG[2022-10-15 08:03:24.984][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:24.986][cch$loadFileContent] Trying to load 1 files from cache: [1]: "113227".
biodb.TRACE[2022-10-15 08:03:24.986][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:24.987][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:24.988][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:24.989][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:24.990][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:24.990][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:24.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:24.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:24.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:24.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:24.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:24.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:24.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:25.000][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.DEBUG[2022-10-15 08:03:25.002][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:25.002][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:25.003][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.TRACE[2022-10-15 08:03:25.416][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227).
biodb.DEBUG[2022-10-15 08:03:26.056][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:26.061][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.content"
biodb.TRACE[2022-10-15 08:03:26.068][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.request"
biodb.TRACE[2022-10-15 08:03:26.075][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/113227.xml"
biodb.DEBUG[2022-10-15 08:03:26.078][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:26.088][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:26.089][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:26.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:26.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:26.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:26.096][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:26.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:26.097][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:26.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:26.099][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:26.100][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:26.100][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:26.101][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:26.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:26.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:26.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:26.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:26.107][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:26.108][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:26.108][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:26.109][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:26.110][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:26.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:26.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:26.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:26.115][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:26.115][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:26.116][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:26.117][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:26.118][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:26.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:26.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:26.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:26.123][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:26.123][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:26.124][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:26.125][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:26.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:26.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:26.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:26.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:26.130][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:26.131][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:26.132][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:26.132][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:26.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:26.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:26.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:26.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:26.138][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:26.139][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:26.139][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:26.140][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:26.141][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:26.142][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:26.142][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:26.143][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:26.144][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:26.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:26.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:26.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:26.149][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:26.149][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:26.150][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:26.151][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:26.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:26.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:26.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:26.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:26.156][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:26.157][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:26.158][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:26.158][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:26.159][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:26.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:26.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:26.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:26.164][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:26.165][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:26.166][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:26.166][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:26.167][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:26.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:26.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:26.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:26.172][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:26.173][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:26.173][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:26.174][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:26.175][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:26.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:26.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:26.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:26.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:26.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:26.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:26.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:26.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:26.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:26.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:26.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:26.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:26.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:26.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:26.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:26.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:26.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:26.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:26.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:26.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:26.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:26.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:26.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:26.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:26.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:26.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:26.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:26.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:26.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:26.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:26.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:26.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:26.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:26.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:26.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:26.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:26.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:26.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:26.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:26.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:26.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:26.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:26.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:26.211][self$createEntryFromContent] Accession numbers: 113227.
biodb.TRACE[2022-10-15 08:03:26.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:26.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:26.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:26.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:26.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:26.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:26.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:26.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:26.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:26.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:26.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:26.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:26.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:26.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:26.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:26.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:26.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:26.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:26.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:26.228][private$loadEntries] Creating entries from ids [1]: "169712".
biodb.DEBUG[2022-10-15 08:03:26.229][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:26.230][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169712".
biodb.TRACE[2022-10-15 08:03:26.231][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:26.232][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:26.233][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:26.233][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:26.234][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:26.235][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:26.237][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:26.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:26.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:26.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:26.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:26.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:26.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:26.245][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.DEBUG[2022-10-15 08:03:26.247][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:26.247][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:26.248][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.TRACE[2022-10-15 08:03:26.669][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712).
biodb.DEBUG[2022-10-15 08:03:27.092][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:27.097][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.content"
biodb.TRACE[2022-10-15 08:03:27.104][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.request"
biodb.TRACE[2022-10-15 08:03:27.111][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169712.xml"
biodb.DEBUG[2022-10-15 08:03:27.114][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:27.124][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:27.125][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:27.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:27.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:27.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:27.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:27.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:27.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:27.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:27.135][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:27.136][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:27.137][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:27.137][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:27.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:27.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:27.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:27.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:27.144][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:27.144][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:27.145][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:27.146][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:27.147][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:27.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:27.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:27.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:27.152][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:27.153][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:27.153][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:27.154][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:27.155][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:27.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:27.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:27.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:27.160][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:27.161][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:27.161][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:27.162][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:27.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:27.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:27.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:27.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:27.168][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:27.169][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:27.169][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:27.170][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:27.171][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:27.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:27.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:27.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:27.176][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:27.176][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:27.177][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:27.178][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:27.179][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:27.179][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:27.180][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:27.181][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:27.182][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:27.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:27.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:27.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:27.186][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:27.187][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:27.188][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:27.188][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:27.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:27.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:27.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:27.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:27.197][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:27.199][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:27.199][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:27.200][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:27.202][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:27.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:27.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:27.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:27.208][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:27.209][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:27.210][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:27.210][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:27.211][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:27.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:27.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:27.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:27.217][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:27.217][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:27.218][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:27.219][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:27.220][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:27.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:27.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:27.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:27.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:27.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:27.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:27.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:27.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:27.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:27.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:27.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:27.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:27.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:27.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:27.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:27.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:27.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:27.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:27.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:27.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:27.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:27.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:27.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:27.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:27.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:27.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:27.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:27.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:27.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:27.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:27.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:27.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:27.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:27.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:27.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:27.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:27.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:27.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:27.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:27.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:27.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:27.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:27.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:27.259][self$createEntryFromContent] Accession numbers: 169712.
biodb.TRACE[2022-10-15 08:03:27.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:27.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:27.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:27.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:27.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:27.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:27.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:27.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:27.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:27.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:27.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:27.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:27.270][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:03:27.273][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:27.274][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:27.275][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-10-15 08:03:27.688][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-10-15 08:03:28.117][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:28.122][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content"
biodb.TRACE[2022-10-15 08:03:28.145][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.request"
biodb.DEBUG[2022-10-15 08:03:28.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:28.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:28.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:28.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:28.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:28.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:28.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:28.158][private$loadEntries] Creating entries from ids [1]: "4781".
biodb.DEBUG[2022-10-15 08:03:28.159][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:28.160][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4781".
biodb.TRACE[2022-10-15 08:03:28.161][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:28.162][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:28.163][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:28.164][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:28.165][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:28.165][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:28.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:28.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:28.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:28.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:28.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:28.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:28.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:28.175][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.DEBUG[2022-10-15 08:03:28.177][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:28.178][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:28.179][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.TRACE[2022-10-15 08:03:28.593][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781).
biodb.DEBUG[2022-10-15 08:03:29.117][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:29.123][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.content"
biodb.TRACE[2022-10-15 08:03:29.132][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.request"
biodb.TRACE[2022-10-15 08:03:29.139][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4781.xml"
biodb.DEBUG[2022-10-15 08:03:29.142][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:29.154][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:29.155][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:29.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:29.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:29.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:29.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:29.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:29.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:29.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:29.166][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:29.167][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:29.167][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.168][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:29.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:29.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:29.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:29.174][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:29.175][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:29.176][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.176][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:29.177][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:29.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:29.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:29.182][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:29.183][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:29.184][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.184][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:29.185][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:29.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:29.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:29.190][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:29.191][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:29.192][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.192][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:29.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:29.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:29.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:29.198][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:29.199][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:29.199][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.200][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:29.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:29.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:29.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:29.206][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:29.206][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:29.207][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.208][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:29.209][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:29.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:29.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:29.213][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:29.214][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:29.215][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.216][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:29.216][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:29.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:29.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:29.221][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:29.222][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:29.223][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.223][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:29.224][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:29.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:29.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:29.229][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:29.230][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:29.230][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.231][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:29.233][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:29.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:29.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:29.240][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:29.240][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:29.241][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.242][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:29.243][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:29.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:29.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:29.249][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:29.250][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:29.251][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.251][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:29.252][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:29.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:29.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:29.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:29.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:29.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:29.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:29.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:29.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:29.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:29.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:29.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:29.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:29.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:29.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:29.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:29.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:29.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:29.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:29.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:29.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:29.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:29.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:29.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:29.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:29.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:29.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:29.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:29.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:29.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:29.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:29.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:29.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:29.297][self$createEntryFromContent] Accession numbers: 4781.
biodb.TRACE[2022-10-15 08:03:29.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:29.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:29.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:29.301][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:29.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:29.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:29.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:29.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:29.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:29.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:29.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:29.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:29.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:29.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:29.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:29.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:29.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:29.316][private$loadEntries] Creating entries from ids [1]: "16587".
biodb.DEBUG[2022-10-15 08:03:29.316][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:29.317][cch$loadFileContent] Trying to load 1 files from cache: [1]: "16587".
biodb.TRACE[2022-10-15 08:03:29.318][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:29.319][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:29.320][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:29.321][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:29.322][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:29.322][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:29.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:29.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:29.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:29.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:29.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:29.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:29.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:29.333][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.DEBUG[2022-10-15 08:03:29.334][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:29.335][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:29.336][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.TRACE[2022-10-15 08:03:29.741][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587).
biodb.DEBUG[2022-10-15 08:03:30.163][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:30.168][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.content"
biodb.TRACE[2022-10-15 08:03:30.176][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.request"
biodb.TRACE[2022-10-15 08:03:30.183][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/16587.xml"
biodb.DEBUG[2022-10-15 08:03:30.185][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:30.196][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:30.197][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:30.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:30.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:30.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:30.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:30.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:30.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:30.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:30.207][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:30.208][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:30.209][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.209][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:30.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:30.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:30.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:30.215][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:30.216][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:30.217][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.217][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:30.218][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:30.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:30.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:30.223][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:30.224][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:30.224][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.225][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:30.226][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:30.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:30.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:30.231][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:30.232][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:30.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.233][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:30.234][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:30.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:30.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:30.239][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:30.240][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:30.240][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.241][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:30.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:30.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:30.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:30.247][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:30.247][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:30.248][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.249][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:30.250][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:30.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:30.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:30.254][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:30.255][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:30.256][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.256][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:30.257][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:30.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:30.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:30.262][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:30.263][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:30.264][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.264][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:30.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:30.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:30.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:30.270][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:30.271][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:30.271][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.272][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:30.273][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:30.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:30.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:30.278][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:30.279][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:30.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.280][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:30.281][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:30.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:30.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:30.286][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:30.286][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:30.287][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.288][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:30.289][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:30.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:30.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:30.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:30.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:30.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:30.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:30.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:30.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:30.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:30.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:30.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:30.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:30.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:30.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:30.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:30.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:30.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:30.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:30.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:30.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:30.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:30.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:30.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:30.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:30.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:30.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:30.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:30.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:30.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:30.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:30.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:30.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:30.331][self$createEntryFromContent] Accession numbers: 16587.
biodb.TRACE[2022-10-15 08:03:30.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:30.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:30.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:30.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:30.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:30.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:30.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:30.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:30.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:30.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:30.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:30.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:30.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:30.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:30.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:30.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:30.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:30.348][private$loadEntries] Creating entries from ids [1]: "19804".
biodb.DEBUG[2022-10-15 08:03:30.349][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:30.350][cch$loadFileContent] Trying to load 1 files from cache: [1]: "19804".
biodb.TRACE[2022-10-15 08:03:30.351][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:30.352][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:30.352][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:30.353][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:30.354][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:30.355][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:30.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:30.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:30.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:30.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:30.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:30.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:30.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:30.364][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.DEBUG[2022-10-15 08:03:30.366][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:30.367][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:30.368][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.TRACE[2022-10-15 08:03:30.778][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804).
biodb.DEBUG[2022-10-15 08:03:31.200][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:31.205][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.content"
biodb.TRACE[2022-10-15 08:03:31.213][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.request"
biodb.TRACE[2022-10-15 08:03:31.220][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19804.xml"
biodb.DEBUG[2022-10-15 08:03:31.223][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:31.234][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:31.235][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:31.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:31.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:31.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:31.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:31.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:31.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:31.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:31.245][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:31.246][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:31.246][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.247][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:31.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:31.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.253][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:31.254][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:31.254][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.255][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.256][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:31.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:31.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.261][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:31.261][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:31.262][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.263][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.264][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:31.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:31.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.269][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:31.269][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:31.270][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.271][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.272][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:31.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:31.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.276][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:31.277][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:31.278][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.279][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:31.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:31.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.284][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:31.285][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:31.286][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.286][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.287][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:31.288][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:31.289][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.289][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.290][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:31.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:31.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.295][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:31.296][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:31.296][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.297][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:31.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:31.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.303][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:31.304][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:31.304][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.305][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:31.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:31.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.311][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:31.311][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:31.312][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.313][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.314][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:31.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:31.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.318][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:31.319][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:31.320][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.321][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.321][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:31.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:31.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:31.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:31.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:31.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:31.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:31.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:31.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:31.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:31.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:31.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:31.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:31.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:31.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:31.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:31.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:31.365][self$createEntryFromContent] Accession numbers: 19804.
biodb.TRACE[2022-10-15 08:03:31.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:31.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:31.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:31.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:31.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:31.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:31.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:31.390][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:03:31.405][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:31.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:31.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:31.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:31.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:31.412][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:31.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:31.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.419][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:31.420][private$selectFields]
biodb.TRACE[2022-10-15 08:03:31.420][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:03:31.421][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:03:31.422][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:31.422][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.423][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.424][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.425][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.425][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.426][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.427][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.428][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.428][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:31.429][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:31.430][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.430][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.431][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.432][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.433][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:03:31.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.443][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-10-15 08:03:31.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:31.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:31.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:31.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:31.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:31.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:31.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:31.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.457][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:31.458][private$selectFields]
biodb.TRACE[2022-10-15 08:03:31.458][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:03:31.459][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:03:31.460][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:31.461][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.461][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.462][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.463][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.463][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.464][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.465][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.466][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.466][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:31.467][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:31.468][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.468][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.469][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.470][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.471][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:03:31.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.480][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-10-15 08:03:31.481][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:31.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:31.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:31.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:31.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:31.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:31.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:31.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.494][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:31.495][private$selectFields]
biodb.TRACE[2022-10-15 08:03:31.496][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:03:31.497][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:03:31.497][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:31.498][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.499][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.499][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.500][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.501][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.502][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.502][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.503][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.504][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:31.504][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:31.505][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.506][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.507][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.507][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.508][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:03:31.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:31.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:31.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:31.518][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-10-15 08:03:31.518][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:03:31.519][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:03:31.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:31.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:31.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:31.526][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:31.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:31.527][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:31.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:31.556][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:03:31.559][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:31.559][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:31.561][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-10-15 08:03:31.965][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-10-15 08:03:32.388][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:32.394][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content"
biodb.TRACE[2022-10-15 08:03:32.402][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.request"
biodb.DEBUG[2022-10-15 08:03:32.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:32.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:32.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:32.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:32.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:32.412][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:32.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:32.414][private$loadEntries] Creating entries from ids [1]: "159630".
biodb.DEBUG[2022-10-15 08:03:32.415][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:32.416][cch$loadFileContent] Trying to load 1 files from cache: [1]: "159630".
biodb.TRACE[2022-10-15 08:03:32.417][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:32.417][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:32.418][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:32.419][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:32.420][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:32.420][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:32.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:32.423][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:32.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:32.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:32.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:32.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:32.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:32.430][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.DEBUG[2022-10-15 08:03:32.432][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:32.433][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:32.434][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.TRACE[2022-10-15 08:03:32.838][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630).
biodb.DEBUG[2022-10-15 08:03:33.991][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:33.996][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.content"
biodb.TRACE[2022-10-15 08:03:34.004][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.request"
biodb.TRACE[2022-10-15 08:03:34.011][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/159630.xml"
biodb.DEBUG[2022-10-15 08:03:34.014][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:34.024][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:34.025][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:34.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:34.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:34.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:34.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:34.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:34.032][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:34.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:34.035][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:34.036][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:34.036][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:34.037][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:34.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:34.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:34.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:34.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:34.042][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:34.043][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:34.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:34.044][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:34.045][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:34.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:34.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:34.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:34.050][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:34.051][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:34.051][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:34.052][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:34.053][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:34.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:34.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:34.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:34.058][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:34.058][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:34.059][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:34.060][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:34.061][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:34.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:34.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:34.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:34.065][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:34.066][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:34.067][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:34.067][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:34.068][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:34.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:34.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:34.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:34.073][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:34.073][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:34.074][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:34.075][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:34.075][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:34.076][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:34.077][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:34.078][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:34.078][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:34.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:34.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:34.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:34.083][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:34.084][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:34.084][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:34.085][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:34.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:34.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:34.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:34.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:34.090][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:34.091][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:34.092][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:34.093][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:34.093][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:34.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:34.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:34.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:34.098][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:34.099][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:34.100][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:34.100][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:34.101][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:34.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:34.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:34.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:34.106][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:34.106][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:34.107][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:34.108][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:34.109][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:34.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:34.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:34.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:34.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:34.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:34.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:34.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:34.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:34.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:34.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:34.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:34.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:34.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:34.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:34.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:34.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:34.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:34.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:34.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:34.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:34.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:34.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:34.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:34.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:34.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:34.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:34.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:34.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:34.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:34.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:34.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:34.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:34.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:34.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:34.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:34.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:34.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:34.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:34.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:34.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:34.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:34.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:34.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:34.151][self$createEntryFromContent] Accession numbers: 159630.
biodb.TRACE[2022-10-15 08:03:34.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:34.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:34.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:34.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:34.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:34.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:34.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:34.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:34.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:34.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:34.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:34.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:34.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:34.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:34.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:34.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:34.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:34.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:34.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:34.167][private$loadEntries] Creating entries from ids [1]: "160202".
biodb.DEBUG[2022-10-15 08:03:34.168][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:34.169][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160202".
biodb.TRACE[2022-10-15 08:03:34.170][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:34.171][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:34.171][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:34.172][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:34.173][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:34.173][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:34.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:34.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:34.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:34.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:34.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:34.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:34.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:34.183][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.DEBUG[2022-10-15 08:03:34.184][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:34.185][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:34.186][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.TRACE[2022-10-15 08:03:34.589][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202).
biodb.DEBUG[2022-10-15 08:03:35.008][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:35.013][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.content"
biodb.TRACE[2022-10-15 08:03:35.020][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.request"
biodb.TRACE[2022-10-15 08:03:35.027][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160202.xml"
biodb.DEBUG[2022-10-15 08:03:35.030][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:35.040][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:35.041][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:35.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:35.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:35.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:35.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:35.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:35.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:35.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:35.051][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:35.052][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:35.052][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:35.053][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:35.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:35.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:35.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:35.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:35.058][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:35.059][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:35.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:35.060][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:35.061][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:35.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:35.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:35.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:35.066][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:35.067][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:35.067][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:35.068][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:35.069][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:35.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:35.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:35.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:35.074][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:35.074][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:35.075][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:35.076][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:35.077][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:35.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:35.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:35.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:35.081][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:35.082][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:35.083][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:35.083][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:35.084][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:35.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:35.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:35.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:35.089][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:35.090][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:35.090][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:35.091][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:35.092][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:35.093][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:35.093][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:35.094][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:35.095][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:35.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:35.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:35.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:35.100][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:35.100][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:35.101][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:35.102][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:35.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:35.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:35.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:35.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:35.107][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:35.108][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:35.109][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:35.110][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:35.111][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:35.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:35.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:35.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:35.115][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:35.116][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:35.117][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:35.117][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:35.118][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:35.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:35.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:35.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:35.123][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:35.124][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:35.124][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:35.125][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:35.126][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:35.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:35.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:35.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:35.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:35.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:35.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:35.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:35.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:35.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:35.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:35.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:35.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:35.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:35.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:35.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:35.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:35.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:35.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:35.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:35.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:35.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:35.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:35.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:35.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:35.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:35.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:35.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:35.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:35.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:35.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:35.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:35.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:35.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:35.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:35.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:35.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:35.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:35.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:35.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:35.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:35.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:35.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:35.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:35.167][self$createEntryFromContent] Accession numbers: 160202.
biodb.TRACE[2022-10-15 08:03:35.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:35.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:35.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:35.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:35.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:35.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:35.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:35.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:35.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:35.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:35.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:35.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:35.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:35.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:35.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:35.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:35.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:35.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:35.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:35.184][private$loadEntries] Creating entries from ids [1]: "160393".
biodb.DEBUG[2022-10-15 08:03:35.185][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:35.186][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160393".
biodb.TRACE[2022-10-15 08:03:35.187][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:35.188][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:35.188][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:35.189][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:35.190][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:35.190][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:35.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:35.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:35.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:35.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:35.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:35.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:35.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:35.200][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.DEBUG[2022-10-15 08:03:35.202][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:35.202][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:35.203][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.TRACE[2022-10-15 08:03:35.609][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393).
biodb.DEBUG[2022-10-15 08:03:36.036][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:36.041][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.content"
biodb.TRACE[2022-10-15 08:03:36.048][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.request"
biodb.TRACE[2022-10-15 08:03:36.056][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160393.xml"
biodb.DEBUG[2022-10-15 08:03:36.058][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:36.069][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:36.070][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:36.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:36.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:36.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:36.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:36.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:36.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:36.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:36.080][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:36.081][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:36.081][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:36.082][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:36.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:36.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:36.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:36.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:36.088][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:36.089][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:36.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:36.090][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:36.091][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:36.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:36.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:36.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:36.096][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:36.096][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:36.097][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:36.098][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:36.099][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:36.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:36.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:36.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:36.104][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:36.104][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:36.105][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:36.106][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:36.107][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:36.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:36.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:36.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:36.111][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:36.112][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:36.113][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:36.113][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:36.114][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:36.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:36.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:36.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:36.119][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:36.120][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:36.121][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:36.121][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:36.122][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:36.123][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:36.124][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:36.124][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:36.125][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:36.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:36.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:36.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:36.130][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:36.131][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:36.132][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:36.132][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:36.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:36.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:36.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:36.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:36.138][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:36.139][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:36.139][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:36.140][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:36.141][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:36.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:36.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:36.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:36.146][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:36.146][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:36.147][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:36.148][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:36.149][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:36.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:36.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:36.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:36.153][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:36.154][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:36.155][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:36.155][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:36.156][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:36.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:36.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:36.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:36.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:36.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:36.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:36.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:36.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:36.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:36.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:36.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:36.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:36.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:36.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:36.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:36.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:36.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:36.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:36.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:36.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:36.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:36.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:36.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:36.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:36.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:36.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:36.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:36.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:36.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:36.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:36.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:36.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:36.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:36.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:36.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:36.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:36.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:36.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:36.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:36.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:36.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:36.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:36.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:36.199][self$createEntryFromContent] Accession numbers: 160393.
biodb.TRACE[2022-10-15 08:03:36.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:36.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:36.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:36.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:36.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:36.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:36.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:36.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:36.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:36.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:36.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:36.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:36.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:36.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:36.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:36.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:36.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:36.214][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:36.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:36.216][private$loadEntries] Creating entries from ids [1]: "160991".
biodb.DEBUG[2022-10-15 08:03:36.217][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:36.218][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160991".
biodb.TRACE[2022-10-15 08:03:36.219][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:36.219][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:36.220][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:36.221][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:36.222][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:36.222][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:36.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:36.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:36.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:36.229][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:36.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:36.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:36.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:36.232][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.DEBUG[2022-10-15 08:03:36.234][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:36.235][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:36.236][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.TRACE[2022-10-15 08:03:36.658][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991).
biodb.DEBUG[2022-10-15 08:03:37.099][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:37.104][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.content"
biodb.TRACE[2022-10-15 08:03:37.112][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.request"
biodb.TRACE[2022-10-15 08:03:37.119][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160991.xml"
biodb.DEBUG[2022-10-15 08:03:37.122][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:37.133][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:37.134][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:37.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:37.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:37.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:37.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:37.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:37.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:37.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:37.144][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:37.144][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:37.145][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:37.146][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:37.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:37.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:37.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:37.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:37.152][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:37.152][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:37.153][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:37.154][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:37.155][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:37.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:37.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:37.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:37.159][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:37.160][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:37.161][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:37.162][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:37.163][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:37.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:37.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:37.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:37.167][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:37.168][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:37.169][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:37.169][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:37.170][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:37.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:37.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:37.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:37.175][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:37.176][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:37.176][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:37.177][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:37.178][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:37.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:37.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:37.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:37.183][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:37.183][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:37.184][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:37.185][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:37.186][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:37.186][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:37.187][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:37.188][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:37.189][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:37.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:37.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:37.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:37.193][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:37.194][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:37.195][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:37.196][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:37.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:37.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:37.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:37.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:37.201][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:37.202][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:37.203][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:37.203][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:37.204][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:37.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:37.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:37.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:37.209][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:37.210][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:37.210][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:37.211][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:37.212][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:37.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:37.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:37.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:37.217][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:37.217][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:37.218][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:37.219][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:37.220][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:37.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:37.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:37.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:37.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:37.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:37.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:37.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:37.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:37.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:37.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:37.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:37.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:37.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:37.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:37.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:37.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:37.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:37.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:37.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:37.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:37.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:37.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:37.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:37.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:37.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:37.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:37.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:37.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:37.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:37.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:37.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:37.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:37.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:37.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:37.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:37.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:37.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:37.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:37.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:37.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:37.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:37.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:37.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:37.262][self$createEntryFromContent] Accession numbers: 160991.
biodb.TRACE[2022-10-15 08:03:37.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:37.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:37.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:37.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:37.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:37.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:37.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:37.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:37.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:37.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:37.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:37.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:37.271][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:37.272][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:37.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:37.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:37.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:37.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:37.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:37.279][private$loadEntries] Creating entries from ids [1]: "164975".
biodb.DEBUG[2022-10-15 08:03:37.280][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:37.281][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164975".
biodb.TRACE[2022-10-15 08:03:37.282][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:37.283][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:37.283][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:37.284][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:37.285][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:37.286][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:37.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:37.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:37.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:37.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:37.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:37.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:37.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:37.295][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.DEBUG[2022-10-15 08:03:37.297][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:37.298][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:37.299][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.TRACE[2022-10-15 08:03:37.704][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975).
biodb.DEBUG[2022-10-15 08:03:38.124][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:38.129][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.content"
biodb.TRACE[2022-10-15 08:03:38.137][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.request"
biodb.TRACE[2022-10-15 08:03:38.144][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164975.xml"
biodb.DEBUG[2022-10-15 08:03:38.147][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:38.157][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:38.158][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:38.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:38.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:38.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:38.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:38.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:38.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:38.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:38.168][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:38.169][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:38.170][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:38.171][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:38.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:38.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:38.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:38.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:38.176][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:38.177][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:38.178][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:38.179][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:38.179][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:38.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:38.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:38.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:38.184][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:38.185][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:38.186][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:38.186][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:38.187][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:38.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:38.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:38.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:38.192][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:38.193][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:38.194][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:38.194][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:38.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:38.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:38.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:38.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:38.200][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:38.201][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:38.201][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:38.202][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:38.203][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:38.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:38.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:38.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:38.208][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:38.209][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:38.209][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:38.210][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:38.211][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:38.212][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:38.212][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:38.213][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:38.214][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:38.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:38.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:38.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:38.219][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:38.219][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:38.220][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:38.221][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:38.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:38.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:38.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:38.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:38.226][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:38.227][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:38.228][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:38.228][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:38.229][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:38.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:38.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:38.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:38.234][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:38.235][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:38.236][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:38.236][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:38.237][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:38.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:38.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:38.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:38.242][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:38.243][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:38.243][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:38.244][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:38.245][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:38.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:38.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:38.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:38.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:38.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:38.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:38.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:38.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:38.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:38.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:38.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:38.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:38.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:38.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:38.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:38.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:38.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:38.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:38.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:38.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:38.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:38.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:38.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:38.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:38.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:38.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:38.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:38.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:38.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:38.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:38.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:38.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:38.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:38.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:38.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:38.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:38.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:38.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:38.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:38.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:38.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:38.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:38.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:38.288][self$createEntryFromContent] Accession numbers: 164975.
biodb.TRACE[2022-10-15 08:03:38.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:38.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:38.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:38.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:38.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:38.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:38.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:38.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:38.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:38.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:38.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:38.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:38.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:38.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:38.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:38.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:38.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:38.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:38.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:38.305][private$loadEntries] Creating entries from ids [1]: "164994".
biodb.DEBUG[2022-10-15 08:03:38.306][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:38.307][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164994".
biodb.TRACE[2022-10-15 08:03:38.308][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:38.308][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:38.309][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:38.310][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:38.311][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:38.311][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:38.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:38.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:38.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:38.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:38.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:38.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:38.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:38.321][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.DEBUG[2022-10-15 08:03:38.323][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:38.324][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:38.325][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.TRACE[2022-10-15 08:03:38.737][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994).
biodb.DEBUG[2022-10-15 08:03:39.372][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:39.377][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.content"
biodb.TRACE[2022-10-15 08:03:39.385][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.request"
biodb.TRACE[2022-10-15 08:03:39.392][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164994.xml"
biodb.DEBUG[2022-10-15 08:03:39.395][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:39.406][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:39.407][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:39.408][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:39.409][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:39.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:39.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:39.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:39.415][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:39.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:39.417][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:39.418][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:39.419][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:39.420][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:39.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:39.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:39.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:39.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:39.425][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:39.426][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:39.427][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:39.428][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:39.428][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:39.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:39.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:39.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:39.433][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:39.434][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:39.435][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:39.436][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:39.437][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:39.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:39.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:39.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:39.441][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:39.442][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:39.443][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:39.444][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:39.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:39.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:39.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:39.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:39.449][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:39.450][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:39.451][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:39.451][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:39.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:39.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:39.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:39.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:39.457][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:39.458][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:39.459][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:39.459][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:39.460][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:39.461][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:39.462][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:39.462][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:39.463][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:39.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:39.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:39.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:39.468][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:39.469][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:39.470][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:39.470][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:39.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:39.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:39.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:39.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:39.478][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:39.479][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:39.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:39.481][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:39.482][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:39.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:39.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:39.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:39.488][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:39.489][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:39.490][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:39.490][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:39.491][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:39.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:39.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:39.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:39.496][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:39.497][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:39.498][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:39.499][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:39.500][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:39.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:39.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:39.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:39.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:39.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:39.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:39.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:39.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:39.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:39.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:39.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:39.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:39.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:39.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:39.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:39.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:39.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:39.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:39.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:39.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:39.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:39.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:39.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:39.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:39.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:39.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:39.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:39.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:39.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:39.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:39.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:39.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:39.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:39.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:39.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:39.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:39.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:39.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:39.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:39.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:39.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:39.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:39.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:39.545][self$createEntryFromContent] Accession numbers: 164994.
biodb.TRACE[2022-10-15 08:03:39.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:39.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:39.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:39.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:39.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:39.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:39.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:39.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:39.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:39.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:39.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:39.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:39.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:39.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:39.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:39.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:39.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:39.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:39.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:39.563][private$loadEntries] Creating entries from ids [1]: "169251".
biodb.DEBUG[2022-10-15 08:03:39.564][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:39.565][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169251".
biodb.TRACE[2022-10-15 08:03:39.566][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:39.567][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:39.568][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:39.568][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:39.569][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:39.570][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:39.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:39.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:39.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:39.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:39.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:39.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:39.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:39.580][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.DEBUG[2022-10-15 08:03:39.582][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:39.583][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:39.584][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.TRACE[2022-10-15 08:03:40.433][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251).
biodb.DEBUG[2022-10-15 08:03:40.855][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:40.860][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.content"
biodb.TRACE[2022-10-15 08:03:40.868][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.request"
biodb.TRACE[2022-10-15 08:03:40.876][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169251.xml"
biodb.DEBUG[2022-10-15 08:03:40.878][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:40.889][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:40.890][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:40.891][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:40.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:40.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:40.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:40.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:40.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:40.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:40.900][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:40.901][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:40.902][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:40.902][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:40.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:40.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:40.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:40.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:40.908][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:40.909][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:40.910][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:40.910][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:40.911][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:40.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:40.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:40.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:40.916][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:40.917][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:40.918][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:40.918][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:40.919][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:40.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:40.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:40.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:40.924][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:40.925][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:40.926][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:40.926][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:40.927][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:40.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:40.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:40.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:40.932][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:40.933][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:40.933][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:40.934][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:40.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:40.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:40.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:40.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:40.940][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:40.940][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:40.941][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:40.942][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:40.943][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:40.944][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:40.944][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:40.945][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:40.946][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:40.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:40.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:40.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:40.951][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:40.951][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:40.952][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:40.953][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:40.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:40.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:40.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:40.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:40.959][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:40.959][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:40.960][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:40.961][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:40.962][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:40.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:40.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:40.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:40.967][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:40.967][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:40.968][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:40.969][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:40.970][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:40.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:40.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:40.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:40.974][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:40.975][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:40.976][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:40.976][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:40.977][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:40.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:40.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:40.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:40.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:40.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:40.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:40.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:40.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:40.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:40.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:40.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:40.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:40.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:40.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:40.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:40.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:40.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:40.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:40.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:40.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:40.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:40.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:40.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:40.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:40.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:40.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:40.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:40.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:41.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:41.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:41.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:41.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:41.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:41.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:41.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:41.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:41.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:41.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:41.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:41.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:41.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:41.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:41.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:41.019][self$createEntryFromContent] Accession numbers: 169251.
biodb.TRACE[2022-10-15 08:03:41.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:41.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:41.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:41.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:41.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:41.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:41.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:41.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:41.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:41.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:41.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:41.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:41.029][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:03:41.031][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:41.032][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:41.033][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-10-15 08:03:41.437][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-10-15 08:03:41.859][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:41.864][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content"
biodb.TRACE[2022-10-15 08:03:41.872][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.request"
biodb.DEBUG[2022-10-15 08:03:41.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:41.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:41.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:41.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:41.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:41.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:41.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:41.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:41.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:41.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:41.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:41.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:41.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:41.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:41.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:41.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:41.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:41.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:41.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:41.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:41.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:41.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:41.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:41.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:41.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:41.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:41.902][private$loadEntries] Creating entries from ids [1]: "71954".
biodb.DEBUG[2022-10-15 08:03:41.903][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:41.904][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71954".
biodb.TRACE[2022-10-15 08:03:41.905][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:41.906][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:41.906][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:41.907][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:41.908][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:41.909][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:41.911][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:41.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:41.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:41.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:41.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:41.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:41.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:41.919][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.DEBUG[2022-10-15 08:03:41.921][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:41.921][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:41.922][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.TRACE[2022-10-15 08:03:42.327][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954).
biodb.DEBUG[2022-10-15 08:03:42.748][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:42.753][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.content"
biodb.TRACE[2022-10-15 08:03:42.761][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.request"
biodb.TRACE[2022-10-15 08:03:42.768][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71954.xml"
biodb.DEBUG[2022-10-15 08:03:42.771][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:42.781][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:42.782][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:42.783][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:42.784][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:42.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:42.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:42.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:42.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:42.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:42.792][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:42.793][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:42.794][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:42.795][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:42.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:42.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:42.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:42.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:42.801][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:42.802][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:42.802][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:42.803][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:42.804][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:42.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:42.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:42.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:42.809][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:42.810][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:42.810][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:42.811][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:42.812][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:42.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:42.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:42.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:42.817][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:42.818][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:42.819][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:42.819][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:42.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:42.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:42.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:42.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:42.825][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:42.826][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:42.827][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:42.827][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:42.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:42.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:42.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:42.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:42.842][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:42.842][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:42.843][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:42.844][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:42.845][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:42.845][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:42.846][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:42.847][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:42.848][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:42.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:42.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:42.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:42.852][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:42.853][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:42.854][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:42.855][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:42.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:42.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:42.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:42.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:42.860][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:42.861][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:42.862][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:42.862][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:42.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:42.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:42.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:42.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:42.868][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:42.869][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:42.870][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:42.870][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:42.871][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:42.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:42.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:42.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:42.876][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:42.877][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:42.878][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:42.878][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:42.879][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:42.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:42.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:42.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:42.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:42.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:42.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:42.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:42.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:42.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:42.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:42.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:42.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:42.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:42.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:42.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:42.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:42.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:42.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:42.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:42.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:42.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:42.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:42.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:42.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:42.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:42.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:42.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:42.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:42.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:42.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:42.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:42.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:42.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:42.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:42.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:42.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:42.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:42.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:42.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:42.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:42.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:42.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:42.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:42.915][self$createEntryFromContent] Accession numbers: 71954.
biodb.TRACE[2022-10-15 08:03:42.916][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:42.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:42.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:42.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:42.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:42.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:42.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:42.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:42.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:42.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:42.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:42.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:42.926][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:03:42.928][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:42.929][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:42.930][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-10-15 08:03:43.343][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-10-15 08:03:43.952][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:43.958][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.content"
biodb.TRACE[2022-10-15 08:03:43.966][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.request"
biodb.DEBUG[2022-10-15 08:03:43.971][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:43.972][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:43.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:43.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:43.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:43.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:43.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:43.979][private$loadEntries] Creating entries from ids [1]: "636".
biodb.DEBUG[2022-10-15 08:03:43.980][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:43.981][cch$loadFileContent] Trying to load 1 files from cache: [1]: "636".
biodb.TRACE[2022-10-15 08:03:43.982][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:43.983][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:43.984][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:43.985][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:43.985][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:43.986][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:43.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:43.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:43.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:43.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:43.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:43.995][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:43.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:43.996][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.DEBUG[2022-10-15 08:03:43.998][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:43.999][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:44.000][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.TRACE[2022-10-15 08:03:44.407][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636).
biodb.DEBUG[2022-10-15 08:03:44.828][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:44.833][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.content"
biodb.TRACE[2022-10-15 08:03:44.841][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.request"
biodb.TRACE[2022-10-15 08:03:44.848][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/636.xml"
biodb.DEBUG[2022-10-15 08:03:44.850][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:44.870][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:44.871][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:44.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:44.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:44.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:44.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:44.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:44.878][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:44.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:44.881][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:44.881][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:44.882][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:44.883][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:44.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:44.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:44.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:44.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:44.888][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:44.889][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:44.890][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:44.891][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:44.891][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:44.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:44.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:44.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:44.896][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:44.897][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:44.898][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:44.898][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:44.899][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:44.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:44.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:44.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:44.904][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:44.905][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:44.905][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:44.906][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:44.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:44.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:44.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:44.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:44.911][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:44.912][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:44.913][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:44.914][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:44.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:44.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:44.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:44.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:44.919][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:44.920][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:44.921][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:44.921][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:44.922][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:44.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:44.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:44.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:44.927][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:44.928][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:44.928][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:44.929][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:44.930][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:44.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:44.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:44.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:44.935][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:44.935][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:44.936][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:44.937][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:44.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:44.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:44.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:44.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:44.942][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:44.943][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:44.944][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:44.944][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:44.946][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:44.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:44.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:44.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:44.950][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:44.951][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:44.952][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:44.952][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:44.953][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:44.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:44.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:44.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:44.958][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:44.959][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:44.959][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:44.960][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:44.961][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:44.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:44.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:44.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:44.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:44.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:44.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:44.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:44.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:44.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:44.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:44.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:44.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:44.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:44.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:44.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:44.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:44.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:44.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:44.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:44.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:44.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:44.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:44.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:44.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:44.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:44.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:44.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:44.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:44.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:44.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:44.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:44.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:44.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:44.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:44.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:44.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:44.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:44.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:44.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:44.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:44.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:44.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:44.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:44.997][self$createEntryFromContent] Accession numbers: 636.
biodb.TRACE[2022-10-15 08:03:44.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:44.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:44.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:45.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:45.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:45.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:45.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:45.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:45.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:45.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:45.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:45.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:45.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:45.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:45.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:45.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:45.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:45.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:45.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:45.015][private$loadEntries] Creating entries from ids [1]: "3017".
biodb.DEBUG[2022-10-15 08:03:45.015][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:45.017][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3017".
biodb.TRACE[2022-10-15 08:03:45.018][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:45.018][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:45.019][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:45.020][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:45.021][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:45.021][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:45.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:45.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:45.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:45.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:45.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:45.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:45.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:45.031][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.DEBUG[2022-10-15 08:03:45.033][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:45.034][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:45.035][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.TRACE[2022-10-15 08:03:45.440][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017).
biodb.DEBUG[2022-10-15 08:03:45.860][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:45.866][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.content"
biodb.TRACE[2022-10-15 08:03:45.873][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.request"
biodb.TRACE[2022-10-15 08:03:45.881][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3017.xml"
biodb.DEBUG[2022-10-15 08:03:45.883][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:45.901][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:45.902][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:45.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:45.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:45.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:45.908][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:45.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:45.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:45.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:45.912][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:45.912][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:45.913][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:45.914][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:45.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:45.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:45.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:45.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:45.919][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:45.920][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:45.921][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:45.922][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:45.922][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:45.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:45.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:45.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:45.927][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:45.928][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:45.929][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:45.929][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:45.930][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:45.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:45.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:45.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:45.935][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:45.936][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:45.936][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:45.937][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:45.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:45.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:45.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:45.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:45.943][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:45.943][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:45.944][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:45.945][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:45.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:45.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:45.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:45.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:45.950][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:45.951][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:45.952][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:45.952][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:45.953][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:45.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:45.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:45.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:45.958][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:45.959][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:45.959][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:45.960][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:45.961][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:45.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:45.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:45.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:45.966][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:45.966][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:45.967][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:45.968][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:45.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:45.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:45.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:45.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:45.973][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:45.974][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:45.975][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:45.976][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:45.977][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:45.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:45.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:45.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:45.981][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:45.982][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:45.983][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:45.984][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:45.984][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:45.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:45.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:45.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:45.989][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:45.990][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:45.991][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:45.991][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:45.992][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:45.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:45.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:45.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:45.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:45.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:45.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:45.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:46.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:46.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:46.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:46.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:46.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:46.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:46.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:46.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:46.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:46.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:46.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:46.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:46.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:46.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:46.028][self$createEntryFromContent] Accession numbers: 3017.
biodb.TRACE[2022-10-15 08:03:46.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:46.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:46.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:46.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:46.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:46.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:46.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:46.038][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:03:46.039][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:46.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:46.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:46.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:46.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:46.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:46.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:46.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.052][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:46.053][private$selectFields]
biodb.TRACE[2022-10-15 08:03:46.054][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:03:46.055][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:03:46.055][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:46.056][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.057][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.057][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.058][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.059][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.060][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.061][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.062][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:46.062][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:46.063][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.064][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.065][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.065][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.066][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:03:46.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.076][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-10-15 08:03:46.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:46.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:46.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:46.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:46.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:46.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:46.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:46.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.090][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:46.091][private$selectFields]
biodb.TRACE[2022-10-15 08:03:46.092][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:03:46.092][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:03:46.093][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:46.094][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.095][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.095][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.096][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.097][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.097][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.098][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.099][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.100][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:46.100][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:46.101][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.102][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.103][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.103][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.104][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:03:46.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.114][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2022-10-15 08:03:46.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:46.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:46.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:46.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:46.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:46.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:46.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:46.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.133][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:46.133][private$selectFields]
biodb.TRACE[2022-10-15 08:03:46.134][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:03:46.135][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:03:46.135][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:46.136][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.137][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.138][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.139][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.140][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.140][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.141][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.142][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:46.143][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:46.143][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.144][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.145][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.145][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.146][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:03:46.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.156][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2022-10-15 08:03:46.156][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:03:46.157][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-10-15 08:03:46.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.186][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:46.237][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:46.238][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:46.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:46.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:46.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:46.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:46.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:46.273][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:03:46.275][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:03:46.276][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2022-10-15 08:03:46.277][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:03:46.279][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2022-10-15 08:03:46.281][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:03:46.283][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:03:46.284][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2022-10-15 08:03:46.285][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:03:46.286][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2022-10-15 08:03:46.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:46.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:46.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:46.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:46.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:46.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:46.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:46.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:46.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:46.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:46.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:46.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:46.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:46.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:46.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:46.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:46.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:46.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:46.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:46.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:46.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:46.327][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:46.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:46.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:46.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:46.353][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:03:46.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:46.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:46.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:46.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:46.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:46.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:46.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:46.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.367][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:46.368][private$selectFields]
biodb.TRACE[2022-10-15 08:03:46.369][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:03:46.369][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:03:46.370][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:46.371][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.372][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.372][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.373][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.374][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.374][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.375][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.376][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.377][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:46.377][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:46.378][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.379][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.379][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.380][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.381][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:03:46.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.390][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-10-15 08:03:46.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:46.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:46.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:46.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:46.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:46.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:46.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:46.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.426][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:46.426][private$selectFields]
biodb.TRACE[2022-10-15 08:03:46.427][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:03:46.428][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:03:46.429][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:46.429][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.430][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.431][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.431][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.432][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.433][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.434][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.434][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.435][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:46.442][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:46.443][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.444][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.444][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.445][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.446][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:03:46.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.455][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-10-15 08:03:46.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:46.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:46.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:46.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:46.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:46.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:46.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:46.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.470][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:46.471][private$selectFields]
biodb.TRACE[2022-10-15 08:03:46.472][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:03:46.472][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:03:46.473][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:46.474][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.474][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.475][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.476][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.477][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.477][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.478][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.479][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.479][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:46.480][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:46.481][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.482][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.482][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.483][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.484][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:03:46.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:46.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:46.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:46.493][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-10-15 08:03:46.494][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:03:46.495][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:03:46.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:46.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:46.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:46.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:46.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:46.503][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:46.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:46.532][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:03:46.535][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:46.536][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:46.537][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-10-15 08:03:46.944][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-10-15 08:03:47.374][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:47.380][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content"
biodb.TRACE[2022-10-15 08:03:47.388][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.request"
biodb.DEBUG[2022-10-15 08:03:47.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:47.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:47.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:47.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:47.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:47.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:47.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:47.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:47.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:47.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:47.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:47.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:47.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:47.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:47.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:47.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:47.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:47.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:47.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:47.408][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:47.409][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:47.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:47.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:47.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:47.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:47.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:47.416][private$loadEntries] Creating entries from ids [1]: "91601".
biodb.DEBUG[2022-10-15 08:03:47.417][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:47.418][cch$loadFileContent] Trying to load 1 files from cache: [1]: "91601".
biodb.TRACE[2022-10-15 08:03:47.419][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:47.420][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:47.420][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:47.421][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:47.422][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:47.423][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:47.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:47.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:47.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:47.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:47.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:47.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:47.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:47.433][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.DEBUG[2022-10-15 08:03:47.435][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:47.436][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:47.437][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.TRACE[2022-10-15 08:03:47.844][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601).
biodb.DEBUG[2022-10-15 08:03:48.304][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:48.309][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.content"
biodb.TRACE[2022-10-15 08:03:48.317][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.request"
biodb.TRACE[2022-10-15 08:03:48.324][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91601.xml"
biodb.DEBUG[2022-10-15 08:03:48.327][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:48.338][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:48.339][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:48.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:48.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:48.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:48.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:48.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:48.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:48.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:48.349][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:48.350][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:48.351][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:48.351][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:48.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:48.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:48.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:48.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:48.357][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:48.358][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:48.359][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:48.359][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:48.360][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:48.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:48.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:48.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:48.365][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:48.366][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:48.367][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:48.367][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:48.368][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:48.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:48.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:48.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:48.373][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:48.374][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:48.374][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:48.375][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:48.376][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:48.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:48.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:48.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:48.381][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:48.382][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:48.382][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:48.383][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:48.384][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:48.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:48.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:48.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:48.389][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:48.389][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:48.390][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:48.391][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:48.392][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:48.392][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:48.393][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:48.394][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:48.395][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:48.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:48.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:48.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:48.399][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:48.400][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:48.401][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:48.401][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:48.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:48.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:48.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:48.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:48.407][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:48.408][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:48.409][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:48.409][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:48.410][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:48.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:48.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:48.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:48.415][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:48.416][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:48.416][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:48.417][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:48.418][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:48.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:48.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:48.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:48.423][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:48.424][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:48.424][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:48.425][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:48.426][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:48.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:48.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:48.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:48.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:48.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:48.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:48.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:48.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:48.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:48.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:48.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:48.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:48.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:48.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:48.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:48.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:48.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:48.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:48.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:48.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:48.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:48.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:48.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:48.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:48.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:48.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:48.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:48.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:48.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:48.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:48.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:48.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:48.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:48.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:48.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:48.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:48.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:48.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:48.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:48.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:48.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:48.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:48.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:48.468][self$createEntryFromContent] Accession numbers: 91601.
biodb.TRACE[2022-10-15 08:03:48.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:48.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:48.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:48.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:48.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:48.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:48.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:48.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:48.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:48.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:48.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:48.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:48.478][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:48.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:48.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:48.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:48.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:48.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:48.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:48.485][private$loadEntries] Creating entries from ids [1]: "95147".
biodb.DEBUG[2022-10-15 08:03:48.486][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:48.487][cch$loadFileContent] Trying to load 1 files from cache: [1]: "95147".
biodb.TRACE[2022-10-15 08:03:48.488][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:48.489][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:48.490][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:48.490][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:48.491][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:48.492][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:48.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:48.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:48.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:48.499][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:48.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:48.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:48.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:48.502][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.DEBUG[2022-10-15 08:03:48.503][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:48.504][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:48.505][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.TRACE[2022-10-15 08:03:48.913][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147).
biodb.DEBUG[2022-10-15 08:03:49.912][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:49.917][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.content"
biodb.TRACE[2022-10-15 08:03:49.924][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.request"
biodb.TRACE[2022-10-15 08:03:49.932][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/95147.xml"
biodb.DEBUG[2022-10-15 08:03:49.934][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:49.945][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:49.946][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:49.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:49.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:49.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:49.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:49.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:49.954][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:49.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:49.956][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:49.957][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:49.957][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:49.958][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:49.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:49.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:49.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:49.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:49.964][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:49.965][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:49.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:49.966][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:49.967][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:49.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:49.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:49.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:49.972][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:49.972][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:49.973][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:49.974][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:49.975][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:49.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:49.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:49.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:49.979][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:49.980][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:49.981][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:49.982][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:49.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:49.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:49.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:49.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:49.987][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:49.988][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:49.989][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:49.989][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:49.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:49.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:49.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:49.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:49.995][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:49.996][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:49.996][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:49.997][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:49.998][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:49.999][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:49.999][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.000][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.001][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:50.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:50.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.006][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:50.006][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:50.007][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.008][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:50.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:50.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.013][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:50.014][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:50.015][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.016][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.017][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:50.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:50.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.021][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:50.022][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:50.023][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.023][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.024][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:50.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:50.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.029][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:50.030][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:50.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.031][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.032][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:50.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:50.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:50.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:50.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:50.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:50.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:50.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:50.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:50.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:50.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:50.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:50.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:50.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:50.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:50.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:50.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:50.074][self$createEntryFromContent] Accession numbers: 95147.
biodb.TRACE[2022-10-15 08:03:50.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:50.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:50.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:50.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:50.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:50.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:50.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:50.083][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:03:50.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:50.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:50.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:50.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:50.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:50.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:50.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:50.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.098][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:50.098][private$selectFields]
biodb.TRACE[2022-10-15 08:03:50.099][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:03:50.100][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:03:50.101][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:50.101][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.102][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.103][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.103][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.104][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.105][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.105][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.106][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.107][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:50.108][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:50.108][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.109][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.110][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.110][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.111][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:03:50.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.121][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-10-15 08:03:50.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:50.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:50.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:50.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:50.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:50.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:50.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:50.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.135][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:50.136][private$selectFields]
biodb.TRACE[2022-10-15 08:03:50.136][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:03:50.137][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:03:50.138][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:50.139][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.139][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.140][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.141][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.141][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.142][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.143][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.144][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.144][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:50.145][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:50.146][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.146][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.147][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.148][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.149][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:03:50.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.158][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2022-10-15 08:03:50.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:50.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:50.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:50.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:50.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:50.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:50.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:50.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.173][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:50.173][private$selectFields]
biodb.TRACE[2022-10-15 08:03:50.174][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:03:50.175][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:03:50.175][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:50.176][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.177][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.178][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.178][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.179][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.180][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.180][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.181][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.182][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:50.183][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:50.183][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.184][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.185][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.185][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.186][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:03:50.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:50.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:50.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:50.196][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2022-10-15 08:03:50.196][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:03:50.197][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:03:50.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:50.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:50.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:50.204][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:50.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:50.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:50.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:50.234][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:03:50.236][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:50.237][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:50.238][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-10-15 08:03:52.402][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-10-15 08:03:52.832][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:52.837][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content"
biodb.TRACE[2022-10-15 08:03:52.852][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.request"
biodb.DEBUG[2022-10-15 08:03:52.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:52.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:52.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:52.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:52.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:52.862][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:52.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:52.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:52.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:52.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:52.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:52.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:52.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:52.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:52.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:52.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:52.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:52.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:52.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:52.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:52.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:52.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:52.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:52.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:52.878][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:52.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:52.880][private$loadEntries] Creating entries from ids [1]: "64199".
biodb.DEBUG[2022-10-15 08:03:52.881][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:52.882][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64199".
biodb.TRACE[2022-10-15 08:03:52.883][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:52.883][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:52.884][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:52.885][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:52.886][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:52.886][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:52.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:52.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:52.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:52.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:52.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:52.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:52.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:52.896][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.DEBUG[2022-10-15 08:03:52.898][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:52.898][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:52.900][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.TRACE[2022-10-15 08:03:53.337][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199).
biodb.DEBUG[2022-10-15 08:03:53.760][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:53.765][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.content"
biodb.TRACE[2022-10-15 08:03:53.772][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.request"
biodb.TRACE[2022-10-15 08:03:53.779][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64199.xml"
biodb.DEBUG[2022-10-15 08:03:53.782][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:53.792][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:53.793][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:53.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:53.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:53.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:53.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:53.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:53.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:53.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:53.803][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:53.803][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:53.804][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:53.805][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:53.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:53.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:53.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:53.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:53.810][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:53.811][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:53.812][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:53.812][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:53.813][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:53.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:53.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:53.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:53.818][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:53.819][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:53.819][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:53.820][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:53.821][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:53.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:53.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:53.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:53.825][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:53.826][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:53.827][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:53.827][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:53.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:53.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:53.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:53.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:53.833][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:53.833][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:53.834][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:53.835][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:53.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:53.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:53.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:53.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:53.840][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:53.841][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:53.841][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:53.842][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:53.843][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:53.844][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:53.844][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:53.845][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:53.846][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:53.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:53.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:53.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:53.850][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:53.851][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:53.852][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:53.852][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:53.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:53.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:53.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:53.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:53.858][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:53.858][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:53.859][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:53.860][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:53.861][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:53.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:53.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:53.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:53.865][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:53.866][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:53.867][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:53.867][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:53.868][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:53.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:53.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:53.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:53.873][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:53.873][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:53.874][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:53.875][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:53.876][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:53.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:53.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:53.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:53.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:53.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:53.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:53.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:53.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:53.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:53.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:53.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:53.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:53.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:53.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:53.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:53.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:53.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:53.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:53.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:53.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:53.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:53.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:53.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:53.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:53.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:53.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:53.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:53.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:53.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:53.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:53.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:53.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:53.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:53.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:53.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:53.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:53.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:53.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:53.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:53.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:53.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:53.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:53.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:53.916][self$createEntryFromContent] Accession numbers: 64199.
biodb.TRACE[2022-10-15 08:03:53.917][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:53.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:53.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:53.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:53.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:53.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:53.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:53.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:53.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:53.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:53.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:53.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:53.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:53.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:53.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:53.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:53.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:53.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:53.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:53.933][private$loadEntries] Creating entries from ids [1]: "65648".
biodb.DEBUG[2022-10-15 08:03:53.933][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:53.935][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65648".
biodb.TRACE[2022-10-15 08:03:53.935][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:53.936][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:53.937][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:53.938][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:53.938][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:53.939][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:53.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:53.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:53.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:53.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:53.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:53.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:53.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:53.948][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.DEBUG[2022-10-15 08:03:53.950][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:53.951][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:53.952][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.TRACE[2022-10-15 08:03:54.358][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648).
biodb.DEBUG[2022-10-15 08:03:54.800][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:54.805][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.content"
biodb.TRACE[2022-10-15 08:03:54.812][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.request"
biodb.TRACE[2022-10-15 08:03:54.819][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65648.xml"
biodb.DEBUG[2022-10-15 08:03:54.822][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:54.833][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:54.834][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:54.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:54.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:54.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:54.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:54.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:54.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:54.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:54.847][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:54.848][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:54.849][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.849][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:54.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:54.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.856][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:54.856][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:54.857][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.858][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.859][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:54.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:54.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.864][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:54.864][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:54.865][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.866][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.867][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:54.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:54.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.872][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:54.872][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:54.873][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.874][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.875][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:54.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:54.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.880][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:54.880][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:54.881][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.882][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.883][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:54.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:54.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.888][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:54.888][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:54.889][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.890][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.891][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:54.892][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:54.892][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.893][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.894][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:54.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:54.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.899][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:54.900][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:54.900][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.901][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:54.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:54.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.907][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:54.908][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:54.908][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.909][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.910][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:54.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:54.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.915][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:54.916][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:54.917][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.917][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.918][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:54.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:54.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.923][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:54.924][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:54.925][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.925][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.926][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:54.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:54.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:54.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:54.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:54.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:54.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:54.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:54.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:54.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:54.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:54.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:54.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:54.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:54.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:54.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:54.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:54.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:54.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:54.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:54.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:54.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:54.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:54.969][self$createEntryFromContent] Accession numbers: 65648.
biodb.TRACE[2022-10-15 08:03:54.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:54.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:54.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:54.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:54.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:54.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:54.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:54.978][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:03:54.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:54.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:54.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:54.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:54.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:54.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:54.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:54.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:54.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:54.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:54.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:54.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.992][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:54.993][private$selectFields]
biodb.TRACE[2022-10-15 08:03:54.993][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:03:54.994][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:03:54.995][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:54.995][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:54.996][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:54.997][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:54.997][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:54.998][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:54.999][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:54.999][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.000][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.001][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:55.001][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:55.002][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.003][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.003][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.004][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.005][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:03:55.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.014][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-10-15 08:03:55.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:55.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:55.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:55.019][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:55.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:55.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:55.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:55.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.028][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:55.028][private$selectFields]
biodb.TRACE[2022-10-15 08:03:55.029][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:03:55.030][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:03:55.030][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:55.031][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.032][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.032][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.033][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.034][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.035][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.035][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.036][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.037][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:55.037][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:55.038][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.039][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.039][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.040][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.041][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:03:55.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.050][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2022-10-15 08:03:55.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:55.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:55.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:55.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:55.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:55.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:55.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:55.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.064][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:55.065][private$selectFields]
biodb.TRACE[2022-10-15 08:03:55.065][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:03:55.066][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:03:55.067][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:55.067][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.068][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.069][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.069][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.070][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.071][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.072][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.072][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.073][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:55.074][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:55.074][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.075][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.076][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.076][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.077][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:03:55.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.086][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2022-10-15 08:03:55.087][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:03:55.088][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-10-15 08:03:55.093][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:03:55.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:03:55.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.096][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:03:55.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:03:55.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.099][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:03:55.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:03:55.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-10-15 08:03:55.102][biodb::testThat]
biodb.INFO [2022-10-15 08:03:55.103][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2022-10-15 08:03:55.104][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:03:55.104][biodb::testThat]
biodb.TRACE[2022-10-15 08:03:55.107][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:03:55.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:03:55.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.110][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:03:55.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:03:55.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.112][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:03:55.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:03:55.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:55.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:55.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:55.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:55.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:55.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:55.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:55.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:55.193][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:03:55.195][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:03:55.196][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2022-10-15 08:03:55.197][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:03:55.198][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2022-10-15 08:03:55.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:55.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:55.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:55.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:55.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:55.206][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:55.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:55.208][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:55.216][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:03:55.218][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:03:55.219][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2022-10-15 08:03:55.220][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:03:55.221][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2022-10-15 08:03:55.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:55.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:55.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:55.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:55.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:55.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:55.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:55.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:55.239][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:03:55.241][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:03:55.242][cch$loadFileContent] Trying to load 1 files from cache: [1]: "94c7655c8f372fb2982c15119402bcba".
biodb.TRACE[2022-10-15 08:03:55.242][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:03:55.243][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content".
biodb.DEBUG[2022-10-15 08:03:55.245][private$bdb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:03:55.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:55.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:55.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:55.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:55.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:55.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:55.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:55.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.259][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:55.260][private$selectFields]
biodb.TRACE[2022-10-15 08:03:55.261][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:03:55.261][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:03:55.262][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:55.263][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.263][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.264][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.265][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.265][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.266][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.267][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.268][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.268][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:55.269][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:55.270][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.270][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.271][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.272][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.272][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:03:55.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.282][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2022-10-15 08:03:55.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:55.283][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:55.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:55.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:55.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:55.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:55.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:55.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.296][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:55.296][private$selectFields]
biodb.TRACE[2022-10-15 08:03:55.297][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:03:55.298][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:03:55.298][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:55.299][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.300][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.300][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.301][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.302][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.302][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.303][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.304][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.304][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:55.305][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:55.306][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.307][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.307][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.308][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.309][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:03:55.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.318][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-10-15 08:03:55.319][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:03:55.319][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:03:55.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:55.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:55.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:55.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:55.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:55.327][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:55.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:55.355][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:03:55.357][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:03:55.358][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2022-10-15 08:03:55.359][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:03:55.360][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2022-10-15 08:03:55.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:55.362][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:55.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:55.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:55.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:55.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:55.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:55.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:55.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:55.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:55.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:55.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:55.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:55.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:55.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:55.385][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:55.394][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:03:55.396][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:03:55.397][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2022-10-15 08:03:55.398][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:03:55.399][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2022-10-15 08:03:55.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:55.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:55.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:55.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:55.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:55.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:55.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:55.412][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:55.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:55.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:55.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:55.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:55.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:55.427][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:55.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:55.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:55.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:55.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:55.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:55.441][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:55.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:55.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:55.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:55.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:55.452][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:03:55.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:55.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:55.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:55.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:55.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:55.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:55.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:55.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.466][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:55.467][private$selectFields]
biodb.TRACE[2022-10-15 08:03:55.467][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:03:55.468][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:03:55.469][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:55.469][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.470][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.471][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.471][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.472][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.473][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.474][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.474][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.475][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:55.476][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:55.476][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.477][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.478][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.478][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.479][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:03:55.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.488][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-10-15 08:03:55.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:55.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:55.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:55.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:55.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:55.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:55.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:55.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.502][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:55.503][private$selectFields]
biodb.TRACE[2022-10-15 08:03:55.504][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:03:55.504][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:03:55.505][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:55.506][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.506][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.507][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.508][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.508][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.509][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.510][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.510][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.511][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:55.512][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:55.512][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.513][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.514][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.515][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.515][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:03:55.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.525][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-10-15 08:03:55.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:55.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:55.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:55.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:55.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:55.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:55.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:55.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.538][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:55.539][private$selectFields]
biodb.TRACE[2022-10-15 08:03:55.540][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:03:55.540][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:03:55.541][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:55.542][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.542][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.543][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.544][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.544][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.545][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.546][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.547][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.547][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:55.548][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:55.549][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.549][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.550][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.551][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.551][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:03:55.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:55.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.561][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-10-15 08:03:55.561][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:03:55.562][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:03:55.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:55.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:55.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:55.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:55.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:55.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:55.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:55.598][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:03:55.600][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:03:55.601][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2022-10-15 08:03:55.602][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:03:55.603][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2022-10-15 08:03:55.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:55.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:55.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:55.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:55.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:55.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:55.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:55.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:55.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:55.621][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:55.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:55.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:55.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:55.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:55.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:55.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:55.641][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:03:55.643][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:03:55.644][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dd9d19fb78fcc7453eff2e9dd7ba5702".
biodb.TRACE[2022-10-15 08:03:55.645][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:03:55.646][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.content".
biodb.DEBUG[2022-10-15 08:03:55.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:55.650][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:55.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:55.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:55.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:55.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:55.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:55.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:55.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:55.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:55.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:55.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:55.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:55.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:55.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:55.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:55.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:55.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:55.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:55.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:55.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:55.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:55.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:55.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:55.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:55.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:55.687][private$loadEntries] Creating entries from ids [1]: "3510".
biodb.DEBUG[2022-10-15 08:03:55.688][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:55.689][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3510".
biodb.TRACE[2022-10-15 08:03:55.690][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:55.690][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:55.691][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:55.692][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:55.693][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:55.693][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:55.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:55.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:55.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:55.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:55.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:55.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:55.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:55.703][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.DEBUG[2022-10-15 08:03:55.705][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:55.706][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:55.707][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.TRACE[2022-10-15 08:03:56.183][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510).
biodb.DEBUG[2022-10-15 08:03:56.603][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:56.608][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.content"
biodb.TRACE[2022-10-15 08:03:56.616][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.request"
biodb.TRACE[2022-10-15 08:03:56.623][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3510.xml"
biodb.DEBUG[2022-10-15 08:03:56.626][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:56.636][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:56.637][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:56.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:56.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:56.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:56.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:56.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:56.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:56.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:56.647][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:56.647][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:56.648][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.649][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:56.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:56.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:56.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:56.654][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:56.655][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:56.656][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.656][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:56.657][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:56.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:56.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:56.662][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:56.663][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:56.663][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.664][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:56.665][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:56.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:56.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:56.669][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:56.670][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:56.671][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.672][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:56.672][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:56.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:56.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:56.677][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:56.678][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:56.678][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.679][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:56.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:56.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:56.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:56.684][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:56.685][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:56.686][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.686][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:56.687][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:56.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:56.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:56.692][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:56.693][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:56.693][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.694][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:56.695][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:56.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:56.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:56.699][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:56.700][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:56.701][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.701][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:56.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:56.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:56.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:56.707][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:56.707][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:56.712][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.716][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:56.717][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:56.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:56.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:56.721][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:56.722][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:56.723][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.724][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:56.724][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:56.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:56.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:56.729][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:56.730][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:56.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.731][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:56.732][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:56.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:56.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:56.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:56.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:56.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:56.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:56.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:56.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:56.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:56.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:56.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:56.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:56.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:56.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:56.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:56.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:56.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:56.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:56.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:56.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:56.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:56.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:56.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:56.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:56.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:56.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:56.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:56.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:56.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:56.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:56.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:56.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:56.766][self$createEntryFromContent] Accession numbers: 3510.
biodb.TRACE[2022-10-15 08:03:56.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:56.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:56.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:56.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:56.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:56.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:56.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:56.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:56.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:56.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:56.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:56.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:56.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:56.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:56.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:56.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:56.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:56.783][private$loadEntries] Creating entries from ids [1]: "7554".
biodb.DEBUG[2022-10-15 08:03:56.783][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:56.785][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7554".
biodb.TRACE[2022-10-15 08:03:56.785][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:56.786][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:56.787][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:56.788][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:56.788][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:56.789][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:56.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:56.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:56.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:56.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:56.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:56.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:56.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:56.799][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.DEBUG[2022-10-15 08:03:56.800][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:56.801][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:56.802][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.TRACE[2022-10-15 08:03:57.209][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554).
biodb.DEBUG[2022-10-15 08:03:57.628][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:57.633][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.content"
biodb.TRACE[2022-10-15 08:03:57.641][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.request"
biodb.TRACE[2022-10-15 08:03:57.648][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7554.xml"
biodb.DEBUG[2022-10-15 08:03:57.651][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:57.662][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:57.663][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:57.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:57.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:57.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:57.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:57.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:57.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:57.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:57.672][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:57.673][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:57.674][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.675][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:57.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:57.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.680][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:57.681][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:57.682][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.682][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.683][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:03:57.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:03:57.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.688][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:57.689][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:57.690][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.690][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.691][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:03:57.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:03:57.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.696][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:57.697][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:57.698][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.698][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.699][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:03:57.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:03:57.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.704][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:57.705][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:57.705][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.706][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:03:57.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:03:57.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.712][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:57.712][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:57.713][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.714][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.715][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:57.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:03:57.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.719][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:57.720][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:57.721][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.721][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.722][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:03:57.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:57.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.727][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:57.728][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:57.728][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.729][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:57.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:57.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.742][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:57.742][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:57.743][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.744][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.745][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:03:57.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:03:57.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.750][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:57.750][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:57.751][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.752][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.753][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:03:57.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:03:57.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.757][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:57.758][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:57.759][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.759][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.760][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:03:57.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:03:57.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:57.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:57.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:57.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:57.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:57.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:57.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:57.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:57.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:57.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:57.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:57.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:57.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:57.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:03:57.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:57.795][self$createEntryFromContent] Accession numbers: 7554.
biodb.TRACE[2022-10-15 08:03:57.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:57.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:57.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:57.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:57.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:57.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:03:57.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:57.804][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:03:57.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:57.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:57.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:57.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:57.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:57.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:57.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:57.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.819][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:57.820][private$selectFields]
biodb.TRACE[2022-10-15 08:03:57.820][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:03:57.821][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:03:57.822][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:57.822][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.823][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.824][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.825][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.825][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.826][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.827][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.827][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.828][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:57.829][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:57.829][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.830][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.831][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.832][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.832][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:03:57.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.842][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-10-15 08:03:57.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:57.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:57.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:57.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:57.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:57.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:57.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:57.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.856][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:57.856][private$selectFields]
biodb.TRACE[2022-10-15 08:03:57.857][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:03:57.858][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:03:57.858][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:57.859][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.860][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.861][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.861][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.862][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.863][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.863][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.864][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.865][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:57.865][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:57.866][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.867][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.868][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.868][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.869][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:03:57.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.878][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2022-10-15 08:03:57.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:57.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:57.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:57.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:57.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:57.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:57.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:57.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.892][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:57.893][private$selectFields]
biodb.TRACE[2022-10-15 08:03:57.894][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:03:57.894][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:03:57.895][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:57.896][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.897][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.897][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.898][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.899][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.899][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.900][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.901][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.901][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:57.902][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:57.903][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.903][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.904][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.905][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.905][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:03:57.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:57.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.915][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7554].
biodb.DEBUG[2022-10-15 08:03:57.916][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:03:57.916][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-10-15 08:03:57.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:57.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:57.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:57.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:57.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:57.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:57.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:57.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:57.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:57.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:57.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:57.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:57.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:57.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:57.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:57.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:57.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:57.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:57.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:57.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:57.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:57.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:57.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:57.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:57.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:57.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:57.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:57.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:57.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:57.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:57.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:57.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:57.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:57.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:58.002][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:03:58.004][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:03:58.005][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2022-10-15 08:03:58.005][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:03:58.006][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2022-10-15 08:03:58.009][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:03:58.011][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:03:58.012][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2022-10-15 08:03:58.012][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:03:58.013][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2022-10-15 08:03:58.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:58.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:58.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:58.020][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:58.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:58.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:58.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:58.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:58.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:58.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:58.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:58.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:58.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:58.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:58.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:58.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:58.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:58.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:58.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:58.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:58.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:58.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:58.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:58.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:58.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:58.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:58.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:58.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:58.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:58.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:58.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:58.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:58.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:58.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:58.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:58.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:58.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:58.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:58.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:58.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:58.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:58.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:58.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:58.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:58.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:58.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:58.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:58.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:58.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:58.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:58.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:58.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:58.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:58.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:58.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:58.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:58.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:58.065][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:03:58.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:58.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:58.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:58.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:58.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:58.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:58.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:58.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:58.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:58.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:58.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:58.079][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:58.080][private$selectFields]
biodb.TRACE[2022-10-15 08:03:58.081][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:03:58.081][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:03:58.082][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:58.083][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.083][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.084][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:58.085][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:58.085][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.086][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.087][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:58.087][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:58.088][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:58.089][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:58.090][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.090][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:58.092][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:58.092][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:03:58.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:58.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:58.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:58.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:58.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:58.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:58.102][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-10-15 08:03:58.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:58.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:58.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:58.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:58.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:58.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:58.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:58.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:58.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:58.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:58.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:58.116][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:58.117][private$selectFields]
biodb.TRACE[2022-10-15 08:03:58.117][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:03:58.118][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:03:58.119][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:58.119][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.120][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.121][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:58.121][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:58.122][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.123][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.124][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:58.124][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:58.125][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:58.126][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:58.126][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.127][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.128][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:58.128][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:58.129][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:03:58.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:58.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:58.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:58.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:58.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:58.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:58.138][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-10-15 08:03:58.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:58.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:58.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:58.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:58.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:58.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:58.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:58.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:58.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:58.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:58.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:58.153][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:58.153][private$selectFields]
biodb.TRACE[2022-10-15 08:03:58.154][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:03:58.155][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:03:58.156][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:58.156][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.157][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.158][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:58.159][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:58.159][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.160][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.161][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:58.161][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:58.162][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:58.163][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:03:58.164][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.164][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.165][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:58.166][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:58.166][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:03:58.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:58.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:58.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:58.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:58.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:03:58.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:58.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:58.176][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-10-15 08:03:58.177][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:03:58.177][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:03:58.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:58.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:58.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:58.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:58.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:58.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:58.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:58.218][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:03:58.220][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:58.221][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:58.222][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-10-15 08:03:58.628][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-10-15 08:03:59.047][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:59.052][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f88afce5e7bcb0842d474b04c0bef37a.content"
biodb.TRACE[2022-10-15 08:03:59.060][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f88afce5e7bcb0842d474b04c0bef37a.request"
biodb.DEBUG[2022-10-15 08:03:59.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:59.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:59.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:59.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:59.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:59.070][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:59.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:59.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:59.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:59.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:59.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:59.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:59.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:59.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:59.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:59.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:59.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:59.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:59.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:59.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:59.081][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:59.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:59.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:59.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:59.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:59.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:59.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:59.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:59.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:59.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:59.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:59.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:59.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:59.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:03:59.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:59.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:03:59.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:03:59.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:03:59.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:59.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:59.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:59.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:59.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:59.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:59.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:59.104][private$loadEntries] Creating entries from ids [1]: "27495".
biodb.DEBUG[2022-10-15 08:03:59.104][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:03:59.105][cch$loadFileContent] Trying to load 1 files from cache: [1]: "27495".
biodb.TRACE[2022-10-15 08:03:59.106][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:03:59.107][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:03:59.108][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:03:59.109][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:03:59.109][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:03:59.110][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:03:59.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:59.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:59.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:59.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:59.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:59.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:59.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:03:59.119][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.DEBUG[2022-10-15 08:03:59.121][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:03:59.122][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:03:59.123][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.TRACE[2022-10-15 08:03:59.525][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495).
biodb.DEBUG[2022-10-15 08:03:59.947][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:03:59.953][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.content"
biodb.TRACE[2022-10-15 08:03:59.964][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.request"
biodb.TRACE[2022-10-15 08:03:59.972][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/27495.xml"
biodb.DEBUG[2022-10-15 08:03:59.975][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:03:59.987][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:03:59.988][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:03:59.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:03:59.990][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:03:59.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:03:59.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:03:59.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:03:59.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:03:59.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:03:59.998][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:03:59.999][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:00.000][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.001][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:00.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:00.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.017][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:00.018][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:00.019][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.020][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.021][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:00.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:00.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.026][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:00.027][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:00.028][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.028][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.029][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:00.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:00.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.034][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:00.035][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:00.036][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.036][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.037][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:00.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:00.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.042][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:00.043][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:00.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.044][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:00.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:00.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.050][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:00.051][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:00.052][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.052][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.053][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:00.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:00.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.058][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:00.059][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:00.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.060][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.061][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:00.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:00.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.066][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:00.067][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:00.068][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.068][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:00.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:00.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.074][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:00.075][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:00.075][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.076][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.077][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:00.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:00.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.082][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:00.083][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:00.084][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.084][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.085][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:00.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:00.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.090][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:00.091][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:00.092][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.092][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.093][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:00.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:00.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:00.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:00.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:00.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:00.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:00.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:00.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:00.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:00.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:00.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:00.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:00.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:00.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:00.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:00.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:00.130][self$createEntryFromContent] Accession numbers: 27495.
biodb.TRACE[2022-10-15 08:04:00.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:00.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:00.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:00.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:00.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:00.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:00.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:00.140][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:04:00.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:00.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:00.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:00.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:00.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:00.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:00.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:00.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.155][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:00.156][private$selectFields]
biodb.TRACE[2022-10-15 08:04:00.157][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:00.157][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:00.158][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:00.159][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.159][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.160][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.161][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.161][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.162][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.163][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.164][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.164][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:00.165][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:00.166][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.166][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.167][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.168][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.168][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:00.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.178][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-10-15 08:04:00.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:00.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:00.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:00.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:00.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:00.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:00.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:00.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.192][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:00.193][private$selectFields]
biodb.TRACE[2022-10-15 08:04:00.194][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:00.194][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:00.195][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:00.196][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.197][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.197][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.198][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.199][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.199][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.200][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.201][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.201][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:00.202][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:00.203][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.204][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.204][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.205][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.206][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:00.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.215][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-10-15 08:04:00.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:00.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:00.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:00.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:00.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:00.222][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:00.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:00.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.229][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:00.230][private$selectFields]
biodb.TRACE[2022-10-15 08:04:00.231][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:00.231][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:00.232][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:00.233][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.233][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.234][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.235][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.236][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.236][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.238][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.238][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:00.239][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:00.240][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.241][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.241][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.242][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.243][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:00.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:00.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.257][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [27495].
biodb.DEBUG[2022-10-15 08:04:00.257][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:04:00.258][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:04:00.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:00.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:00.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:00.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:00.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:00.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:00.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:00.293][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:04:00.296][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:04:00.297][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2022-10-15 08:04:00.298][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:04:00.299][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2022-10-15 08:04:00.300][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:00.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:00.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:00.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:00.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:00.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:00.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:00.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:00.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:00.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.311][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:00.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:00.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:00.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:00.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:00.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:00.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:00.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:00.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:00.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:00.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:00.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:00.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:00.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:00.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:00.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:00.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:00.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:00.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:00.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:00.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:00.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:00.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:00.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:00.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:00.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:00.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:00.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:00.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:00.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:00.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:00.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:00.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:00.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:00.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:00.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:00.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:00.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:00.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:00.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:00.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:00.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:00.357][private$loadEntries] Creating entries from ids [1]: "65675".
biodb.DEBUG[2022-10-15 08:04:00.358][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:00.359][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65675".
biodb.TRACE[2022-10-15 08:04:00.360][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:00.361][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:00.362][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:00.363][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:00.363][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:00.364][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:00.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:00.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:00.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:00.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:00.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:00.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:00.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:00.374][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.DEBUG[2022-10-15 08:04:00.376][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:00.377][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:00.378][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.TRACE[2022-10-15 08:04:00.779][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675).
biodb.DEBUG[2022-10-15 08:04:01.199][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:01.204][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.content"
biodb.TRACE[2022-10-15 08:04:01.211][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.request"
biodb.TRACE[2022-10-15 08:04:01.218][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65675.xml"
biodb.DEBUG[2022-10-15 08:04:01.221][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:01.232][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:01.233][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:01.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:01.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:01.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:01.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:01.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:01.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:01.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:01.243][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:01.244][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:01.244][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:01.245][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:01.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:01.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:01.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:01.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:01.251][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:01.252][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:01.252][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:01.253][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:01.254][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:01.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:01.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:01.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:01.259][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:01.259][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:01.260][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:01.261][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:01.268][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:01.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:01.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:01.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:01.273][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:01.274][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:01.275][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:01.275][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:01.276][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:01.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:01.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:01.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:01.281][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:01.282][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:01.282][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:01.283][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:01.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:01.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:01.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:01.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:01.288][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:01.289][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:01.290][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:01.290][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:01.291][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:01.292][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:01.293][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:01.293][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:01.294][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:01.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:01.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:01.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:01.299][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:01.300][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:01.300][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:01.301][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:01.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:01.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:01.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:01.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:01.307][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:01.307][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:01.308][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:01.309][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:01.310][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:01.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:01.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:01.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:01.314][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:01.315][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:01.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:01.316][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:01.317][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:01.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:01.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:01.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:01.322][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:01.323][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:01.323][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:01.324][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:01.325][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:01.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:01.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:01.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:01.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:01.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:01.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:01.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:01.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:01.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:01.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:01.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:01.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:01.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:01.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:01.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:01.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:01.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:01.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:01.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:01.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:01.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:01.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:01.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:01.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:01.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:01.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:01.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:01.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:01.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:01.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:01.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:01.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:01.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:01.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:01.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:01.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:01.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:01.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:01.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:01.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:01.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:01.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:01.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:01.361][self$createEntryFromContent] Accession numbers: 65675.
biodb.TRACE[2022-10-15 08:04:01.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:01.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:01.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:01.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:01.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:01.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:01.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:01.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:01.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:01.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:01.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:01.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:01.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:01.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:01.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:01.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:01.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:01.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:01.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:01.378][private$loadEntries] Creating entries from ids [1]: "66318".
biodb.DEBUG[2022-10-15 08:04:01.379][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:01.380][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66318".
biodb.TRACE[2022-10-15 08:04:01.381][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:01.382][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:01.383][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:01.384][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:01.384][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:01.385][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:01.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:01.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:01.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:01.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:01.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:01.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:01.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:01.395][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.DEBUG[2022-10-15 08:04:01.397][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:01.398][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:01.399][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.TRACE[2022-10-15 08:04:01.800][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318).
biodb.DEBUG[2022-10-15 08:04:03.730][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:03.735][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.content"
biodb.TRACE[2022-10-15 08:04:03.743][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.request"
biodb.TRACE[2022-10-15 08:04:03.750][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66318.xml"
biodb.DEBUG[2022-10-15 08:04:03.752][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:03.763][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:03.764][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:03.765][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:03.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:03.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:03.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:03.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:03.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:03.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:03.774][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:03.775][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:03.775][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:03.776][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:03.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:03.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:03.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:03.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:03.782][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:03.782][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:03.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:03.784][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:03.784][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:03.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:03.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:03.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:03.789][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:03.790][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:03.791][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:03.798][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:03.799][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:03.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:03.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:03.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:03.804][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:03.804][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:03.805][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:03.806][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:03.806][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:03.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:03.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:03.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:03.811][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:03.812][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:03.812][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:03.813][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:03.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:03.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:03.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:03.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:03.818][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:03.819][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:03.820][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:03.820][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:03.821][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:03.822][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:03.822][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:03.823][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:03.824][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:03.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:03.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:03.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:03.828][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:03.829][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:03.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:03.831][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:03.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:03.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:03.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:03.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:03.836][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:03.837][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:03.837][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:03.838][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:03.839][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:03.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:03.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:03.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:03.843][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:03.844][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:03.845][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:03.845][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:03.846][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:03.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:03.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:03.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:03.851][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:03.851][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:03.852][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:03.853][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:03.854][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:03.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:03.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:03.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:03.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:03.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:03.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:03.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:03.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:03.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:03.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:03.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:03.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:03.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:03.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:03.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:03.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:03.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:03.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:03.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:03.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:03.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:03.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:03.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:03.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:03.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:03.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:03.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:03.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:03.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:03.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:03.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:03.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:03.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:03.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:03.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:03.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:03.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:03.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:03.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:03.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:03.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:03.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:03.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:03.888][self$createEntryFromContent] Accession numbers: 66318.
biodb.TRACE[2022-10-15 08:04:03.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:03.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:03.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:03.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:03.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:03.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:03.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:03.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:03.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:03.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:03.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:03.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:03.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:03.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:03.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:03.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:03.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:03.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:03.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:03.906][private$loadEntries] Creating entries from ids [1]: "67547".
biodb.DEBUG[2022-10-15 08:04:03.907][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:03.908][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67547".
biodb.TRACE[2022-10-15 08:04:03.909][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:03.909][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:03.910][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:03.911][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:03.912][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:03.912][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:03.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:03.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:03.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:03.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:03.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:03.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:03.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:03.922][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.DEBUG[2022-10-15 08:04:03.924][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:03.925][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:03.926][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.TRACE[2022-10-15 08:04:04.383][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547).
biodb.DEBUG[2022-10-15 08:04:04.895][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:04.900][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.content"
biodb.TRACE[2022-10-15 08:04:04.908][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.request"
biodb.TRACE[2022-10-15 08:04:04.915][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67547.xml"
biodb.DEBUG[2022-10-15 08:04:04.918][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:04.928][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:04.929][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:04.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:04.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:04.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:04.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:04.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:04.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:04.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:04.940][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:04.940][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:04.941][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:04.942][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:04.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:04.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:04.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:04.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:04.948][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:04.948][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:04.949][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:04.950][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:04.951][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:04.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:04.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:04.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:04.955][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:04.956][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:04.964][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:04.964][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:04.965][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:04.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:04.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:04.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:04.970][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:04.971][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:04.971][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:04.972][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:04.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:04.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:04.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:04.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:04.978][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:04.978][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:04.979][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:04.980][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:04.981][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:04.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:04.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:04.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:04.985][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:04.986][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:04.987][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:04.987][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:04.988][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:04.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:04.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:04.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:04.993][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:04.993][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:04.994][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:04.995][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:04.996][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:04.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:04.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:04.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:05.000][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:05.001][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:05.002][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:05.002][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:05.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:05.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:05.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:05.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:05.008][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:05.009][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:05.009][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:05.010][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:05.011][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:05.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:05.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:05.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:05.016][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:05.016][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:05.017][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:05.018][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:05.019][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:05.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:05.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:05.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:05.023][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:05.024][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:05.025][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:05.025][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:05.026][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:05.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:05.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:05.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:05.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:05.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:05.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:05.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:05.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:05.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:05.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:05.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:05.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:05.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:05.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:05.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:05.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:05.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:05.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:05.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:05.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:05.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:05.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:05.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:05.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:05.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:05.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:05.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:05.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:05.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:05.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:05.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:05.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:05.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:05.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:05.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:05.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:05.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:05.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:05.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:05.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:05.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:05.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:05.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:05.062][self$createEntryFromContent] Accession numbers: 67547.
biodb.TRACE[2022-10-15 08:04:05.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:05.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:05.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:05.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:05.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:05.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:05.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:05.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:05.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:05.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:05.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:05.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:05.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:05.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:05.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:05.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:05.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:05.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:05.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:05.085][private$loadEntries] Creating entries from ids [1]: "69550".
biodb.DEBUG[2022-10-15 08:04:05.086][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:05.088][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69550".
biodb.TRACE[2022-10-15 08:04:05.089][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:05.090][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:05.091][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:05.092][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:05.093][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:05.094][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:05.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:05.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:05.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:05.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:05.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:05.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:05.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:05.105][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.DEBUG[2022-10-15 08:04:05.107][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:05.108][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:05.109][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.TRACE[2022-10-15 08:04:05.514][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550).
biodb.DEBUG[2022-10-15 08:04:05.936][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:05.942][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.content"
biodb.TRACE[2022-10-15 08:04:05.949][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.request"
biodb.TRACE[2022-10-15 08:04:05.957][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69550.xml"
biodb.DEBUG[2022-10-15 08:04:05.960][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:05.970][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:05.971][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:05.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:05.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:05.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:05.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:05.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:05.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:05.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:05.981][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:05.982][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:05.983][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:05.983][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:05.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:05.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:05.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:05.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:05.989][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:05.990][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:05.991][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:05.992][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:05.999][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:06.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:06.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:06.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:06.005][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:06.006][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:06.006][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:06.007][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:06.008][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:06.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:06.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:06.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:06.013][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:06.014][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:06.014][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:06.015][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:06.016][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:06.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:06.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:06.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:06.021][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:06.021][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:06.022][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:06.023][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:06.024][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:06.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:06.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:06.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:06.028][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:06.029][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:06.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:06.031][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:06.031][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:06.032][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:06.033][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:06.034][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:06.035][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:06.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:06.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:06.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:06.039][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:06.040][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:06.041][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:06.041][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:06.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:06.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:06.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:06.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:06.047][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:06.048][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:06.049][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:06.049][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:06.050][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:06.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:06.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:06.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:06.055][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:06.056][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:06.057][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:06.057][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:06.058][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:06.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:06.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:06.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:06.063][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:06.064][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:06.064][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:06.065][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:06.066][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:06.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:06.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:06.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:06.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:06.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:06.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:06.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:06.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:06.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:06.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:06.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:06.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:06.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:06.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:06.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:06.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:06.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:06.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:06.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:06.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:06.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:06.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:06.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:06.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:06.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:06.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:06.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:06.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:06.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:06.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:06.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:06.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:06.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:06.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:06.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:06.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:06.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:06.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:06.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:06.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:06.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:06.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:06.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:06.104][self$createEntryFromContent] Accession numbers: 69550.
biodb.TRACE[2022-10-15 08:04:06.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:06.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:06.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:06.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:06.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:06.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:06.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:06.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:06.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:06.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:06.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:06.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:06.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:06.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:06.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:06.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:06.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:06.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:06.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:06.122][private$loadEntries] Creating entries from ids [1]: "71520".
biodb.DEBUG[2022-10-15 08:04:06.123][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:06.124][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71520".
biodb.TRACE[2022-10-15 08:04:06.125][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:06.125][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:06.126][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:06.127][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:06.128][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:06.129][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:06.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:06.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:06.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:06.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:06.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:06.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:06.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:06.139][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.DEBUG[2022-10-15 08:04:06.141][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:06.142][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:06.143][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.TRACE[2022-10-15 08:04:06.549][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520).
biodb.DEBUG[2022-10-15 08:04:06.976][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:06.982][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.content"
biodb.TRACE[2022-10-15 08:04:06.989][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.request"
biodb.TRACE[2022-10-15 08:04:06.997][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71520.xml"
biodb.DEBUG[2022-10-15 08:04:07.000][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:07.011][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:07.011][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:07.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:07.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:07.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:07.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:07.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:07.019][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:07.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:07.022][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:07.022][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:07.023][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:07.024][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:07.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:07.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:07.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:07.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:07.030][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:07.031][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:07.036][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:07.039][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:07.040][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:07.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:07.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:07.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:07.045][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:07.046][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:07.047][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:07.047][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:07.048][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:07.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:07.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:07.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:07.053][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:07.054][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:07.055][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:07.055][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:07.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:07.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:07.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:07.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:07.061][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:07.062][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:07.062][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:07.063][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:07.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:07.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:07.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:07.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:07.069][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:07.070][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:07.070][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:07.071][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:07.072][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:07.073][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:07.073][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:07.074][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:07.075][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:07.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:07.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:07.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:07.080][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:07.080][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:07.081][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:07.082][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:07.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:07.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:07.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:07.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:07.087][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:07.088][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:07.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:07.090][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:07.091][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:07.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:07.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:07.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:07.096][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:07.096][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:07.097][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:07.098][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:07.098][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:07.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:07.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:07.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:07.103][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:07.104][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:07.105][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:07.106][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:07.106][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:07.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:07.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:07.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:07.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:07.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:07.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:07.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:07.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:07.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:07.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:07.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:07.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:07.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:07.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:07.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:07.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:07.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:07.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:07.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:07.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:07.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:07.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:07.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:07.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:07.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:07.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:07.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:07.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:07.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:07.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:07.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:07.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:07.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:07.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:07.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:07.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:07.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:07.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:07.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:07.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:07.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:07.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:07.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:07.144][self$createEntryFromContent] Accession numbers: 71520.
biodb.TRACE[2022-10-15 08:04:07.145][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:07.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:07.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:07.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:07.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:07.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:07.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:07.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:07.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:07.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:07.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:07.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:07.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:07.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:07.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:07.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:07.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:07.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:07.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:07.162][private$loadEntries] Creating entries from ids [1]: "77600".
biodb.DEBUG[2022-10-15 08:04:07.163][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:07.164][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77600".
biodb.TRACE[2022-10-15 08:04:07.165][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:07.166][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:07.167][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:07.167][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:07.168][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:07.169][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:07.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:07.171][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:07.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:07.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:07.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:07.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:07.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:07.179][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.DEBUG[2022-10-15 08:04:07.181][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:07.182][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:07.183][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.TRACE[2022-10-15 08:04:07.592][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600).
biodb.DEBUG[2022-10-15 08:04:08.012][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:08.017][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.content"
biodb.TRACE[2022-10-15 08:04:08.025][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.request"
biodb.TRACE[2022-10-15 08:04:08.032][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77600.xml"
biodb.DEBUG[2022-10-15 08:04:08.035][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:08.046][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:08.047][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:08.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:08.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:08.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:08.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:08.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:08.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:08.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:08.057][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:08.057][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:08.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:08.059][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:08.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:08.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:08.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:08.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:08.071][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:08.075][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:08.076][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:08.077][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:08.078][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:08.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:08.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:08.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:08.083][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:08.084][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:08.084][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:08.085][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:08.086][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:08.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:08.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:08.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:08.090][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:08.091][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:08.092][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:08.093][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:08.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:08.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:08.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:08.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:08.098][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:08.099][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:08.099][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:08.100][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:08.101][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:08.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:08.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:08.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:08.106][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:08.106][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:08.107][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:08.108][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:08.109][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:08.109][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:08.110][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:08.111][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:08.112][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:08.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:08.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:08.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:08.116][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:08.117][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:08.118][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:08.118][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:08.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:08.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:08.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:08.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:08.124][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:08.124][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:08.125][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:08.126][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:08.127][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:08.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:08.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:08.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:08.131][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:08.132][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:08.133][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:08.133][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:08.134][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:08.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:08.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:08.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:08.139][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:08.140][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:08.140][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:08.141][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:08.142][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:08.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:08.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:08.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:08.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:08.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:08.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:08.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:08.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:08.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:08.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:08.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:08.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:08.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:08.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:08.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:08.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:08.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:08.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:08.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:08.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:08.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:08.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:08.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:08.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:08.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:08.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:08.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:08.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:08.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:08.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:08.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:08.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:08.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:08.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:08.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:08.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:08.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:08.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:08.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:08.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:08.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:08.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:08.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:08.178][self$createEntryFromContent] Accession numbers: 77600.
biodb.TRACE[2022-10-15 08:04:08.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:08.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:08.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:08.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:08.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:08.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:08.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:08.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:08.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:08.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:08.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:08.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:08.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:08.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:08.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:08.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:08.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:08.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:08.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:08.195][private$loadEntries] Creating entries from ids [1]: "77601".
biodb.DEBUG[2022-10-15 08:04:08.196][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:08.197][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77601".
biodb.TRACE[2022-10-15 08:04:08.198][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:08.199][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:08.200][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:08.201][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:08.201][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:08.202][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:08.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:08.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:08.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:08.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:08.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:08.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:08.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:08.212][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.DEBUG[2022-10-15 08:04:08.214][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:08.215][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:08.216][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.TRACE[2022-10-15 08:04:08.621][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601).
biodb.DEBUG[2022-10-15 08:04:09.048][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:09.053][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.content"
biodb.TRACE[2022-10-15 08:04:09.061][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.request"
biodb.TRACE[2022-10-15 08:04:09.068][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77601.xml"
biodb.DEBUG[2022-10-15 08:04:09.071][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:09.081][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:09.082][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:09.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:09.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:09.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:09.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:09.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:09.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:09.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:09.093][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:09.094][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:09.094][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.095][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:09.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:09.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.101][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:09.102][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:09.109][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.110][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.111][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:09.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:09.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.116][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:09.117][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:09.118][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.119][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.120][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:09.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:09.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.124][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:09.125][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:09.126][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.126][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:09.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:09.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.132][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:09.133][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:09.133][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.134][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.135][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:09.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:09.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.140][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:09.140][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:09.141][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.142][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.143][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:09.143][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.144][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.145][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.146][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:09.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.150][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:09.151][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:09.152][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.152][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:09.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:09.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.158][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:09.159][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:09.159][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.160][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.161][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:09.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:09.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.166][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:09.166][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:09.167][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.168][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.169][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:09.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:09.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.173][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:09.174][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:09.175][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.175][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.176][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:09.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:09.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:09.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:09.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:09.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:09.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:09.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:09.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:09.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:09.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:09.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:09.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:09.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:09.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:09.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:09.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:09.212][self$createEntryFromContent] Accession numbers: 77601.
biodb.TRACE[2022-10-15 08:04:09.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:09.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:09.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:09.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:09.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:09.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:09.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:09.222][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:04:09.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:09.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:09.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:09.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:09.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:09.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:09.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:09.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.237][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:09.238][private$selectFields]
biodb.TRACE[2022-10-15 08:04:09.239][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:09.239][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:09.240][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:09.241][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.242][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.242][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.243][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.244][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.245][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.245][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.246][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.247][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:09.247][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:09.248][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.249][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.250][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.250][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.251][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:09.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.261][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2022-10-15 08:04:09.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:09.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:09.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:09.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:09.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:09.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:09.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:09.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.276][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:09.276][private$selectFields]
biodb.TRACE[2022-10-15 08:04:09.277][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:09.278][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:09.278][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:09.279][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.280][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.280][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.281][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.282][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.283][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.283][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.284][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.285][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:09.285][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:09.286][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.287][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.288][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.288][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.289][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:09.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.299][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77600].
biodb.DEBUG[2022-10-15 08:04:09.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:09.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:09.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:09.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:09.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:09.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:09.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:09.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.313][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:09.314][private$selectFields]
biodb.TRACE[2022-10-15 08:04:09.315][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:09.315][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:09.316][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:09.317][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.317][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.318][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.319][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.320][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.320][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.321][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.322][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.322][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:09.323][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:09.324][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.325][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.325][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.326][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.327][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:09.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.337][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77601].
biodb.DEBUG[2022-10-15 08:04:09.337][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:04:09.338][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-10-15 08:04:09.349][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:04:09.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:04:09.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.352][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:04:09.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:04:09.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.355][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:04:09.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:04:09.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-10-15 08:04:09.358][biodb::testThat]
biodb.INFO [2022-10-15 08:04:09.359][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2022-10-15 08:04:09.360][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:04:09.360][biodb::testThat]
biodb.TRACE[2022-10-15 08:04:09.363][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:04:09.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:04:09.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.366][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:04:09.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:04:09.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.368][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:04:09.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:04:09.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.389][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:09.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:09.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:09.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:09.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:09.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:09.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:09.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:09.449][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:04:09.451][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:04:09.452][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2022-10-15 08:04:09.453][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:04:09.454][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2022-10-15 08:04:09.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:09.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:09.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:09.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:09.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:09.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:09.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:09.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:09.474][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:04:09.476][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:04:09.477][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2022-10-15 08:04:09.478][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:04:09.479][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2022-10-15 08:04:09.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:09.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:09.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:09.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:09.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:09.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:09.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:09.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:09.498][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:04:09.500][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:04:09.501][cch$loadFileContent] Trying to load 1 files from cache: [1]: "94c7655c8f372fb2982c15119402bcba".
biodb.TRACE[2022-10-15 08:04:09.502][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:04:09.503][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content".
biodb.DEBUG[2022-10-15 08:04:09.505][private$bdb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:04:09.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:09.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:09.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:09.511][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:09.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:09.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:09.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:09.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.520][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:09.521][private$selectFields]
biodb.TRACE[2022-10-15 08:04:09.522][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:09.522][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:09.523][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:09.524][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.525][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.525][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.526][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.527][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.527][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.528][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.529][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.530][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:09.530][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:09.531][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.532][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.532][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.533][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.534][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:09.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.544][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2022-10-15 08:04:09.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:09.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:09.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:09.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:09.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:09.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:09.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:09.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.558][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:09.559][private$selectFields]
biodb.TRACE[2022-10-15 08:04:09.560][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:09.560][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:09.561][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:09.562][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.563][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.563][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.564][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.565][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.565][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.566][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.567][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.568][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:09.568][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:09.569][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.570][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.570][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.571][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.572][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:09.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.587][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-10-15 08:04:09.587][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:04:09.588][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:04:09.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:09.590][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:09.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:09.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:09.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:09.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:09.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:09.625][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:04:09.627][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:04:09.628][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2022-10-15 08:04:09.629][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:04:09.630][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2022-10-15 08:04:09.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:09.632][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:09.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:09.636][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:09.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:09.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:09.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:09.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:09.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:09.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:09.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:09.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:09.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:09.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:09.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:09.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:09.665][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:04:09.667][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:04:09.668][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2022-10-15 08:04:09.669][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:04:09.670][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2022-10-15 08:04:09.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:09.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:09.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:09.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:09.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:09.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:09.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:09.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:09.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:09.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:09.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:09.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:09.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:09.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:09.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:09.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:09.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:09.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:09.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:09.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:09.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:09.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:09.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:09.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:09.722][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:04:09.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:09.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:09.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:09.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:09.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:09.729][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:09.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:09.731][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.737][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:09.737][private$selectFields]
biodb.TRACE[2022-10-15 08:04:09.738][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:09.739][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:09.739][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:09.740][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.741][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.742][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.742][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.743][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.744][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.744][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.745][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.746][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:09.747][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:09.747][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.748][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.749][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.749][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.750][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:09.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.760][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-10-15 08:04:09.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:09.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:09.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:09.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:09.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:09.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:09.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:09.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.774][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:09.775][private$selectFields]
biodb.TRACE[2022-10-15 08:04:09.776][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:09.776][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:09.777][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:09.778][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.779][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.779][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.780][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.781][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.781][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.782][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.783][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.783][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:09.784][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:09.785][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.786][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.786][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.787][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.788][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:09.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.797][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-10-15 08:04:09.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:09.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:09.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:09.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:09.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:09.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:09.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:09.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.817][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:09.818][private$selectFields]
biodb.TRACE[2022-10-15 08:04:09.818][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:09.819][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:09.820][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:09.821][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.821][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.822][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.823][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.823][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.824][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.825][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.825][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.826][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:09.827][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:09.828][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.828][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.829][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.830][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.830][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:09.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:09.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.840][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-10-15 08:04:09.840][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:04:09.841][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:04:09.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:09.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:09.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:09.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:09.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:09.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:09.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:09.878][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:04:09.880][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:04:09.881][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2022-10-15 08:04:09.882][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:04:09.883][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2022-10-15 08:04:09.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:09.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:09.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:09.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:09.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:09.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:09.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:09.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:09.901][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:09.902][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:09.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:09.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:09.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:09.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:09.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:09.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:09.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:09.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:09.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:09.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:09.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:09.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:09.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:09.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:09.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:09.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:09.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:09.939][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:09.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:09.940][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:09.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:09.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:09.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:09.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:09.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:09.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:09.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:09.957][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:09.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:09.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.964][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:09.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:09.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:09.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:09.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:09.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:09.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:09.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:09.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:09.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:09.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:09.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:09.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:09.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:09.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:09.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:09.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:09.997][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:09.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:09.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:10.001][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:04:10.003][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:04:10.004][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2022-10-15 08:04:10.005][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:04:10.006][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2022-10-15 08:04:10.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:10.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:10.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:10.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:10.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:10.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:10.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:10.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:10.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:10.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:10.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:10.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:10.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:10.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:10.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:10.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:10.046][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:04:10.048][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:04:10.049][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dd9d19fb78fcc7453eff2e9dd7ba5702".
biodb.TRACE[2022-10-15 08:04:10.050][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:04:10.051][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.content".
biodb.DEBUG[2022-10-15 08:04:10.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:10.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:10.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:10.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:10.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:10.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:10.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:10.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:10.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:10.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:10.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:10.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:10.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:10.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:10.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:10.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:10.088][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:04:10.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:10.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:10.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:10.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:10.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:10.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:10.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:10.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.102][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.103][private$selectFields]
biodb.TRACE[2022-10-15 08:04:10.103][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:10.104][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:10.105][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.105][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.106][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.107][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.108][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.108][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.109][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.110][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.110][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.111][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.112][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.113][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.113][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.114][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.115][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.115][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:10.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.125][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-10-15 08:04:10.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:10.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:10.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:10.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:10.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:10.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:10.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:10.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.140][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.141][private$selectFields]
biodb.TRACE[2022-10-15 08:04:10.142][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:10.142][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:10.143][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.144][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.144][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.145][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.146][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.147][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.147][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.148][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.149][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.149][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.150][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.151][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.152][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.152][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.153][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.154][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:10.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.164][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2022-10-15 08:04:10.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:10.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:10.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:10.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:10.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:10.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:10.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:10.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.178][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.179][private$selectFields]
biodb.TRACE[2022-10-15 08:04:10.180][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:10.180][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:10.181][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.182][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.183][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.183][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.184][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.185][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.185][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.186][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.187][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.188][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.188][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.189][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.190][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.191][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.192][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.193][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:10.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.206][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2022-10-15 08:04:10.207][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:04:10.208][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-10-15 08:04:10.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:10.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:10.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:10.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:10.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:10.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:10.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:10.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:10.310][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:04:10.313][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:04:10.314][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2022-10-15 08:04:10.315][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:04:10.316][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2022-10-15 08:04:10.318][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:04:10.320][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:04:10.321][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2022-10-15 08:04:10.322][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:04:10.323][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2022-10-15 08:04:10.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:10.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:10.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:10.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:10.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:10.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:10.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:10.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:10.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:10.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:10.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:10.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:10.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:10.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:10.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:10.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:10.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:10.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:10.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:10.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:10.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:10.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:10.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:10.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:10.373][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:04:10.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:10.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:10.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:10.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:10.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:10.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:10.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:10.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.388][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.388][private$selectFields]
biodb.TRACE[2022-10-15 08:04:10.389][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:10.390][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:10.390][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.391][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.392][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.392][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.393][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.394][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.395][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.395][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.396][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.397][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.397][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.398][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.399][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.400][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.400][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.401][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:10.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.410][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-10-15 08:04:10.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:10.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:10.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:10.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:10.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:10.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:10.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:10.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.424][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.425][private$selectFields]
biodb.TRACE[2022-10-15 08:04:10.426][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:10.426][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:10.427][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.428][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.429][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.429][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.430][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.431][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.431][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.432][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.433][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.433][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.434][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.435][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.436][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.436][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.437][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.438][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:10.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.447][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-10-15 08:04:10.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:10.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:10.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:10.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:10.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:10.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:10.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:10.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.461][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.462][private$selectFields]
biodb.TRACE[2022-10-15 08:04:10.462][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:10.463][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:10.464][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.464][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.465][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.466][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.467][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.467][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.468][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.469][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.469][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.470][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.471][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.471][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.472][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.473][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.474][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.474][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:10.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.481][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.484][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-10-15 08:04:10.484][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:04:10.485][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:04:10.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:10.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:10.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:10.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:10.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:10.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:10.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:10.526][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:04:10.528][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:04:10.529][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2022-10-15 08:04:10.530][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:04:10.531][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2022-10-15 08:04:10.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:10.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:10.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:10.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:10.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:10.538][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:10.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:10.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:10.548][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:10.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:10.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:10.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:10.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:10.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:10.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:10.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:10.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:10.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:10.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:10.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:10.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:10.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:10.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:10.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:10.580][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:04:10.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:10.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:10.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:10.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:10.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:10.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:10.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:10.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.594][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.595][private$selectFields]
biodb.TRACE[2022-10-15 08:04:10.596][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:10.596][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:10.597][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.598][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.599][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.599][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.600][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.601][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.601][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.602][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.603][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.604][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.604][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.605][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.606][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.607][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.608][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:10.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.618][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-10-15 08:04:10.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:10.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:10.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:10.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:10.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:10.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:10.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:10.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.632][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.632][private$selectFields]
biodb.TRACE[2022-10-15 08:04:10.633][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:10.634][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:10.634][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.635][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.636][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.636][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.637][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.638][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.639][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.639][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.640][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.641][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.641][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.642][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.643][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.644][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.644][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.645][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:10.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.654][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2022-10-15 08:04:10.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:10.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:10.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:10.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:10.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:10.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:10.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:10.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.668][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.669][private$selectFields]
biodb.TRACE[2022-10-15 08:04:10.670][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:10.670][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:10.671][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.672][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.672][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.673][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.674][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.675][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.675][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.676][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.677][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.677][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.678][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.679][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.680][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.680][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.681][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.682][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:10.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.691][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2022-10-15 08:04:10.692][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:04:10.692][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:04:10.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:10.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:10.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:10.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:10.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:10.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:10.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:10.733][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:04:10.736][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:04:10.737][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2022-10-15 08:04:10.738][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:04:10.739][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2022-10-15 08:04:10.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:10.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:10.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:10.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:10.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:10.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:10.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:10.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:10.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:10.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:10.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:10.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:10.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:10.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:10.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:10.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:10.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:10.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:10.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:10.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:10.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:10.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:10.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:10.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:10.788][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:04:10.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:10.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:10.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:10.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:10.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:10.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:10.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:10.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.802][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.803][private$selectFields]
biodb.TRACE[2022-10-15 08:04:10.803][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:10.804][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:10.805][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.805][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.806][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.807][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.807][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.808][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.809][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.810][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.810][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.811][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.812][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.812][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.813][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.814][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.815][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.815][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:10.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.825][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-10-15 08:04:10.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:10.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:10.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:10.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:10.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:10.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:10.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:10.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.839][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.839][private$selectFields]
biodb.TRACE[2022-10-15 08:04:10.840][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:10.841][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:10.841][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.842][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.843][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.844][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.844][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.845][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.846][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.846][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.847][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.848][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.849][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.849][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.850][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.851][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.851][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.852][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:10.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.861][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2022-10-15 08:04:10.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:10.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:10.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:10.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:10.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:10.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:10.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:10.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.875][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.876][private$selectFields]
biodb.TRACE[2022-10-15 08:04:10.877][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:10.877][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:10.878][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.879][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.880][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.880][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.881][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.882][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.882][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.883][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.884][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.885][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.885][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:10.886][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.887][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.887][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.888][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.889][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:10.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:10.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.898][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2022-10-15 08:04:10.899][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:04:10.900][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-10-15 08:04:10.913][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:04:10.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:04:10.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.916][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:04:10.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:04:10.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.919][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:04:10.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:04:10.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.926][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:10.927][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:10.927][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.928][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.929][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.929][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:10.930][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.931][ef$get] fields variable is a list.
biodb.INFO [2022-10-15 08:04:10.932][biodb::testThat]
biodb.INFO [2022-10-15 08:04:10.933][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2022-10-15 08:04:10.933][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:04:10.934][biodb::testThat]
biodb.TRACE[2022-10-15 08:04:10.936][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:04:10.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:04:10.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.944][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:04:10.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:04:10.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.947][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:04:10.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:04:10.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.973][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:10.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:10.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:10.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:11.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:11.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:11.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:11.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:11.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:11.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:11.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:11.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:11.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:11.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:11.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:11.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:11.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:11.047][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:04:11.049][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:11.050][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:11.052][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-10-15 08:04:11.465][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-10-15 08:04:11.980][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:11.986][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.content"
biodb.TRACE[2022-10-15 08:04:11.995][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.request"
biodb.DEBUG[2022-10-15 08:04:12.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:12.001][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:12.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:12.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:12.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:12.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:12.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:12.009][private$loadEntries] Creating entries from ids [1]: "3014".
biodb.DEBUG[2022-10-15 08:04:12.010][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:12.011][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3014".
biodb.TRACE[2022-10-15 08:04:12.012][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:12.013][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:12.014][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:12.015][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:12.015][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:12.016][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:12.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:12.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:12.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:12.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:12.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:12.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:12.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:12.027][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.DEBUG[2022-10-15 08:04:12.029][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:12.029][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:12.030][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.TRACE[2022-10-15 08:04:12.431][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014).
biodb.DEBUG[2022-10-15 08:04:12.860][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:12.865][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.content"
biodb.TRACE[2022-10-15 08:04:12.873][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.request"
biodb.TRACE[2022-10-15 08:04:12.881][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3014.xml"
biodb.DEBUG[2022-10-15 08:04:12.884][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:12.895][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:12.896][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:12.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:12.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:12.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:12.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:12.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:12.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:12.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:12.915][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:12.916][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:12.917][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:12.917][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:12.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:12.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:12.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:12.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:12.923][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:12.924][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:12.925][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:12.925][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:12.926][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:12.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:12.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:12.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:12.931][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:12.932][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:12.933][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:12.933][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:12.934][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:12.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:12.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:12.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:12.939][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:12.940][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:12.941][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:12.941][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:12.942][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:12.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:12.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:12.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:12.947][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:12.948][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:12.948][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:12.949][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:12.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:12.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:12.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:12.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:12.954][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:12.955][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:12.956][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:12.957][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:12.958][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:12.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:12.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:12.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:12.962][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:12.963][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:12.964][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:12.964][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:12.965][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:12.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:12.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:12.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:12.970][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:12.971][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:12.972][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:12.972][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:12.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:12.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:12.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:12.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:12.978][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:12.979][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:12.979][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:12.980][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:12.981][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:12.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:12.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:12.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:12.986][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:12.986][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:12.987][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:12.988][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:12.989][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:12.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:12.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:12.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:12.994][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:12.994][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:12.995][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:12.996][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:12.997][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:12.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:12.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:12.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:13.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:13.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:13.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:13.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:13.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:13.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:13.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:13.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:13.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:13.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:13.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:13.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:13.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:13.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:13.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:13.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:13.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:13.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:13.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:13.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:13.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:13.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:13.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:13.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:13.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:13.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:13.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:13.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:13.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:13.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:13.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:13.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:13.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:13.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:13.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:13.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:13.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:13.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:13.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:13.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:13.033][self$createEntryFromContent] Accession numbers: 3014.
biodb.TRACE[2022-10-15 08:04:13.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:13.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:13.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:13.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:13.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:13.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:13.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:13.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:13.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:13.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:13.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:13.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:13.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:13.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:13.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:13.048][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:13.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:13.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:13.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:13.051][private$loadEntries] Creating entries from ids [1]: "7567".
biodb.DEBUG[2022-10-15 08:04:13.052][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:13.053][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7567".
biodb.TRACE[2022-10-15 08:04:13.054][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:13.055][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:13.056][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:13.056][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:13.057][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:13.058][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:13.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:13.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:13.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:13.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:13.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:13.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:13.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:13.068][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.DEBUG[2022-10-15 08:04:13.070][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:13.071][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:13.072][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.TRACE[2022-10-15 08:04:13.477][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567).
biodb.DEBUG[2022-10-15 08:04:13.896][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:13.901][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.content"
biodb.TRACE[2022-10-15 08:04:13.909][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.request"
biodb.TRACE[2022-10-15 08:04:13.917][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7567.xml"
biodb.DEBUG[2022-10-15 08:04:13.919][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:13.938][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:13.939][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:13.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:13.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:13.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:13.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:13.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:13.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:13.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:13.950][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:13.951][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:13.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:13.952][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:13.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:13.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:13.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:13.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:13.958][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:13.959][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:13.960][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:13.960][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:13.961][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:13.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:13.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:13.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:13.966][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:13.967][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:13.968][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:13.969][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:13.969][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:13.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:13.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:13.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:13.974][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:13.975][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:13.976][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:13.977][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:13.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:13.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:13.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:13.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:13.982][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:13.983][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:13.984][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:13.984][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:13.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:13.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:13.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:13.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:13.990][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:13.991][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:13.992][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:13.993][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:13.993][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:13.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:13.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:13.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:13.998][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:13.999][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:14.000][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:14.000][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:14.001][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:14.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:14.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:14.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:14.006][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:14.007][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:14.008][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:14.008][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:14.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:14.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:14.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:14.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:14.014][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:14.015][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:14.015][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:14.016][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:14.017][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:14.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:14.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:14.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:14.022][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:14.023][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:14.024][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:14.024][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:14.025][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:14.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:14.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:14.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:14.030][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:14.031][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:14.031][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:14.032][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:14.033][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:14.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:14.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:14.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:14.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:14.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:14.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:14.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:14.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:14.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:14.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:14.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:14.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:14.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:14.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:14.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:14.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:14.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:14.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:14.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:14.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:14.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:14.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:14.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:14.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:14.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:14.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:14.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:14.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:14.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:14.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:14.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:14.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:14.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:14.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:14.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:14.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:14.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:14.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:14.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:14.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:14.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:14.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:14.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:14.069][self$createEntryFromContent] Accession numbers: 7567.
biodb.TRACE[2022-10-15 08:04:14.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:14.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:14.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:14.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:14.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:14.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:14.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:14.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:14.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:14.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:14.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:14.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:14.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:14.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:14.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:14.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:14.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:14.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:14.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:14.087][private$loadEntries] Creating entries from ids [1]: "8021".
biodb.DEBUG[2022-10-15 08:04:14.088][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:14.089][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8021".
biodb.TRACE[2022-10-15 08:04:14.090][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:14.090][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:14.091][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:14.092][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:14.093][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:14.094][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:14.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:14.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:14.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:14.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:14.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:14.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:14.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:14.104][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.DEBUG[2022-10-15 08:04:14.106][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:14.106][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:14.107][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.TRACE[2022-10-15 08:04:14.521][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021).
biodb.DEBUG[2022-10-15 08:04:14.956][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:14.962][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.content"
biodb.TRACE[2022-10-15 08:04:14.970][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.request"
biodb.TRACE[2022-10-15 08:04:14.977][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8021.xml"
biodb.DEBUG[2022-10-15 08:04:14.980][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:14.999][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:15.000][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:15.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:15.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:15.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:15.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:15.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:15.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:15.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:15.010][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:15.011][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:15.012][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:15.012][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:15.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:15.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:15.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:15.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:15.018][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:15.019][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:15.020][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:15.020][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:15.021][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:15.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:15.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:15.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:15.026][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:15.027][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:15.028][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:15.028][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:15.029][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:15.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:15.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:15.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:15.034][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:15.035][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:15.035][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:15.036][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:15.037][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:15.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:15.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:15.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:15.042][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:15.042][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:15.043][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:15.044][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:15.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:15.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:15.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:15.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:15.049][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:15.050][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:15.051][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:15.052][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:15.052][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:15.053][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:15.054][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:15.055][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:15.056][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:15.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:15.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:15.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:15.060][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:15.061][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:15.062][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:15.063][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:15.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:15.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:15.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:15.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:15.068][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:15.069][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:15.070][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:15.070][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:15.072][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:15.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:15.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:15.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:15.076][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:15.077][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:15.078][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:15.079][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:15.080][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:15.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:15.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:15.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:15.084][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:15.085][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:15.086][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:15.087][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:15.088][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:15.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:15.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:15.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:15.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:15.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:15.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:15.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:15.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:15.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:15.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:15.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:15.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:15.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:15.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:15.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:15.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:15.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:15.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:15.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:15.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:15.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:15.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:15.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:15.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:15.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:15.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:15.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:15.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:15.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:15.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:15.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:15.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:15.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:15.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:15.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:15.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:15.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:15.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:15.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:15.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:15.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:15.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:15.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:15.124][self$createEntryFromContent] Accession numbers: 8021.
biodb.TRACE[2022-10-15 08:04:15.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:15.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:15.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:15.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:15.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:15.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:15.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:15.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:15.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:15.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:15.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:15.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:15.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:15.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:15.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:15.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:15.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:15.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:15.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:15.141][private$loadEntries] Creating entries from ids [1]: "30382".
biodb.DEBUG[2022-10-15 08:04:15.142][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:15.143][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30382".
biodb.TRACE[2022-10-15 08:04:15.144][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:15.145][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:15.146][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:15.146][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:15.147][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:15.148][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:15.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:15.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:15.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:15.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:15.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:15.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:15.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:15.158][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.DEBUG[2022-10-15 08:04:15.160][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:15.161][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:15.162][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.TRACE[2022-10-15 08:04:15.573][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382).
biodb.DEBUG[2022-10-15 08:04:16.007][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:16.013][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.content"
biodb.TRACE[2022-10-15 08:04:16.021][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.request"
biodb.TRACE[2022-10-15 08:04:16.028][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30382.xml"
biodb.DEBUG[2022-10-15 08:04:16.031][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:16.050][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:16.051][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:16.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:16.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:16.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:16.057][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:16.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:16.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:16.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:16.061][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:16.062][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:16.062][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.063][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:16.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:16.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.069][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:16.070][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:16.071][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.071][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.072][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:16.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:16.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.077][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:16.078][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:16.079][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.079][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.080][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:16.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:16.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.085][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:16.086][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:16.087][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.088][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:16.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:16.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.094][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:16.094][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:16.095][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.096][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.097][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:16.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:16.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.102][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:16.102][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:16.103][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.104][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.105][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:16.106][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:16.106][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.107][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.108][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:16.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:16.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.113][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:16.114][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:16.115][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.116][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:16.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:16.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.122][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:16.122][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:16.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.124][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.125][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:16.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:16.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.130][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:16.131][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:16.132][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.132][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.133][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:16.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:16.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.138][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:16.139][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:16.140][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.141][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.142][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:16.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:16.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:16.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:16.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:16.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:16.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:16.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:16.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:16.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:16.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:16.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:16.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:16.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:16.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:16.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:16.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:16.180][self$createEntryFromContent] Accession numbers: 30382.
biodb.TRACE[2022-10-15 08:04:16.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:16.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:16.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:16.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:16.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:16.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:16.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:16.191][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:04:16.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:16.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:16.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:16.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:16.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:16.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:16.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:16.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.207][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:16.208][private$selectFields]
biodb.TRACE[2022-10-15 08:04:16.208][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:16.209][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:16.210][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:16.211][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.212][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.212][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.213][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.214][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.215][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.215][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.216][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.217][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:16.218][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:16.218][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.219][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.220][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.221][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.221][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:16.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.232][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2022-10-15 08:04:16.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:16.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:16.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:16.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:16.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:16.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:16.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:16.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.247][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:16.248][private$selectFields]
biodb.TRACE[2022-10-15 08:04:16.249][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:16.249][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:16.250][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:16.251][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.252][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.252][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.253][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.254][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.255][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.255][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.256][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.257][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:16.258][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:16.258][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.259][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.260][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.261][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.261][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:16.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.272][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2022-10-15 08:04:16.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:16.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:16.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:16.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:16.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:16.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:16.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:16.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.293][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:16.293][private$selectFields]
biodb.TRACE[2022-10-15 08:04:16.294][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:16.295][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:16.296][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:16.296][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.297][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.298][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.299][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.299][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.300][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.301][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.302][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.302][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:16.303][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:16.304][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.305][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.305][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.306][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.307][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:16.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:16.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:16.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:16.317][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2022-10-15 08:04:16.318][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:04:16.319][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:04:16.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:16.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:16.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:16.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:16.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:16.327][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:16.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:16.358][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:04:16.360][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:16.361][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:16.363][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-10-15 08:04:16.771][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-10-15 08:04:17.212][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:17.217][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.content"
biodb.TRACE[2022-10-15 08:04:17.226][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.request"
biodb.DEBUG[2022-10-15 08:04:17.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:17.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:17.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:17.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:17.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:17.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:17.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:17.238][private$loadEntries] Creating entries from ids [1]: "9710".
biodb.DEBUG[2022-10-15 08:04:17.238][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:17.240][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9710".
biodb.TRACE[2022-10-15 08:04:17.241][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:17.241][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:17.242][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:17.243][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:17.244][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:17.244][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:17.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:17.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:17.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:17.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:17.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:17.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:17.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:17.254][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.DEBUG[2022-10-15 08:04:17.256][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:17.257][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:17.258][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.TRACE[2022-10-15 08:04:17.667][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710).
biodb.DEBUG[2022-10-15 08:04:18.096][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:18.101][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.content"
biodb.TRACE[2022-10-15 08:04:18.109][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.request"
biodb.TRACE[2022-10-15 08:04:18.116][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9710.xml"
biodb.DEBUG[2022-10-15 08:04:18.119][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:18.130][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:18.131][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:18.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:18.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:18.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:18.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:18.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:18.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:18.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:18.150][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:18.151][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:18.152][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:18.152][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:18.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:18.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:18.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:18.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:18.158][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:18.159][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:18.160][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:18.161][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:18.161][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:18.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:18.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:18.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:18.166][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:18.167][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:18.168][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:18.168][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:18.169][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:18.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:18.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:18.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:18.174][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:18.175][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:18.176][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:18.176][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:18.177][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:18.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:18.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:18.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:18.182][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:18.183][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:18.183][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:18.184][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:18.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:18.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:18.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:18.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:18.190][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:18.190][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:18.191][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:18.192][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:18.193][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:18.193][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:18.194][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:18.195][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:18.196][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:18.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:18.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:18.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:18.200][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:18.201][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:18.202][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:18.203][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:18.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:18.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:18.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:18.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:18.208][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:18.209][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:18.210][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:18.210][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:18.211][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:18.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:18.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:18.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:18.216][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:18.217][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:18.217][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:18.218][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:18.219][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:18.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:18.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:18.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:18.224][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:18.225][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:18.225][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:18.226][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:18.227][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:18.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:18.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:18.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:18.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:18.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:18.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:18.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:18.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:18.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:18.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:18.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:18.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:18.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:18.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:18.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:18.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:18.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:18.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:18.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:18.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:18.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:18.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:18.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:18.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:18.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:18.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:18.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:18.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:18.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:18.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:18.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:18.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:18.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:18.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:18.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:18.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:18.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:18.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:18.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:18.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:18.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:18.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:18.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:18.263][self$createEntryFromContent] Accession numbers: 9710.
biodb.TRACE[2022-10-15 08:04:18.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:18.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:18.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:18.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:18.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:18.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:18.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:18.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:18.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:18.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:18.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:18.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:18.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:18.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:18.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:18.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:18.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:18.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:18.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:18.281][private$loadEntries] Creating entries from ids [1]: "65530".
biodb.DEBUG[2022-10-15 08:04:18.282][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:18.283][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65530".
biodb.TRACE[2022-10-15 08:04:18.284][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:18.285][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:18.285][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:18.286][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:18.287][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:18.288][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:18.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:18.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:18.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:18.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:18.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:18.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:18.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:18.298][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.DEBUG[2022-10-15 08:04:18.300][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:18.300][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:18.301][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.TRACE[2022-10-15 08:04:18.708][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530).
biodb.DEBUG[2022-10-15 08:04:19.131][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:19.137][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.content"
biodb.TRACE[2022-10-15 08:04:19.144][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.request"
biodb.TRACE[2022-10-15 08:04:19.152][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65530.xml"
biodb.DEBUG[2022-10-15 08:04:19.155][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:19.165][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:19.166][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:19.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:19.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:19.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:19.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:19.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:19.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:19.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:19.185][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:19.185][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:19.186][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:19.187][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:19.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:19.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:19.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:19.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:19.193][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:19.194][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:19.194][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:19.195][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:19.196][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:19.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:19.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:19.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:19.201][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:19.201][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:19.202][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:19.203][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:19.204][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:19.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:19.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:19.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:19.209][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:19.209][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:19.210][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:19.211][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:19.212][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:19.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:19.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:19.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:19.217][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:19.217][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:19.218][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:19.219][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:19.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:19.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:19.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:19.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:19.224][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:19.225][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:19.226][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:19.227][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:19.227][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:19.228][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:19.229][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:19.230][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:19.230][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:19.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:19.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:19.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:19.235][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:19.236][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:19.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:19.237][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:19.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:19.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:19.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:19.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:19.243][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:19.244][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:19.245][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:19.245][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:19.246][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:19.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:19.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:19.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:19.251][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:19.252][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:19.253][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:19.254][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:19.254][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:19.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:19.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:19.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:19.259][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:19.260][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:19.261][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:19.262][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:19.263][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:19.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:19.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:19.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:19.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:19.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:19.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:19.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:19.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:19.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:19.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:19.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:19.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:19.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:19.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:19.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:19.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:19.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:19.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:19.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:19.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:19.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:19.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:19.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:19.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:19.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:19.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:19.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:19.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:19.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:19.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:19.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:19.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:19.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:19.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:19.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:19.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:19.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:19.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:19.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:19.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:19.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:19.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:19.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:19.299][self$createEntryFromContent] Accession numbers: 65530.
biodb.TRACE[2022-10-15 08:04:19.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:19.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:19.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:19.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:19.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:19.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:19.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:19.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:19.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:19.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:19.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:19.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:19.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:19.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:19.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:19.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:19.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:19.316][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:19.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:19.317][private$loadEntries] Creating entries from ids [1]: "72338".
biodb.DEBUG[2022-10-15 08:04:19.318][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:19.319][cch$loadFileContent] Trying to load 1 files from cache: [1]: "72338".
biodb.TRACE[2022-10-15 08:04:19.320][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:19.321][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:19.322][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:19.322][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:19.323][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:19.324][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:19.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:19.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:19.327][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:19.331][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:19.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:19.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:19.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:19.334][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.DEBUG[2022-10-15 08:04:19.336][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:19.337][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:19.338][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.TRACE[2022-10-15 08:04:19.757][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338).
biodb.DEBUG[2022-10-15 08:04:20.181][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:20.186][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.content"
biodb.TRACE[2022-10-15 08:04:20.193][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.request"
biodb.TRACE[2022-10-15 08:04:20.201][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/72338.xml"
biodb.DEBUG[2022-10-15 08:04:20.204][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:20.222][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:20.223][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:20.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:20.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:20.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:20.229][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:20.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:20.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:20.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:20.233][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:20.234][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:20.234][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:20.235][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:20.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:20.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:20.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:20.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:20.241][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:20.242][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:20.242][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:20.243][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:20.244][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:20.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:20.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:20.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:20.249][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:20.249][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:20.250][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:20.251][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:20.252][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:20.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:20.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:20.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:20.257][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:20.257][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:20.258][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:20.259][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:20.260][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:20.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:20.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:20.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:20.264][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:20.265][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:20.266][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:20.266][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:20.267][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:20.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:20.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:20.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:20.272][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:20.273][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:20.274][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:20.274][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:20.275][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:20.276][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:20.277][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:20.277][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:20.278][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:20.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:20.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:20.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:20.283][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:20.284][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:20.285][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:20.285][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:20.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:20.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:20.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:20.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:20.291][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:20.292][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:20.293][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:20.293][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:20.294][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:20.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:20.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:20.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:20.299][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:20.300][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:20.301][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:20.301][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:20.302][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:20.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:20.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:20.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:20.307][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:20.308][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:20.309][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:20.309][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:20.310][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:20.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:20.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:20.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:20.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:20.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:20.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:20.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:20.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:20.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:20.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:20.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:20.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:20.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:20.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:20.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:20.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:20.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:20.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:20.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:20.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:20.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:20.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:20.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:20.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:20.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:20.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:20.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:20.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:20.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:20.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:20.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:20.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:20.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:20.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:20.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:20.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:20.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:20.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:20.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:20.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:20.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:20.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:20.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:20.346][self$createEntryFromContent] Accession numbers: 72338.
biodb.TRACE[2022-10-15 08:04:20.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:20.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:20.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:20.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:20.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:20.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:20.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:20.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:20.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:20.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:20.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:20.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:20.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:20.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:20.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:20.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:20.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:20.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:20.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:20.364][private$loadEntries] Creating entries from ids [1]: "77926".
biodb.DEBUG[2022-10-15 08:04:20.365][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:20.366][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77926".
biodb.TRACE[2022-10-15 08:04:20.367][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:20.368][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:20.368][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:20.369][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:20.370][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:20.371][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:20.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:20.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:20.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:20.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:20.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:20.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:20.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:20.381][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.DEBUG[2022-10-15 08:04:20.382][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:20.383][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:20.384][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.TRACE[2022-10-15 08:04:20.791][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926).
biodb.DEBUG[2022-10-15 08:04:21.215][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:21.221][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.content"
biodb.TRACE[2022-10-15 08:04:21.229][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.request"
biodb.TRACE[2022-10-15 08:04:21.236][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77926.xml"
biodb.DEBUG[2022-10-15 08:04:21.239][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:21.258][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:21.259][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:21.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:21.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:21.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:21.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:21.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:21.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:21.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:21.269][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:21.270][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:21.271][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:21.271][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:21.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:21.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:21.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:21.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:21.277][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:21.278][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:21.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:21.280][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:21.280][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:21.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:21.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:21.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:21.285][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:21.286][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:21.287][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:21.288][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:21.289][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:21.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:21.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:21.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:21.293][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:21.294][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:21.295][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:21.295][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:21.296][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:21.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:21.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:21.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:21.301][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:21.302][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:21.303][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:21.303][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:21.304][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:21.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:21.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:21.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:21.309][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:21.310][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:21.310][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:21.311][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:21.312][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:21.313][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:21.313][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:21.314][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:21.315][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:21.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:21.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:21.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:21.319][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:21.320][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:21.321][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:21.322][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:21.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:21.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:21.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:21.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:21.327][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:21.328][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:21.329][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:21.329][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:21.330][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:21.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:21.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:21.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:21.335][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:21.336][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:21.337][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:21.337][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:21.338][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:21.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:21.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:21.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:21.343][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:21.344][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:21.344][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:21.345][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:21.346][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:21.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:21.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:21.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:21.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:21.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:21.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:21.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:21.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:21.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:21.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:21.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:21.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:21.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:21.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:21.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:21.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:21.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:21.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:21.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:21.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:21.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:21.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:21.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:21.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:21.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:21.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:21.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:21.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:21.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:21.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:21.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:21.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:21.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:21.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:21.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:21.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:21.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:21.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:21.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:21.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:21.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:21.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:21.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:21.382][self$createEntryFromContent] Accession numbers: 77926.
biodb.TRACE[2022-10-15 08:04:21.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:21.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:21.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:21.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:21.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:21.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:21.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:21.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:21.389][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:21.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:21.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:21.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:21.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:21.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:21.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:21.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:21.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:21.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:21.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:21.400][private$loadEntries] Creating entries from ids [1]: "82369".
biodb.DEBUG[2022-10-15 08:04:21.400][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:21.401][cch$loadFileContent] Trying to load 1 files from cache: [1]: "82369".
biodb.TRACE[2022-10-15 08:04:21.402][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:21.403][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:21.404][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:21.405][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:21.405][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:21.406][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:21.408][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:21.409][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:21.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:21.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:21.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:21.415][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:21.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:21.416][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.DEBUG[2022-10-15 08:04:21.418][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:21.419][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:21.420][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.TRACE[2022-10-15 08:04:21.823][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369).
biodb.DEBUG[2022-10-15 08:04:22.243][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:22.248][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.content"
biodb.TRACE[2022-10-15 08:04:22.256][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.request"
biodb.TRACE[2022-10-15 08:04:22.263][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/82369.xml"
biodb.DEBUG[2022-10-15 08:04:22.266][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:22.285][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:22.286][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:22.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:22.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:22.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:22.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:22.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:22.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:22.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:22.296][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:22.297][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:22.297][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.298][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:22.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:22.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:22.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:22.304][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:22.305][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:22.305][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.306][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:22.307][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:22.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:22.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:22.312][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:22.313][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:22.314][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.314][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:22.315][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:22.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:22.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:22.320][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:22.321][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:22.322][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.322][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:22.323][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:22.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:22.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:22.328][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:22.329][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:22.330][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.330][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:22.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:22.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:22.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:22.336][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:22.337][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:22.337][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.338][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:22.339][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:22.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:22.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:22.344][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:22.344][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:22.345][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.346][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:22.347][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:22.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:22.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:22.351][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:22.352][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:22.353][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.354][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:22.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:22.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:22.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:22.359][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:22.360][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:22.361][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.361][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:22.362][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:22.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:22.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:22.367][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:22.368][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:22.369][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.369][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:22.370][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:22.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:22.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:22.375][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:22.376][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:22.376][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.377][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:22.378][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:22.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:22.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:22.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:22.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:22.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:22.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:22.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:22.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:22.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:22.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:22.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:22.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:22.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:22.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:22.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:22.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:22.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:22.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:22.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:22.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:22.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:22.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:22.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:22.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:22.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:22.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:22.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:22.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:22.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:22.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:22.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:22.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:22.414][self$createEntryFromContent] Accession numbers: 82369.
biodb.TRACE[2022-10-15 08:04:22.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:22.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:22.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:22.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:22.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:22.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:22.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:22.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:22.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:22.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:22.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:22.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:22.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:22.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:22.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:22.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:22.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:22.431][private$loadEntries] Creating entries from ids [1]: "90204".
biodb.DEBUG[2022-10-15 08:04:22.432][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:22.433][cch$loadFileContent] Trying to load 1 files from cache: [1]: "90204".
biodb.TRACE[2022-10-15 08:04:22.434][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:22.435][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:22.436][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:22.437][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:22.437][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:22.438][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:22.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:22.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:22.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:22.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:22.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:22.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:22.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:22.448][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.DEBUG[2022-10-15 08:04:22.450][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:22.451][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:22.452][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.TRACE[2022-10-15 08:04:22.858][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204).
biodb.DEBUG[2022-10-15 08:04:23.276][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:23.281][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.content"
biodb.TRACE[2022-10-15 08:04:23.288][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.request"
biodb.TRACE[2022-10-15 08:04:23.303][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/90204.xml"
biodb.DEBUG[2022-10-15 08:04:23.306][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:23.316][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:23.317][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:23.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:23.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:23.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:23.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:23.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:23.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:23.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:23.327][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:23.328][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:23.329][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:23.329][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:23.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:23.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:23.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:23.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:23.335][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:23.336][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:23.336][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:23.337][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:23.338][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:23.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:23.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:23.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:23.343][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:23.344][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:23.344][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:23.345][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:23.346][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:23.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:23.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:23.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:23.350][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:23.351][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:23.352][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:23.353][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:23.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:23.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:23.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:23.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:23.358][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:23.359][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:23.360][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:23.360][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:23.361][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:23.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:23.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:23.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:23.366][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:23.367][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:23.367][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:23.368][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:23.369][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:23.370][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:23.371][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:23.371][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:23.372][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:23.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:23.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:23.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:23.377][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:23.378][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:23.378][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:23.379][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:23.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:23.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:23.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:23.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:23.384][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:23.385][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:23.386][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:23.387][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:23.388][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:23.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:23.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:23.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:23.392][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:23.393][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:23.394][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:23.394][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:23.395][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:23.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:23.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:23.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:23.400][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:23.400][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:23.401][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:23.402][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:23.403][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:23.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:23.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:23.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:23.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:23.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:23.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:23.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:23.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:23.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:23.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:23.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:23.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:23.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:23.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:23.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:23.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:23.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:23.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:23.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:23.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:23.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:23.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:23.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:23.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:23.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:23.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:23.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:23.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:23.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:23.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:23.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:23.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:23.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:23.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:23.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:23.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:23.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:23.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:23.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:23.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:23.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:23.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:23.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:23.438][self$createEntryFromContent] Accession numbers: 90204.
biodb.TRACE[2022-10-15 08:04:23.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:23.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:23.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:23.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:23.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:23.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:23.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:23.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:23.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:23.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:23.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:23.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:23.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:23.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:23.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:23.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:23.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:23.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:23.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:23.456][private$loadEntries] Creating entries from ids [1]: "132793".
biodb.DEBUG[2022-10-15 08:04:23.457][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:23.458][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132793".
biodb.TRACE[2022-10-15 08:04:23.459][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:23.460][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:23.461][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:23.461][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:23.462][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:23.463][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:23.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:23.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:23.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:23.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:23.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:23.471][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:23.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:23.473][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.DEBUG[2022-10-15 08:04:23.475][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:23.476][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:23.477][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.TRACE[2022-10-15 08:04:23.930][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793).
biodb.DEBUG[2022-10-15 08:04:24.475][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:24.481][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.content"
biodb.TRACE[2022-10-15 08:04:24.489][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.request"
biodb.TRACE[2022-10-15 08:04:24.515][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132793.xml"
biodb.DEBUG[2022-10-15 08:04:24.518][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:24.529][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:24.530][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:24.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:24.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:24.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:24.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:24.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:24.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:24.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:24.540][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:24.541][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:24.541][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.542][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:24.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:24.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.548][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:24.549][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:24.549][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.550][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.551][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:24.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:24.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.556][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:24.556][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:24.557][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.558][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.559][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:24.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:24.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.563][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:24.564][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:24.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.565][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:24.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:24.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.571][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:24.572][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:24.572][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.573][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:24.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:24.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.579][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:24.580][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:24.580][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.581][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.582][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:24.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:24.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.587][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:24.587][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:24.588][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.589][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.590][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:24.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:24.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.595][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:24.595][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:24.596][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.597][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:24.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:24.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.602][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:24.603][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:24.604][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.605][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.606][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:24.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:24.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.610][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:24.611][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:24.612][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.613][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.614][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:24.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:24.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.618][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:24.619][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:24.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.621][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.622][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:24.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:24.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:24.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:24.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:24.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:24.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:24.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:24.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:24.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:24.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:24.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:24.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:24.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:24.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:24.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:24.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:24.658][self$createEntryFromContent] Accession numbers: 132793.
biodb.TRACE[2022-10-15 08:04:24.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:24.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:24.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:24.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:24.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:24.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:24.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:24.668][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:04:24.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:24.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:24.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:24.675][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:24.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:24.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:24.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:24.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.684][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:24.684][private$selectFields]
biodb.TRACE[2022-10-15 08:04:24.685][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:24.686][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:24.686][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:24.687][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.688][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.689][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.689][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.690][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.691][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.692][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.692][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.693][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:24.694][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:24.695][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.695][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.696][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.697][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.698][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:24.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.708][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2022-10-15 08:04:24.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:24.709][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:24.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:24.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:24.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:24.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:24.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:24.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.723][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:24.724][private$selectFields]
biodb.TRACE[2022-10-15 08:04:24.724][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:24.725][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:24.726][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:24.726][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.727][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.728][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.729][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.729][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.730][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.731][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.732][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.732][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:24.733][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:24.734][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.735][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.735][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.736][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.737][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:24.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.752][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2022-10-15 08:04:24.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:24.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:24.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:24.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:24.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:24.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:24.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:24.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.768][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:24.768][private$selectFields]
biodb.TRACE[2022-10-15 08:04:24.769][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:24.770][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:24.771][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:24.771][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.772][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.773][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.774][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.774][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.775][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.776][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.777][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.777][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:24.778][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:24.779][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.780][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.780][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.781][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.782][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:24.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:24.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:24.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:24.792][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2022-10-15 08:04:24.792][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:04:24.793][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:04:24.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:24.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:24.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:24.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:24.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:24.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:24.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:24.832][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:04:24.834][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:24.835][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:24.836][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-10-15 08:04:25.252][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-10-15 08:04:25.675][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:25.681][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.content"
biodb.TRACE[2022-10-15 08:04:25.689][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.request"
biodb.DEBUG[2022-10-15 08:04:25.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:25.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:25.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:25.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:25.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:25.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:25.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:25.704][private$loadEntries] Creating entries from ids [1]: "131378".
biodb.DEBUG[2022-10-15 08:04:25.705][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:25.706][cch$loadFileContent] Trying to load 1 files from cache: [1]: "131378".
biodb.TRACE[2022-10-15 08:04:25.707][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:25.708][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:25.709][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:25.710][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:25.711][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:25.711][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:25.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:25.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:25.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:25.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:25.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:25.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:25.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:25.722][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.DEBUG[2022-10-15 08:04:25.724][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:25.725][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:25.726][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.TRACE[2022-10-15 08:04:26.136][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378).
biodb.DEBUG[2022-10-15 08:04:26.568][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:26.573][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.content"
biodb.TRACE[2022-10-15 08:04:26.580][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.request"
biodb.TRACE[2022-10-15 08:04:26.587][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/131378.xml"
biodb.DEBUG[2022-10-15 08:04:26.590][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:26.610][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:26.611][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:26.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:26.612][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:26.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:26.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:26.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:26.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:26.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:26.621][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:26.621][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:26.622][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:26.623][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:26.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:26.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:26.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:26.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:26.628][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:26.629][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:26.630][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:26.630][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:26.631][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:26.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:26.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:26.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:26.636][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:26.637][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:26.637][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:26.638][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:26.639][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:26.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:26.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:26.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:26.644][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:26.644][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:26.645][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:26.646][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:26.647][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:26.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:26.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:26.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:26.651][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:26.652][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:26.653][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:26.653][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:26.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:26.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:26.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:26.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:26.659][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:26.660][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:26.660][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:26.661][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:26.662][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:26.663][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:26.663][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:26.664][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:26.665][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:26.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:26.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:26.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:26.670][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:26.670][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:26.671][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:26.672][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:26.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:26.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:26.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:26.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:26.678][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:26.678][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:26.679][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:26.680][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:26.681][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:26.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:26.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:26.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:26.686][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:26.686][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:26.687][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:26.688][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:26.689][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:26.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:26.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:26.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:26.693][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:26.694][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:26.695][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:26.696][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:26.696][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:26.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:26.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:26.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:26.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:26.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:26.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:26.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:26.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:26.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:26.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:26.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:26.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:26.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:26.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:26.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:26.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:26.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:26.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:26.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:26.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:26.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:26.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:26.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:26.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:26.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:26.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:26.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:26.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:26.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:26.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:26.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:26.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:26.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:26.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:26.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:26.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:26.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:26.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:26.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:26.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:26.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:26.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:26.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:26.732][self$createEntryFromContent] Accession numbers: 131378.
biodb.TRACE[2022-10-15 08:04:26.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:26.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:26.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:26.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:26.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:26.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:26.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:26.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:26.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:26.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:26.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:26.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:26.742][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:04:26.744][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:26.745][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:26.746][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-10-15 08:04:27.162][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-10-15 08:04:27.592][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:27.598][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.content"
biodb.TRACE[2022-10-15 08:04:27.606][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.request"
biodb.DEBUG[2022-10-15 08:04:27.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:27.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:27.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:27.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:27.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:27.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:27.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:27.618][private$loadEntries] Creating entries from ids [1]: "51836".
biodb.DEBUG[2022-10-15 08:04:27.619][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:27.620][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51836".
biodb.TRACE[2022-10-15 08:04:27.621][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:27.622][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:27.623][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:27.623][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:27.624][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:27.625][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:27.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:27.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:27.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:27.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:27.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:27.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:27.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:27.635][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.DEBUG[2022-10-15 08:04:27.637][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:27.638][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:27.639][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.TRACE[2022-10-15 08:04:29.714][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836).
biodb.DEBUG[2022-10-15 08:04:30.140][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:30.145][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.content"
biodb.TRACE[2022-10-15 08:04:30.153][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.request"
biodb.TRACE[2022-10-15 08:04:30.161][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51836.xml"
biodb.DEBUG[2022-10-15 08:04:30.164][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:30.175][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:30.176][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:30.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:30.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:30.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:30.183][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:30.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:30.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:30.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:30.187][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:30.187][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:30.188][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.189][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:30.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:30.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:30.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:30.195][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:30.196][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:30.197][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.197][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:30.198][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:30.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:30.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:30.203][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:30.204][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:30.205][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.206][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:30.207][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:30.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:30.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:30.212][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:30.212][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:30.213][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.214][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:30.215][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:30.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:30.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:30.220][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:30.221][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:30.222][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.222][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:30.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:30.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:30.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:30.228][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:30.229][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:30.230][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.230][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:30.231][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:30.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:30.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:30.236][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:30.237][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:30.238][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.238][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:30.239][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:30.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:30.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:30.244][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:30.245][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:30.246][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.246][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:30.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:30.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:30.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:30.252][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:30.253][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:30.254][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.254][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:30.255][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:30.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:30.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:30.260][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:30.261][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:30.261][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.262][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:30.263][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:30.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:30.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:30.268][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:30.269][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:30.269][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.270][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:30.271][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:30.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:30.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:30.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:30.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:30.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:30.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:30.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:30.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:30.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:30.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:30.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:30.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:30.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:30.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:30.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:30.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:30.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:30.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:30.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:30.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:30.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:30.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:30.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:30.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:30.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:30.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:30.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:30.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:30.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:30.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:30.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:30.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:30.306][self$createEntryFromContent] Accession numbers: 51836.
biodb.TRACE[2022-10-15 08:04:30.307][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:30.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:30.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:30.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:30.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:30.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:30.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:30.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:30.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:30.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:30.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:30.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:30.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:30.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:30.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:30.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:30.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:30.323][private$loadEntries] Creating entries from ids [1]: "51837".
biodb.DEBUG[2022-10-15 08:04:30.324][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:30.325][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51837".
biodb.TRACE[2022-10-15 08:04:30.326][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:30.327][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:30.328][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:30.328][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:30.329][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:30.330][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:30.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:30.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:30.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:30.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:30.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:30.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:30.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:30.340][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.DEBUG[2022-10-15 08:04:30.348][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:30.349][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:30.351][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.TRACE[2022-10-15 08:04:30.762][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837).
biodb.DEBUG[2022-10-15 08:04:31.196][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:31.201][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.content"
biodb.TRACE[2022-10-15 08:04:31.209][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.request"
biodb.TRACE[2022-10-15 08:04:31.216][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51837.xml"
biodb.DEBUG[2022-10-15 08:04:31.219][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:31.229][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:31.230][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:31.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:31.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:31.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:31.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:31.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:31.238][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:31.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:31.241][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:31.242][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:31.242][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.243][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:31.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:31.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:31.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:31.249][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:31.250][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:31.251][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.251][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:31.252][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:31.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:31.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:31.257][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:31.258][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:31.258][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.259][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:31.260][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:31.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:31.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:31.265][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:31.265][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:31.266][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.267][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:31.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:31.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:31.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:31.272][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:31.273][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:31.274][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.275][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:31.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:31.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:31.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:31.280][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:31.281][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:31.282][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.282][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:31.283][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:31.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:31.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:31.288][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:31.289][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:31.289][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.290][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:31.291][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:31.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:31.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:31.296][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:31.296][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:31.297][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.298][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:31.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:31.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:31.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:31.304][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:31.304][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:31.305][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.306][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:31.307][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:31.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:31.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:31.311][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:31.312][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:31.313][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.314][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:31.314][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:31.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:31.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:31.319][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:31.320][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:31.321][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.322][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:31.322][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:31.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:31.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:31.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:31.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:31.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:31.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:31.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:31.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:31.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:31.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:31.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:31.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:31.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:31.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:31.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:31.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:31.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:31.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:31.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:31.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:31.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:31.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:31.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:31.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:31.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:31.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:31.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:31.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:31.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:31.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:31.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:31.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:31.359][self$createEntryFromContent] Accession numbers: 51837.
biodb.TRACE[2022-10-15 08:04:31.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:31.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:31.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:31.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:31.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:31.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:31.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:31.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:31.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:31.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:31.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:31.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:31.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:31.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:31.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:31.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:31.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:31.378][private$loadEntries] Creating entries from ids [1]: "132205".
biodb.DEBUG[2022-10-15 08:04:31.378][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:31.380][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132205".
biodb.TRACE[2022-10-15 08:04:31.381][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:31.381][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:31.382][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:31.383][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:31.384][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:31.384][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:31.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:31.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:31.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:31.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:31.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:31.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:31.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:31.402][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.DEBUG[2022-10-15 08:04:31.404][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:31.405][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:31.406][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.TRACE[2022-10-15 08:04:31.817][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205).
biodb.DEBUG[2022-10-15 08:04:32.244][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:32.250][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.content"
biodb.TRACE[2022-10-15 08:04:32.257][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.request"
biodb.TRACE[2022-10-15 08:04:32.265][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132205.xml"
biodb.DEBUG[2022-10-15 08:04:32.268][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:32.279][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:32.280][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:32.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:32.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:32.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:32.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:32.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:32.288][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:32.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:32.290][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:32.291][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:32.292][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.292][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:32.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:32.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.298][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:32.299][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:32.300][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.301][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.302][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:32.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:32.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.306][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:32.307][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:32.308][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.309][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.310][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:32.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:32.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.315][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:32.315][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:32.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.317][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.318][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:32.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:32.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.322][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:32.323][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:32.324][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.325][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:32.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:32.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.330][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:32.331][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:32.332][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.333][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.333][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:32.334][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.335][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.336][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.337][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:32.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.341][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:32.342][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:32.343][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.344][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:32.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:32.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.349][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:32.350][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:32.351][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.351][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.352][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:32.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:32.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.357][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:32.358][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:32.359][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.359][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.360][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:32.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:32.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.365][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:32.366][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:32.367][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.367][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.368][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:32.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:32.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:32.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:32.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:32.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:32.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:32.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:32.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:32.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:32.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:32.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:32.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:32.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:32.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:32.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:32.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:32.405][self$createEntryFromContent] Accession numbers: 132205.
biodb.TRACE[2022-10-15 08:04:32.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:32.414][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:04:32.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:32.416][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:32.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:32.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:32.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:32.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:32.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:32.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.429][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:32.430][private$selectFields]
biodb.TRACE[2022-10-15 08:04:32.431][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:32.438][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:32.439][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:32.440][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.441][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.442][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.442][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.443][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.444][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.445][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.445][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.446][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:32.447][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:32.448][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.448][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.449][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.450][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.451][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:32.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.460][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2022-10-15 08:04:32.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:32.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:32.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:32.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:32.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:32.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:32.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:32.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.475][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:32.476][private$selectFields]
biodb.TRACE[2022-10-15 08:04:32.476][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:32.477][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:32.478][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:32.478][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.479][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.481][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.481][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.482][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.483][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.484][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.484][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:32.485][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:32.486][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.487][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.487][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.488][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.489][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:32.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.498][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2022-10-15 08:04:32.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:32.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:32.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:32.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:32.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:32.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:32.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:32.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.513][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:32.514][private$selectFields]
biodb.TRACE[2022-10-15 08:04:32.515][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:32.516][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:32.516][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:32.517][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.518][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.519][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.519][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.520][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.521][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.522][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.522][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.523][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:32.524][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:32.525][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.525][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.526][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.527][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.527][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:32.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.537][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2022-10-15 08:04:32.538][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:04:32.539][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:04:32.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:32.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:32.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:32.563][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:32.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:32.565][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:32.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:32.595][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:04:32.597][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:04:32.598][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2022-10-15 08:04:32.599][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:04:32.600][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2022-10-15 08:04:32.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:32.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:32.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:32.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:32.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:32.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:32.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:32.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:32.620][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:04:32.622][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:04:32.623][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2022-10-15 08:04:32.624][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:04:32.625][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2022-10-15 08:04:32.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:32.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:32.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:32.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:32.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:32.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:32.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:32.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.641][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:32.644][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:04:32.646][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:04:32.647][cch$loadFileContent] Trying to load 1 files from cache: [1]: "94c7655c8f372fb2982c15119402bcba".
biodb.TRACE[2022-10-15 08:04:32.648][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:04:32.649][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content".
biodb.DEBUG[2022-10-15 08:04:32.651][private$bdb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:04:32.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:32.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:32.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:32.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:32.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:32.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:32.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:32.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.666][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:32.666][private$selectFields]
biodb.TRACE[2022-10-15 08:04:32.672][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:32.673][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:32.673][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:32.674][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.675][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.676][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.676][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.677][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.678][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.679][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.679][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.680][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:32.681][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:32.682][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.682][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.683][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.684][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.685][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:32.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.694][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2022-10-15 08:04:32.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:32.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:32.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:32.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:32.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:32.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:32.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:32.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.708][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:32.709][private$selectFields]
biodb.TRACE[2022-10-15 08:04:32.710][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:32.710][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:32.711][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:32.712][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.713][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.713][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.714][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.715][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.715][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.716][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.717][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.718][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:32.718][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:32.719][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.720][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.720][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.721][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.722][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:32.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.732][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-10-15 08:04:32.732][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:04:32.733][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:04:32.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:32.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:32.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:32.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:32.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:32.741][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:32.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:32.771][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:04:32.773][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:04:32.774][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2022-10-15 08:04:32.775][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:04:32.776][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2022-10-15 08:04:32.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:32.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:32.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:32.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:32.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:32.784][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:32.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:32.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:32.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:32.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:32.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:32.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:32.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:32.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:32.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:32.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:32.812][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:04:32.815][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:04:32.816][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2022-10-15 08:04:32.816][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:04:32.817][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2022-10-15 08:04:32.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:32.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:32.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:32.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:32.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:32.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:32.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:32.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:32.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:32.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:32.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:32.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:32.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:32.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:32.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:32.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:32.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:32.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:32.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:32.858][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:32.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:32.859][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:32.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:32.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:32.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:32.869][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:04:32.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:32.871][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:32.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:32.876][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:32.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:32.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:32.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:32.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.884][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:32.885][private$selectFields]
biodb.TRACE[2022-10-15 08:04:32.886][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:32.886][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:32.887][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:32.888][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.889][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.889][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.890][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.891][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.892][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.892][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.893][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.894][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:32.894][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:32.895][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.896][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.897][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.902][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.903][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:32.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.913][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-10-15 08:04:32.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:32.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:32.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:32.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:32.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:32.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:32.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:32.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.927][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:32.928][private$selectFields]
biodb.TRACE[2022-10-15 08:04:32.929][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:32.929][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:32.930][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:32.931][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.932][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.932][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.933][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.934][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.935][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.935][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.936][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.937][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:32.937][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:32.938][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.939][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.940][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.940][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.941][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:32.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.951][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-10-15 08:04:32.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:32.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:32.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:32.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:32.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:32.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:32.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:32.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.965][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:32.966][private$selectFields]
biodb.TRACE[2022-10-15 08:04:32.967][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:32.967][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:32.968][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:32.969][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.970][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.970][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.971][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.972][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.973][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.973][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.974][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.975][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:32.976][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:32.976][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.977][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.978][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.979][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.979][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:32.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:32.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:32.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:32.989][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-10-15 08:04:32.990][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:04:32.991][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:04:32.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:32.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:32.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:32.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:32.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:32.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:32.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:33.030][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:04:33.032][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:04:33.033][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2022-10-15 08:04:33.034][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:04:33.035][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2022-10-15 08:04:33.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:33.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:33.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:33.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:33.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:33.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:33.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:33.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:33.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:33.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:33.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:33.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:33.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:33.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:33.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:33.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:33.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:33.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:33.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:33.075][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:33.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:33.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:33.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:33.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:33.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:33.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:33.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:33.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:33.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:33.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:33.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:33.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:33.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:33.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:33.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:33.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:33.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:33.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:33.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:33.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:33.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:33.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:33.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:33.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:33.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:33.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:33.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:33.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:33.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:33.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:33.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:33.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:33.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:33.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:33.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:33.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:33.159][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:04:33.161][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:04:33.162][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2022-10-15 08:04:33.163][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:04:33.164][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2022-10-15 08:04:33.166][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:33.166][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:33.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:33.171][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:33.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:33.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:33.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:33.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:33.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:33.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:33.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:33.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:33.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:33.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:33.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:33.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:33.200][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:04:33.203][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:04:33.204][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dd9d19fb78fcc7453eff2e9dd7ba5702".
biodb.TRACE[2022-10-15 08:04:33.204][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:04:33.206][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.content".
biodb.DEBUG[2022-10-15 08:04:33.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:33.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:33.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:33.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:33.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:33.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:33.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:33.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:33.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:33.227][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:33.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:33.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:33.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:33.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:33.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:33.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:33.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:33.244][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:04:33.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:33.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:33.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:33.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:33.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:33.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:33.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:33.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.260][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:33.260][private$selectFields]
biodb.TRACE[2022-10-15 08:04:33.261][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:33.262][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:33.263][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:33.263][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.264][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.265][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.266][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.267][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.267][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.268][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.269][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.269][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:33.270][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:33.271][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.272][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.273][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.273][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.274][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:33.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.284][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-10-15 08:04:33.285][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:33.286][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:33.287][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:33.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:33.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:33.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:33.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:33.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.300][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:33.300][private$selectFields]
biodb.TRACE[2022-10-15 08:04:33.301][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:33.302][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:33.303][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:33.303][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.304][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.305][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.306][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.306][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.307][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.308][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.309][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.309][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:33.310][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:33.311][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.312][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.312][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.313][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.314][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:33.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.324][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2022-10-15 08:04:33.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:33.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:33.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:33.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:33.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:33.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:33.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:33.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.338][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:33.339][private$selectFields]
biodb.TRACE[2022-10-15 08:04:33.339][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:33.340][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:33.341][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:33.342][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.342][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.343][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.344][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.345][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.345][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.346][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.347][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.348][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:33.348][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:33.349][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.350][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.351][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.351][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.352][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:33.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:33.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:33.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:33.362][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2022-10-15 08:04:33.363][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:04:33.369][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:04:33.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:33.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:33.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:33.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:33.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:33.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:33.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:33.424][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:04:33.426][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:33.427][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:33.428][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-10-15 08:04:33.909][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-10-15 08:04:34.359][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:34.365][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.content"
biodb.TRACE[2022-10-15 08:04:34.373][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.request"
biodb.DEBUG[2022-10-15 08:04:34.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:34.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:34.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:34.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:34.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:34.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:34.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:34.385][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:34.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:34.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:34.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:34.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:34.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:34.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:34.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:34.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:34.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:34.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:34.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:34.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:34.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:34.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:34.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:34.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:34.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:34.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:34.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:34.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:34.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:34.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:34.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:34.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:34.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:34.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:34.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:34.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:34.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:34.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:34.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:34.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:34.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:34.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:34.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:34.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:34.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:34.419][private$loadEntries] Creating entries from ids [1]: "28243".
biodb.DEBUG[2022-10-15 08:04:34.419][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:34.421][cch$loadFileContent] Trying to load 1 files from cache: [1]: "28243".
biodb.TRACE[2022-10-15 08:04:34.421][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:34.422][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:34.423][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:34.424][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:34.425][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:34.425][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:34.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:34.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:34.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:34.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:34.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:34.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:34.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:34.435][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.DEBUG[2022-10-15 08:04:34.437][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:34.438][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:34.439][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.TRACE[2022-10-15 08:04:34.842][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243).
biodb.DEBUG[2022-10-15 08:04:35.260][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:35.265][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.content"
biodb.TRACE[2022-10-15 08:04:35.273][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.request"
biodb.TRACE[2022-10-15 08:04:35.288][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/28243.xml"
biodb.DEBUG[2022-10-15 08:04:35.291][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:35.302][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:35.303][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:35.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:35.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:35.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:35.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:35.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:35.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:35.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:35.312][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:35.313][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:35.314][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.314][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:35.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:35.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.320][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:35.320][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:35.321][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.322][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.323][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:35.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:35.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.327][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:35.328][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:35.329][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.329][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.330][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:35.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:35.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.335][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:35.335][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:35.336][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.337][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:35.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:35.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.342][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:35.343][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:35.344][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.344][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:35.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:35.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.350][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:35.351][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:35.352][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.352][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.353][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:35.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:35.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.358][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:35.359][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:35.359][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.360][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.361][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:35.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:35.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.366][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:35.367][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:35.367][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.368][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:35.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:35.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.374][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:35.375][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:35.375][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.376][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.377][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:35.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:35.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.382][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:35.383][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:35.383][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.384][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.385][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:35.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:35.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.390][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:35.391][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:35.391][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.392][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.393][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:35.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:35.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:35.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:35.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:35.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:35.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:35.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:35.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:35.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:35.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:35.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:35.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:35.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:35.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:35.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:35.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:35.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:35.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:35.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:35.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:35.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:35.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:35.430][self$createEntryFromContent] Accession numbers: 28243.
biodb.TRACE[2022-10-15 08:04:35.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:35.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:35.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:35.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:35.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:35.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:35.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:35.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:35.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:35.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:35.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:35.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:35.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:35.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:35.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:35.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:35.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:35.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:35.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:35.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:35.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:35.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:35.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:35.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:35.458][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:35.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:35.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:35.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:35.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:35.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:35.465][private$loadEntries] Creating entries from ids [1]: "70786".
biodb.DEBUG[2022-10-15 08:04:35.466][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:35.467][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70786".
biodb.TRACE[2022-10-15 08:04:35.468][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:35.469][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:35.469][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:35.470][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:35.471][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:35.472][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:35.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:35.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:35.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:35.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:35.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:35.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:35.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:35.482][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.DEBUG[2022-10-15 08:04:35.484][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:35.484][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:35.485][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.TRACE[2022-10-15 08:04:35.895][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786).
biodb.DEBUG[2022-10-15 08:04:36.326][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:36.331][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.content"
biodb.TRACE[2022-10-15 08:04:36.339][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.request"
biodb.TRACE[2022-10-15 08:04:36.346][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70786.xml"
biodb.DEBUG[2022-10-15 08:04:36.349][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:36.359][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:36.360][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:36.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:36.362][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:36.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:36.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:36.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:36.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:36.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:36.370][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:36.370][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:36.371][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:36.372][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:36.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:36.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:36.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:36.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:36.377][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:36.378][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:36.379][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:36.380][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:36.381][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:36.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:36.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:36.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:36.385][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:36.386][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:36.387][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:36.388][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:36.389][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:36.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:36.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:36.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:36.393][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:36.394][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:36.395][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:36.396][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:36.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:36.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:36.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:36.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:36.401][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:36.402][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:36.403][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:36.403][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:36.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:36.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:36.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:36.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:36.409][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:36.410][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:36.411][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:36.411][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:36.412][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:36.413][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:36.414][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:36.414][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:36.415][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:36.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:36.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:36.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:36.420][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:36.421][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:36.422][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:36.422][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:36.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:36.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:36.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:36.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:36.428][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:36.429][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:36.429][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:36.430][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:36.431][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:36.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:36.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:36.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:36.436][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:36.437][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:36.437][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:36.438][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:36.439][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:36.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:36.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:36.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:36.444][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:36.444][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:36.445][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:36.446][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:36.447][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:36.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:36.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:36.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:36.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:36.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:36.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:36.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:36.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:36.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:36.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:36.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:36.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:36.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:36.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:36.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:36.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:36.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:36.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:36.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:36.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:36.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:36.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:36.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:36.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:36.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:36.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:36.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:36.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:36.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:36.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:36.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:36.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:36.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:36.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:36.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:36.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:36.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:36.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:36.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:36.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:36.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:36.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:36.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:36.483][self$createEntryFromContent] Accession numbers: 70786.
biodb.TRACE[2022-10-15 08:04:36.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:36.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:36.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:36.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:36.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:36.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:36.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:36.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:36.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:36.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:36.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:36.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:36.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:36.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:36.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:36.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:36.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:36.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:36.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:36.500][private$loadEntries] Creating entries from ids [1]: "78144".
biodb.DEBUG[2022-10-15 08:04:36.501][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:36.502][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78144".
biodb.TRACE[2022-10-15 08:04:36.503][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:36.504][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:36.505][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:36.505][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:36.506][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:36.507][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:36.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:36.509][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:36.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:36.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:36.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:36.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:36.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:36.517][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.DEBUG[2022-10-15 08:04:36.519][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:36.519][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:36.520][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.TRACE[2022-10-15 08:04:36.927][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144).
biodb.DEBUG[2022-10-15 08:04:37.364][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:37.369][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.content"
biodb.TRACE[2022-10-15 08:04:37.376][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.request"
biodb.TRACE[2022-10-15 08:04:37.383][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78144.xml"
biodb.DEBUG[2022-10-15 08:04:37.386][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:37.396][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:37.397][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:37.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:37.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:37.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:37.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:37.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:37.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:37.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:37.406][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:37.407][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:37.408][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.409][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:37.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:37.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.414][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:37.415][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:37.416][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.416][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.417][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:37.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:37.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.422][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:37.423][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:37.424][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.424][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.425][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:37.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:37.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.430][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:37.431][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:37.431][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.432][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.433][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:37.434][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:37.434][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.435][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.436][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:37.437][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:37.437][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.438][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.439][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:37.440][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:37.440][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.441][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.442][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:37.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:37.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.447][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:37.447][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:37.448][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.449][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:37.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:37.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.454][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:37.455][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:37.456][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.457][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.458][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:37.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:37.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.462][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:37.463][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:37.464][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.464][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.465][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:37.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:37.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.470][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:37.471][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:37.471][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.472][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.473][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:37.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:37.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.481][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:37.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:37.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:37.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:37.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:37.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:37.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:37.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:37.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:37.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:37.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:37.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:37.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:37.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:37.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:37.508][self$createEntryFromContent] Accession numbers: 78144.
biodb.TRACE[2022-10-15 08:04:37.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:37.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:37.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:37.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:37.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:37.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:37.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:37.518][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:04:37.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:37.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:37.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:37.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:37.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:37.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:37.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:37.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.533][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:37.533][private$selectFields]
biodb.TRACE[2022-10-15 08:04:37.534][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:37.535][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:37.535][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:37.536][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.537][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.538][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.538][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.539][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.540][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.540][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.541][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.542][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:37.543][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:37.543][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.544][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.545][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.545][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.546][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:37.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.556][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-10-15 08:04:37.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:37.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:37.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:37.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:37.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:37.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:37.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:37.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.570][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:37.571][private$selectFields]
biodb.TRACE[2022-10-15 08:04:37.571][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:37.572][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:37.578][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:37.579][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.580][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.582][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.582][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.583][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.584][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.585][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.585][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:37.586][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:37.587][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.588][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.588][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.589][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.590][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:37.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.599][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2022-10-15 08:04:37.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:37.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:37.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:37.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:37.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:37.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:37.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:37.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.613][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:37.614][private$selectFields]
biodb.TRACE[2022-10-15 08:04:37.614][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:37.615][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:37.616][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:37.616][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.617][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.619][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.619][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.620][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.621][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.621][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.622][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:37.623][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:37.623][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.624][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.625][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.626][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.626][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:37.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:37.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:37.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:37.636][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2022-10-15 08:04:37.636][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:04:37.637][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:04:37.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:37.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:37.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:37.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:37.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:37.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:37.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:37.674][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:04:37.676][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:37.677][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:37.678][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-10-15 08:04:38.091][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-10-15 08:04:38.700][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:38.705][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.content"
biodb.TRACE[2022-10-15 08:04:38.713][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.request"
biodb.DEBUG[2022-10-15 08:04:38.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:38.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:38.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:38.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:38.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:38.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:38.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:38.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:38.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:38.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:38.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:38.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:38.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:38.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:38.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:38.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:38.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:38.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:38.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:38.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:38.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:38.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:38.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:38.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:38.741][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:38.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:38.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:38.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:38.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:38.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:38.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:38.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:38.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:38.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:38.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:38.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:38.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:38.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:38.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:38.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:38.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:38.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:38.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:38.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:38.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:38.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:38.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:38.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:38.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:38.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:38.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:38.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:38.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:38.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:38.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:38.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:38.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:38.768][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:04:38.769][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:38.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:38.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:38.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:38.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:38.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:38.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:38.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:38.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:38.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:38.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:38.783][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:38.783][private$selectFields]
biodb.TRACE[2022-10-15 08:04:38.784][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:38.785][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:38.785][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:38.786][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.791][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.794][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:38.795][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:38.796][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.797][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.798][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:38.798][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:38.799][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:38.800][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:38.800][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.801][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.802][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:38.803][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:38.803][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:38.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:38.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:38.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:38.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:38.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:38.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:38.813][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-10-15 08:04:38.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:38.814][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:38.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:38.818][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:38.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:38.819][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:38.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:38.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:38.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:38.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:38.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:38.826][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:38.827][private$selectFields]
biodb.TRACE[2022-10-15 08:04:38.828][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:38.828][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:38.829][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:38.830][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.830][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.831][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:38.832][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:38.832][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.833][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.834][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:38.834][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:38.835][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:38.836][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:38.836][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.837][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.838][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:38.838][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:38.839][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:38.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:38.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:38.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:38.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:38.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:38.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:38.848][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-10-15 08:04:38.849][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:38.850][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:38.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:38.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:38.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:38.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:38.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:38.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:38.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:38.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:38.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:38.862][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:38.863][private$selectFields]
biodb.TRACE[2022-10-15 08:04:38.864][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:38.865][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:38.865][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:38.866][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.867][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.867][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:38.868][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:38.869][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.870][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.870][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:38.871][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:38.872][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:38.872][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:38.873][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.874][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.874][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:38.875][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:38.876][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:38.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:38.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:38.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:38.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:38.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:38.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:38.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:38.885][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-10-15 08:04:38.886][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:04:38.887][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:04:38.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:38.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:38.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:38.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:38.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:38.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:38.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:38.923][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:04:38.925][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:38.926][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:38.927][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-10-15 08:04:39.357][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-10-15 08:04:39.783][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:39.788][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.content"
biodb.TRACE[2022-10-15 08:04:39.796][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.request"
biodb.DEBUG[2022-10-15 08:04:39.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:39.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:39.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:39.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:39.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:39.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:39.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:39.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:39.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:39.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:39.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:39.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:39.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:39.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:39.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:39.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:39.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:39.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:39.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:39.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:39.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:39.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:39.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:39.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:39.823][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:39.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:39.825][private$loadEntries] Creating entries from ids [1]: "47739".
biodb.DEBUG[2022-10-15 08:04:39.825][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:39.826][cch$loadFileContent] Trying to load 1 files from cache: [1]: "47739".
biodb.TRACE[2022-10-15 08:04:39.827][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:39.828][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:39.829][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:39.830][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:39.830][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:39.831][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:39.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:39.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:39.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:39.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:39.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:39.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:39.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:39.848][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.DEBUG[2022-10-15 08:04:39.849][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:39.850][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:39.851][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.TRACE[2022-10-15 08:04:40.256][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739).
biodb.DEBUG[2022-10-15 08:04:40.683][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:40.688][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.content"
biodb.TRACE[2022-10-15 08:04:40.696][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.request"
biodb.TRACE[2022-10-15 08:04:40.703][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/47739.xml"
biodb.DEBUG[2022-10-15 08:04:40.705][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:40.716][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:40.717][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:40.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:40.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:40.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:40.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:40.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:40.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:40.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:40.727][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:40.728][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:40.729][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:40.729][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:40.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:40.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:40.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:40.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:40.735][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:40.736][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:40.737][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:40.737][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:40.738][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:40.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:40.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:40.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:40.743][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:40.744][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:40.744][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:40.745][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:40.746][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:40.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:40.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:40.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:40.751][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:40.752][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:40.752][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:40.753][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:40.754][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:40.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:40.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:40.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:40.759][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:40.760][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:40.760][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:40.761][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:40.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:40.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:40.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:40.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:40.767][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:40.768][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:40.768][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:40.769][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:40.770][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:40.771][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:40.771][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:40.772][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:40.773][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:40.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:40.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:40.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:40.778][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:40.779][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:40.779][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:40.780][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:40.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:40.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:40.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:40.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:40.786][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:40.786][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:40.787][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:40.788][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:40.789][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:40.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:40.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:40.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:40.794][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:40.794][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:40.795][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:40.796][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:40.797][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:40.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:40.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:40.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:40.801][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:40.802][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:40.803][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:40.803][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:40.804][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:40.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:40.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:40.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:40.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:40.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:40.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:40.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:40.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:40.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:40.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:40.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:40.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:40.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:40.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:40.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:40.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:40.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:40.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:40.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:40.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:40.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:40.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:40.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:40.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:40.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:40.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:40.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:40.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:40.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:40.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:40.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:40.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:40.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:40.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:40.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:40.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:40.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:40.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:40.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:40.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:40.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:40.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:40.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:40.838][self$createEntryFromContent] Accession numbers: 47739.
biodb.TRACE[2022-10-15 08:04:40.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:40.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:40.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:40.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:40.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:40.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:40.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:40.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:40.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:40.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:40.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:40.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:40.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:40.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:40.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:40.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:40.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:40.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:40.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:40.855][private$loadEntries] Creating entries from ids [1]: "51744".
biodb.DEBUG[2022-10-15 08:04:40.856][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:40.857][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51744".
biodb.TRACE[2022-10-15 08:04:40.858][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:40.859][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:40.859][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:40.867][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:40.868][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:40.869][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:40.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:40.871][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:40.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:40.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:40.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:40.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:40.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:40.878][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.DEBUG[2022-10-15 08:04:40.880][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:40.881][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:40.881][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.TRACE[2022-10-15 08:04:41.304][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744).
biodb.DEBUG[2022-10-15 08:04:41.724][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:41.729][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.content"
biodb.TRACE[2022-10-15 08:04:41.736][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.request"
biodb.TRACE[2022-10-15 08:04:41.744][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51744.xml"
biodb.DEBUG[2022-10-15 08:04:41.746][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:41.757][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:41.758][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:41.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:41.760][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:41.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:41.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:41.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:41.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:41.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:41.768][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:41.769][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:41.769][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:41.770][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:41.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:41.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:41.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:41.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:41.776][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:41.776][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:41.777][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:41.778][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:41.779][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:41.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:41.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:41.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:41.784][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:41.784][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:41.785][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:41.786][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:41.786][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:41.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:41.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:41.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:41.791][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:41.792][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:41.793][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:41.793][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:41.794][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:41.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:41.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:41.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:41.799][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:41.799][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:41.800][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:41.801][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:41.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:41.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:41.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:41.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:41.806][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:41.807][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:41.808][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:41.808][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:41.809][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:41.810][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:41.811][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:41.811][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:41.812][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:41.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:41.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:41.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:41.817][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:41.817][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:41.818][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:41.819][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:41.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:41.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:41.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:41.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:41.824][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:41.825][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:41.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:41.826][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:41.827][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:41.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:41.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:41.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:41.832][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:41.833][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:41.833][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:41.834][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:41.835][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:41.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:41.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:41.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:41.839][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:41.840][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:41.841][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:41.842][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:41.842][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:41.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:41.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:41.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:41.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:41.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:41.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:41.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:41.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:41.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:41.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:41.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:41.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:41.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:41.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:41.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:41.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:41.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:41.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:41.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:41.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:41.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:41.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:41.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:41.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:41.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:41.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:41.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:41.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:41.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:41.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:41.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:41.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:41.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:41.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:41.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:41.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:41.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:41.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:41.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:41.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:41.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:41.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:41.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:41.877][self$createEntryFromContent] Accession numbers: 51744.
biodb.TRACE[2022-10-15 08:04:41.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:41.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:41.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:41.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:41.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:41.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:41.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:41.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:41.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:41.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:41.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:41.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:41.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:41.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:41.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:41.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:41.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:41.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:41.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:41.899][private$loadEntries] Creating entries from ids [1]: "64473".
biodb.DEBUG[2022-10-15 08:04:41.902][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:41.904][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64473".
biodb.TRACE[2022-10-15 08:04:41.905][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:41.905][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:41.906][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:41.907][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:41.908][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:41.908][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:41.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:41.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:41.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:41.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:41.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:41.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:41.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:41.918][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.DEBUG[2022-10-15 08:04:41.920][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:41.920][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:41.921][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.TRACE[2022-10-15 08:04:42.373][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473).
biodb.DEBUG[2022-10-15 08:04:42.796][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:42.801][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.content"
biodb.TRACE[2022-10-15 08:04:42.809][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.request"
biodb.TRACE[2022-10-15 08:04:42.816][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64473.xml"
biodb.DEBUG[2022-10-15 08:04:42.819][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:42.830][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:42.831][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:42.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:42.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:42.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:42.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:42.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:42.839][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:42.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:42.841][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:42.842][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:42.843][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.843][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:42.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:42.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:42.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:42.849][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:42.850][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:42.850][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.851][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:42.852][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:42.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:42.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:42.857][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:42.857][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:42.858][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.859][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:42.859][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:42.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:42.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:42.864][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:42.865][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:42.865][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.866][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:42.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:42.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:42.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:42.871][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:42.872][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:42.873][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.873][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:42.874][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:42.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:42.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:42.879][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:42.879][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:42.880][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.881][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:42.882][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:42.882][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:42.883][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.884][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:42.885][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:42.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:42.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:42.889][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:42.890][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:42.891][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.891][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:42.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:42.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:42.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:42.896][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:42.897][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:42.898][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.899][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:42.899][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:42.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:42.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:42.904][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:42.905][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:42.905][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.906][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:42.907][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:42.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:42.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:42.911][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:42.912][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:42.913][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.913][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:42.914][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:42.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:42.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:42.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:42.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:42.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:42.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:42.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:42.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:42.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:42.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:42.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:42.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:42.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:42.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:42.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:42.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:42.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:42.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:42.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:42.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:42.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:42.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:42.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:42.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:42.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:42.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:42.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:42.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:42.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:42.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:42.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:42.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:42.948][self$createEntryFromContent] Accession numbers: 64473.
biodb.TRACE[2022-10-15 08:04:42.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:42.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:42.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:42.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:42.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:42.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:42.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:42.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:42.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:42.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:42.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:42.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:42.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:42.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:42.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:42.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:42.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:42.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:42.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:42.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:42.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:42.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:42.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:42.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:42.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:42.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:42.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:42.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:42.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:42.985][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:42.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:42.987][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:42.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:42.988][private$loadEntries] Creating entries from ids [1]: "75244".
biodb.DEBUG[2022-10-15 08:04:42.989][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:42.990][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75244".
biodb.TRACE[2022-10-15 08:04:42.991][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:42.992][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:42.992][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:42.993][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:42.994][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:42.994][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:42.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:42.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:42.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:43.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:43.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:43.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:43.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:43.004][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.DEBUG[2022-10-15 08:04:43.005][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:43.006][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:43.007][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.TRACE[2022-10-15 08:04:43.428][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244).
biodb.DEBUG[2022-10-15 08:04:44.240][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:44.245][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.content"
biodb.TRACE[2022-10-15 08:04:44.253][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.request"
biodb.TRACE[2022-10-15 08:04:44.260][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75244.xml"
biodb.DEBUG[2022-10-15 08:04:44.263][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:44.274][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:44.275][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:44.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:44.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:44.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:44.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:44.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:44.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:44.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:44.285][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:44.285][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:44.286][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.287][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:44.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:44.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:44.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:44.292][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:44.293][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:44.294][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.295][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:44.296][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:44.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:44.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:44.300][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:44.301][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:44.302][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.303][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:44.304][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:44.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:44.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:44.308][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:44.309][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:44.310][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.310][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:44.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:44.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:44.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:44.316][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:44.317][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:44.317][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.318][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:44.319][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:44.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:44.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:44.324][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:44.325][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:44.325][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.326][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:44.327][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:44.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:44.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:44.332][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:44.332][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:44.333][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.334][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:44.335][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:44.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:44.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:44.339][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:44.340][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:44.341][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.341][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:44.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:44.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:44.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:44.347][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:44.348][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:44.348][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.349][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:44.350][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:44.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:44.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:44.354][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:44.355][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:44.356][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.357][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:44.357][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:44.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:44.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:44.362][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:44.363][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:44.363][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.364][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:44.365][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:44.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:44.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:44.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:44.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:44.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:44.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:44.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:44.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:44.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:44.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:44.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:44.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:44.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:44.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:44.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:44.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:44.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:44.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:44.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:44.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:44.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:44.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:44.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:44.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:44.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:44.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:44.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:44.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:44.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:44.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:44.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:44.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:44.407][self$createEntryFromContent] Accession numbers: 75244.
biodb.TRACE[2022-10-15 08:04:44.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:44.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:44.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:44.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:44.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:44.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:44.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:44.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:44.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:44.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:44.417][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:44.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:44.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:44.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:44.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:44.423][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:44.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:44.424][private$loadEntries] Creating entries from ids [1]: "75311".
biodb.DEBUG[2022-10-15 08:04:44.425][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:44.426][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75311".
biodb.TRACE[2022-10-15 08:04:44.427][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:44.428][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:44.428][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:44.429][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:44.430][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:44.431][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:44.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:44.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:44.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:44.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:44.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:44.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:44.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:44.440][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.DEBUG[2022-10-15 08:04:44.442][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:44.443][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:44.444][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.TRACE[2022-10-15 08:04:44.870][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311).
biodb.DEBUG[2022-10-15 08:04:45.304][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:45.309][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.content"
biodb.TRACE[2022-10-15 08:04:45.316][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.request"
biodb.TRACE[2022-10-15 08:04:45.324][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75311.xml"
biodb.DEBUG[2022-10-15 08:04:45.326][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:45.337][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:45.338][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:45.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:45.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:45.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:45.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:45.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:45.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:45.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:45.348][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:45.349][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:45.350][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.350][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:45.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:45.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:45.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:45.356][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:45.357][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:45.358][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.358][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:45.359][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:45.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:45.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:45.364][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:45.365][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:45.365][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.366][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:45.367][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:45.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:45.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:45.372][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:45.372][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:45.373][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.374][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:45.375][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:45.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:45.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:45.379][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:45.380][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:45.381][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.382][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:45.382][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:45.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:45.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:45.387][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:45.388][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:45.389][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.389][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:45.390][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:45.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:45.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:45.395][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:45.396][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:45.396][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.397][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:45.398][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:45.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:45.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:45.403][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:45.403][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:45.404][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.405][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:45.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:45.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:45.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:45.410][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:45.411][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:45.412][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.413][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:45.413][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:45.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:45.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:45.418][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:45.419][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:45.420][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.420][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:45.421][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:45.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:45.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:45.426][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:45.427][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:45.427][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.428][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:45.429][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:45.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:45.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:45.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:45.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:45.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:45.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:45.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:45.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:45.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:45.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:45.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:45.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:45.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:45.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:45.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:45.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:45.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:45.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:45.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:45.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:45.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:45.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:45.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:45.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:45.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:45.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:45.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:45.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:45.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:45.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:45.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:45.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:45.475][self$createEntryFromContent] Accession numbers: 75311.
biodb.TRACE[2022-10-15 08:04:45.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:45.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:45.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:45.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:45.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:45.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:45.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:45.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:45.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:45.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:45.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:45.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:45.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:45.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:45.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:45.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:45.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:45.492][private$loadEntries] Creating entries from ids [1]: "75350".
biodb.DEBUG[2022-10-15 08:04:45.493][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:45.494][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75350".
biodb.TRACE[2022-10-15 08:04:45.495][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:45.496][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:45.496][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:45.497][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:45.498][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:45.499][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:45.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:45.501][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:45.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:45.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:45.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:45.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:45.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:45.508][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.DEBUG[2022-10-15 08:04:45.510][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:45.511][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:45.512][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.TRACE[2022-10-15 08:04:45.918][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350).
biodb.DEBUG[2022-10-15 08:04:46.345][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:46.352][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.content"
biodb.TRACE[2022-10-15 08:04:46.360][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.request"
biodb.TRACE[2022-10-15 08:04:46.368][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75350.xml"
biodb.DEBUG[2022-10-15 08:04:46.371][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:46.382][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:46.383][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:46.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:46.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:46.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:46.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:46.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:46.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:46.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:46.393][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:46.394][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:46.395][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:46.395][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:46.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:46.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:46.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:46.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:46.401][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:46.402][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:46.403][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:46.404][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:46.405][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:46.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:46.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:46.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:46.409][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:46.410][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:46.411][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:46.412][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:46.413][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:46.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:46.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:46.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:46.418][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:46.418][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:46.419][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:46.420][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:46.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:46.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:46.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:46.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:46.426][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:46.426][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:46.427][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:46.428][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:46.429][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:46.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:46.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:46.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:46.434][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:46.435][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:46.435][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:46.436][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:46.437][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:46.438][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:46.438][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:46.439][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:46.440][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:46.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:46.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:46.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:46.445][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:46.446][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:46.446][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:46.447][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:46.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:46.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:46.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:46.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:46.453][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:46.454][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:46.455][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:46.455][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:46.456][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:46.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:46.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:46.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:46.461][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:46.462][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:46.463][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:46.463][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:46.464][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:46.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:46.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:46.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:46.469][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:46.470][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:46.470][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:46.471][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:46.472][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:46.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:46.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:46.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:46.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:46.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:46.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:46.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:46.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:46.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:46.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:46.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:46.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:46.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:46.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:46.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:46.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:46.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:46.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:46.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:46.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:46.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:46.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:46.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:46.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:46.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:46.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:46.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:46.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:46.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:46.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:46.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:46.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:46.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:46.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:46.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:46.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:46.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:46.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:46.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:46.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:46.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:46.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:46.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:46.515][self$createEntryFromContent] Accession numbers: 75350.
biodb.TRACE[2022-10-15 08:04:46.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:46.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:46.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:46.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:46.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:46.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:46.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:46.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:46.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:46.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:46.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:46.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:46.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:46.525][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:46.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:46.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:46.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:46.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:46.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:46.532][private$loadEntries] Creating entries from ids [1]: "87236".
biodb.DEBUG[2022-10-15 08:04:46.533][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:46.534][cch$loadFileContent] Trying to load 1 files from cache: [1]: "87236".
biodb.TRACE[2022-10-15 08:04:46.535][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:46.536][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:46.536][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:46.537][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:46.538][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:46.539][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:46.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:46.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:46.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:46.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:46.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:46.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:46.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:46.548][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.DEBUG[2022-10-15 08:04:46.550][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:46.551][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:46.552][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.TRACE[2022-10-15 08:04:47.731][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236).
biodb.DEBUG[2022-10-15 08:04:48.151][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:48.157][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.content"
biodb.TRACE[2022-10-15 08:04:48.164][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.request"
biodb.TRACE[2022-10-15 08:04:48.171][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/87236.xml"
biodb.DEBUG[2022-10-15 08:04:48.174][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:48.184][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:48.185][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:48.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:48.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:48.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:48.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:48.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:48.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:48.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:48.195][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:48.196][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:48.197][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:48.197][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:48.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:48.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:48.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:48.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:48.203][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:48.204][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:48.204][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:48.205][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:48.206][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:48.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:48.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:48.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:48.211][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:48.212][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:48.212][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:48.213][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:48.214][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:48.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:48.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:48.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:48.218][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:48.219][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:48.220][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:48.220][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:48.221][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:48.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:48.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:48.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:48.226][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:48.227][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:48.227][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:48.228][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:48.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:48.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:48.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:48.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:48.234][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:48.234][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:48.235][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:48.236][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:48.237][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:48.237][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:48.238][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:48.239][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:48.240][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:48.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:48.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:48.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:48.244][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:48.245][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:48.246][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:48.246][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:48.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:48.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:48.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:48.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:48.252][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:48.253][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:48.253][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:48.254][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:48.255][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:48.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:48.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:48.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:48.260][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:48.260][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:48.261][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:48.262][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:48.263][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:48.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:48.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:48.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:48.267][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:48.268][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:48.269][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:48.269][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:48.270][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:48.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:48.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:48.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:48.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:48.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:48.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:48.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:48.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:48.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:48.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:48.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:48.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:48.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:48.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:48.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:48.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:48.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:48.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:48.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:48.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:48.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:48.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:48.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:48.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:48.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:48.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:48.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:48.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:48.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:48.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:48.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:48.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:48.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:48.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:48.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:48.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:48.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:48.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:48.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:48.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:48.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:48.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:48.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:48.313][self$createEntryFromContent] Accession numbers: 87236.
biodb.TRACE[2022-10-15 08:04:48.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:48.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:48.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:48.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:48.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:48.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:48.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:48.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:48.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:48.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:48.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:48.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:48.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:48.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:48.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:48.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:48.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:48.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:48.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:48.330][private$loadEntries] Creating entries from ids [1]: "132193".
biodb.DEBUG[2022-10-15 08:04:48.331][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:48.332][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132193".
biodb.TRACE[2022-10-15 08:04:48.333][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:48.334][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:48.335][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:48.335][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:48.336][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:48.337][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:48.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:48.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:48.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:48.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:48.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:48.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:48.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:48.346][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.DEBUG[2022-10-15 08:04:48.348][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:48.349][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:48.350][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.TRACE[2022-10-15 08:04:48.756][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193).
biodb.DEBUG[2022-10-15 08:04:49.456][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:49.461][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.content"
biodb.TRACE[2022-10-15 08:04:49.469][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.request"
biodb.TRACE[2022-10-15 08:04:49.476][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132193.xml"
biodb.DEBUG[2022-10-15 08:04:49.478][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:49.489][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:49.490][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:49.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:49.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:49.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:49.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:49.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:49.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:49.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:49.500][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:49.501][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:49.501][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:49.502][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:49.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:49.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:49.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:49.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:49.508][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:49.509][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:49.509][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:49.510][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:49.511][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:49.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:49.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:49.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:49.516][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:49.516][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:49.517][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:49.518][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:49.519][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:49.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:49.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:49.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:49.523][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:49.524][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:49.525][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:49.525][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:49.526][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:49.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:49.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:49.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:49.531][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:49.532][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:49.532][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:49.533][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:49.534][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:49.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:49.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:49.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:49.539][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:49.540][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:49.540][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:49.541][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:49.542][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:49.543][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:49.543][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:49.544][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:49.545][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:49.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:49.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:49.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:49.550][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:49.550][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:49.551][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:49.552][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:49.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:49.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:49.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:49.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:49.557][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:49.558][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:49.559][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:49.559][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:49.560][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:49.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:49.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:49.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:49.565][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:49.566][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:49.567][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:49.567][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:49.568][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:49.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:49.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:49.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:49.573][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:49.574][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:49.574][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:49.575][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:49.576][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:49.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:49.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:49.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:49.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:49.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:49.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:49.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:49.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:49.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:49.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:49.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:49.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:49.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:49.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:49.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:49.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:49.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:49.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:49.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:49.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:49.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:49.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:49.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:49.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:49.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:49.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:49.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:49.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:49.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:49.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:49.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:49.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:49.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:49.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:49.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:49.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:49.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:49.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:49.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:49.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:49.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:49.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:49.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:49.618][self$createEntryFromContent] Accession numbers: 132193.
biodb.TRACE[2022-10-15 08:04:49.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:49.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:49.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:49.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:49.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:49.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:49.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:49.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:49.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:49.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:49.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:49.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:49.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:49.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:49.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:49.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:49.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:49.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:49.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:49.634][private$loadEntries] Creating entries from ids [1]: "146002".
biodb.DEBUG[2022-10-15 08:04:49.635][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:49.636][cch$loadFileContent] Trying to load 1 files from cache: [1]: "146002".
biodb.TRACE[2022-10-15 08:04:49.637][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:49.638][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:49.639][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:49.639][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:49.640][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:49.641][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:49.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:49.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:49.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:49.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:49.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:49.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:49.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:49.650][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.DEBUG[2022-10-15 08:04:49.652][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:49.653][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:49.654][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.TRACE[2022-10-15 08:04:50.056][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002).
biodb.DEBUG[2022-10-15 08:04:50.479][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:50.484][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.content"
biodb.TRACE[2022-10-15 08:04:50.492][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.request"
biodb.TRACE[2022-10-15 08:04:50.498][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/146002.xml"
biodb.DEBUG[2022-10-15 08:04:50.501][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:50.512][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:50.513][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:50.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:50.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:50.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:50.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:50.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:50.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:50.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:50.522][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:50.523][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:50.524][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:50.524][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:50.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:50.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:50.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:50.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:50.530][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:50.531][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:50.531][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:50.532][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:50.533][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:50.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:50.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:50.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:50.538][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:50.538][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:50.539][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:50.540][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:50.541][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:50.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:50.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:50.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:50.545][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:50.546][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:50.547][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:50.547][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:50.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:50.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:50.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:50.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:50.553][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:50.554][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:50.554][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:50.555][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:50.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:50.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:50.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:50.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:50.561][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:50.561][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:50.562][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:50.563][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:50.564][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:50.564][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:50.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:50.566][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:50.567][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:50.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:50.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:50.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:50.571][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:50.572][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:50.573][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:50.573][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:50.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:50.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:50.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:50.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:50.579][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:50.579][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:50.580][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:50.581][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:50.582][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:50.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:50.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:50.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:50.586][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:50.587][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:50.588][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:50.588][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:50.589][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:50.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:50.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:50.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:50.594][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:50.594][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:50.595][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:50.602][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:50.603][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:50.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:50.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:50.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:50.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:50.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:50.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:50.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:50.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:50.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:50.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:50.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:50.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:50.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:50.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:50.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:50.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:50.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:50.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:50.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:50.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:50.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:50.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:50.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:50.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:50.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:50.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:50.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:50.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:50.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:50.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:50.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:50.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:50.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:50.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:50.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:50.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:50.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:50.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:50.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:50.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:50.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:50.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:50.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:50.639][self$createEntryFromContent] Accession numbers: 146002.
biodb.TRACE[2022-10-15 08:04:50.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:50.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:50.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:50.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:50.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:50.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:50.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:50.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:50.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:50.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:50.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:50.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:50.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:50.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:50.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:50.652][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:50.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:50.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:50.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:50.655][private$loadEntries] Creating entries from ids [1]: "65641".
biodb.DEBUG[2022-10-15 08:04:50.656][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:50.657][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65641".
biodb.TRACE[2022-10-15 08:04:50.658][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:50.659][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:50.659][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:50.660][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:50.661][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:50.662][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:50.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:50.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:50.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:50.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:50.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:50.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:50.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:50.671][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.DEBUG[2022-10-15 08:04:50.673][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:50.674][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:50.675][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.TRACE[2022-10-15 08:04:51.080][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641).
biodb.DEBUG[2022-10-15 08:04:51.505][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:51.510][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.content"
biodb.TRACE[2022-10-15 08:04:51.519][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.request"
biodb.TRACE[2022-10-15 08:04:51.526][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65641.xml"
biodb.DEBUG[2022-10-15 08:04:51.529][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:51.541][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:51.542][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:51.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:51.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:51.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:51.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:51.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:51.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:51.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:51.553][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:51.554][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:51.554][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:51.555][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:51.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:51.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:51.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:51.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:51.561][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:51.562][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:51.563][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:51.564][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:51.565][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:51.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:51.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:51.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:51.570][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:51.571][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:51.572][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:51.572][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:51.573][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:51.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:51.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:51.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:51.578][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:51.579][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:51.579][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:51.580][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:51.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:51.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:51.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:51.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:51.586][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:51.586][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:51.587][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:51.588][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:51.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:51.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:51.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:51.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:51.593][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:51.594][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:51.595][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:51.596][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:51.596][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:51.597][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:51.598][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:51.599][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:51.599][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:51.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:51.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:51.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:51.604][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:51.605][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:51.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:51.606][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:51.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:51.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:51.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:51.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:51.611][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:51.612][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:51.613][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:51.614][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:51.614][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:51.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:51.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:51.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:51.619][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:51.620][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:51.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:51.621][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:51.622][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:51.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:51.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:51.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:51.634][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:51.635][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:51.636][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:51.637][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:51.638][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:51.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:51.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:51.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:51.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:51.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:51.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:51.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:51.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:51.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:51.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:51.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:51.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:51.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:51.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:51.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:51.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:51.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:51.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:51.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:51.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:51.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:51.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:51.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:51.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:51.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:51.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:51.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:51.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:51.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:51.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:51.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:51.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:51.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:51.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:51.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:51.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:51.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:51.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:51.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:51.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:51.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:51.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:51.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:51.674][self$createEntryFromContent] Accession numbers: 65641.
biodb.TRACE[2022-10-15 08:04:51.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:51.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:51.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:51.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:51.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:51.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:51.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:51.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:51.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:51.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:51.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:51.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:51.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:51.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:51.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:51.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:51.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:51.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:51.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:51.691][private$loadEntries] Creating entries from ids [1]: "144071".
biodb.DEBUG[2022-10-15 08:04:51.692][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:51.693][cch$loadFileContent] Trying to load 1 files from cache: [1]: "144071".
biodb.TRACE[2022-10-15 08:04:51.694][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:51.695][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:51.696][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:51.696][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:51.697][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:51.698][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:51.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:51.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:51.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:51.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:51.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:51.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:51.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:51.708][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.DEBUG[2022-10-15 08:04:51.710][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:51.711][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:51.712][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.TRACE[2022-10-15 08:04:52.390][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071).
biodb.DEBUG[2022-10-15 08:04:52.816][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:52.821][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.content"
biodb.TRACE[2022-10-15 08:04:52.828][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.request"
biodb.TRACE[2022-10-15 08:04:52.836][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/144071.xml"
biodb.DEBUG[2022-10-15 08:04:52.838][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:52.849][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:52.850][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:52.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:52.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:52.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:52.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:52.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:52.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:52.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:52.860][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:52.861][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:52.862][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.862][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:52.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:52.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:52.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:52.868][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:52.869][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:52.870][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.870][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:52.871][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:52.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:52.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:52.876][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:52.877][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:52.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.878][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:52.879][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:52.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:52.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:52.884][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:52.885][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:52.885][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.886][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:52.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:52.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:52.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:52.892][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:52.892][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:52.893][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.894][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:52.895][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:52.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:52.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:52.900][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:52.900][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:52.901][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.902][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:52.903][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:52.903][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:52.904][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.905][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:52.906][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:52.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:52.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:52.910][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:52.911][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:52.912][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.913][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:52.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:52.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:52.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:52.918][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:52.919][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:52.920][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.920][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:52.921][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:52.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:52.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:52.926][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:52.927][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:52.928][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.935][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:52.936][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:52.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:52.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:52.942][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:52.943][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:52.944][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.944][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:52.945][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:52.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:52.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:52.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:52.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:52.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:52.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:52.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:52.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:52.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:52.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:52.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:52.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:52.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:52.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:52.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:52.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:52.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:52.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:52.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:52.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:52.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:52.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:52.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:52.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:52.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:52.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:52.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:52.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:52.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:52.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:52.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:52.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:52.980][self$createEntryFromContent] Accession numbers: 144071.
biodb.TRACE[2022-10-15 08:04:52.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:52.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:52.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:52.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:52.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:52.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:52.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:52.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:52.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:52.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:52.990][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:52.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:52.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:52.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:52.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:52.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:52.997][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:52.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:52.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:52.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:53.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:53.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:53.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:53.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:53.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:53.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:53.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:53.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:53.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:53.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:53.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:53.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:53.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:53.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:53.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:53.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:53.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:53.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:53.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:53.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:53.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:53.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:53.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:53.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:53.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:53.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:53.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:53.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:53.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:53.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:53.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:53.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:53.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:53.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:53.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:53.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:53.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:53.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:53.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:53.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:53.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:53.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:53.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:53.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:53.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:53.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:53.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:53.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:53.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:53.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:53.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:53.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:53.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:53.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:53.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:53.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:53.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:53.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:53.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:53.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:53.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:53.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:53.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:53.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:53.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:53.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:53.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:53.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:53.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:53.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:53.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:53.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:53.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:53.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:53.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:53.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:53.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:53.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:53.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:53.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:53.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:53.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:53.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:53.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:53.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:53.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:53.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:53.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:53.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:53.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:53.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:53.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:53.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:53.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:53.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:53.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:53.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:53.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:53.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:53.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:53.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:53.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:53.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:53.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:53.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:53.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:53.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:53.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:53.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:53.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:53.095][private$loadEntries] Creating entries from ids [1]: "168650".
biodb.DEBUG[2022-10-15 08:04:53.096][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:53.097][cch$loadFileContent] Trying to load 1 files from cache: [1]: "168650".
biodb.TRACE[2022-10-15 08:04:53.098][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:53.099][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:53.099][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:53.100][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:53.101][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:53.102][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:53.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:53.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:53.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:53.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:53.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:53.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:53.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:53.111][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.DEBUG[2022-10-15 08:04:53.113][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:53.114][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:53.115][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.TRACE[2022-10-15 08:04:53.529][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650).
biodb.DEBUG[2022-10-15 08:04:53.947][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:53.952][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.content"
biodb.TRACE[2022-10-15 08:04:53.967][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.request"
biodb.TRACE[2022-10-15 08:04:53.975][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/168650.xml"
biodb.DEBUG[2022-10-15 08:04:53.977][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:53.988][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:53.989][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:53.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:53.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:53.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:53.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:53.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:53.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:53.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:53.998][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:53.999][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:54.000][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.000][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:54.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:54.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:54.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:54.005][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:54.006][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:54.007][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.008][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:54.008][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:54.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:54.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:54.013][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:54.014][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:54.014][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.015][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:54.016][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:54.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:54.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:54.020][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:54.021][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:54.022][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.022][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:54.023][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:54.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:54.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:54.028][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:54.028][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:54.029][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.030][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:54.031][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:54.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:54.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:54.035][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:54.036][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:54.037][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.038][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:54.038][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:54.039][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:54.040][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.041][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:54.041][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:54.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:54.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:54.046][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:54.047][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:54.047][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.048][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:54.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:54.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:54.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:54.054][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:54.054][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:54.055][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.056][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:54.057][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:54.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:54.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:54.062][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:54.062][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:54.063][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.064][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:54.065][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:54.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:54.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:54.069][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:54.070][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:54.071][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.071][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:54.072][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:54.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:54.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:54.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:54.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:54.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:54.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:54.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:54.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:54.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:54.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:54.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:54.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:54.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:54.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:54.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:54.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:54.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:54.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:54.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:54.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:54.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:54.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:54.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:54.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:54.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:54.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:54.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:54.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:54.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:54.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:54.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:54.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:54.108][self$createEntryFromContent] Accession numbers: 168650.
biodb.TRACE[2022-10-15 08:04:54.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:54.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:54.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:54.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:54.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:54.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:54.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:54.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:54.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:54.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:54.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:54.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:54.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:54.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:54.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:54.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:54.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:54.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:54.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:54.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:54.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:54.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:54.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:54.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:54.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:54.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:54.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:54.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:54.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:54.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:54.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:54.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:54.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:54.141][private$loadEntries] Creating entries from ids [1]: "169305".
biodb.DEBUG[2022-10-15 08:04:54.142][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:54.143][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169305".
biodb.TRACE[2022-10-15 08:04:54.144][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:54.145][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:54.145][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:54.146][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:54.147][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:54.148][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:54.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:54.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:54.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:54.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:54.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:54.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:54.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:54.157][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.DEBUG[2022-10-15 08:04:54.159][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:54.160][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:54.161][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.TRACE[2022-10-15 08:04:54.564][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305).
biodb.DEBUG[2022-10-15 08:04:54.999][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:55.004][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.content"
biodb.TRACE[2022-10-15 08:04:55.011][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.request"
biodb.TRACE[2022-10-15 08:04:55.018][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169305.xml"
biodb.DEBUG[2022-10-15 08:04:55.020][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:55.030][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:55.031][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:55.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:55.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:55.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:55.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:55.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:55.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:55.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:55.040][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:55.041][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:55.042][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:55.043][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:55.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:55.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:55.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:55.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:55.048][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:55.049][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:55.049][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:55.050][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:55.051][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:55.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:55.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:55.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:55.055][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:55.056][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:55.057][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:55.058][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:55.059][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:55.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:55.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:55.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:55.063][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:55.064][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:55.065][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:55.065][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:55.066][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:55.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:55.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:55.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:55.071][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:55.071][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:55.072][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:55.073][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:55.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:55.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:55.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:55.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:55.078][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:55.079][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:55.080][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:55.080][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:55.081][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:55.082][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:55.083][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:55.083][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:55.084][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:55.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:55.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:55.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:55.089][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:55.090][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:55.090][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:55.091][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:55.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:55.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:55.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:55.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:55.097][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:55.097][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:55.098][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:55.099][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:55.100][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:55.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:55.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:55.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:55.105][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:55.105][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:55.106][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:55.107][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:55.108][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:55.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:55.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:55.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:55.112][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:55.113][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:55.114][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:55.115][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:55.115][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:55.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:55.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:55.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:55.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:55.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:55.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:55.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:55.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:55.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:55.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:55.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:55.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:55.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:55.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:55.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:55.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:55.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:55.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:55.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:55.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:55.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:55.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:55.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:55.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:55.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:55.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:55.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:55.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:55.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:55.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:55.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:55.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:55.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:55.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:55.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:55.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:55.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:55.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:55.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:55.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:55.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:55.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:55.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:55.150][self$createEntryFromContent] Accession numbers: 169305.
biodb.TRACE[2022-10-15 08:04:55.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:55.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:55.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:55.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:55.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:55.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:55.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:55.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:55.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:55.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:55.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:55.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:55.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:55.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:55.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:55.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:55.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:55.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:55.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:55.167][private$loadEntries] Creating entries from ids [1]: "176869".
biodb.DEBUG[2022-10-15 08:04:55.167][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:55.168][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176869".
biodb.TRACE[2022-10-15 08:04:55.169][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:55.170][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:55.171][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:55.172][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:55.172][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:55.173][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:55.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:55.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:55.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:55.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:55.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:55.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:55.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:55.182][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.DEBUG[2022-10-15 08:04:55.184][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:55.185][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:55.186][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.TRACE[2022-10-15 08:04:55.592][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869).
biodb.DEBUG[2022-10-15 08:04:56.028][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:56.033][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.content"
biodb.TRACE[2022-10-15 08:04:56.040][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.request"
biodb.TRACE[2022-10-15 08:04:56.047][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176869.xml"
biodb.DEBUG[2022-10-15 08:04:56.050][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:56.060][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:56.061][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:56.062][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:56.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:56.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:56.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:56.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:56.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:56.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:56.071][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:56.071][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:56.072][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:56.073][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:56.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:56.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:56.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:56.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:56.078][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:56.079][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:56.080][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:56.081][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:56.082][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:56.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:56.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:56.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:56.086][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:56.087][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:56.088][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:56.089][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:56.090][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:56.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:56.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:56.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:56.094][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:56.095][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:56.096][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:56.097][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:56.097][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:56.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:56.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:56.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:56.102][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:56.103][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:56.104][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:56.104][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:56.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:56.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:56.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:56.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:56.110][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:56.111][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:56.111][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:56.112][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:56.113][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:56.114][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:56.115][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:56.115][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:56.116][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:56.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:56.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:56.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:56.121][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:56.122][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:56.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:56.123][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:56.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:56.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:56.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:56.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:56.129][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:56.130][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:56.130][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:56.131][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:56.132][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:56.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:56.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:56.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:56.137][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:56.138][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:56.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:56.139][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:56.140][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:56.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:56.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:56.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:56.145][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:56.146][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:56.146][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:56.147][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:56.148][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:56.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:56.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:56.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:56.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:56.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:56.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:56.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:56.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:56.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:56.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:56.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:56.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:56.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:56.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:56.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:56.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:56.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:56.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:56.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:56.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:56.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:56.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:56.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:56.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:56.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:56.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:56.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:56.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:56.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:56.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:56.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:56.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:56.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:56.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:56.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:56.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:56.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:56.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:56.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:56.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:56.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:56.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:56.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:56.183][self$createEntryFromContent] Accession numbers: 176869.
biodb.TRACE[2022-10-15 08:04:56.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:56.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:56.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:56.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:56.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:56.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:56.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:56.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:56.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:56.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:56.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:56.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:56.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:56.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:56.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:56.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:56.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:56.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:56.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:56.200][private$loadEntries] Creating entries from ids [1]: "185696".
biodb.DEBUG[2022-10-15 08:04:56.201][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:56.202][cch$loadFileContent] Trying to load 1 files from cache: [1]: "185696".
biodb.TRACE[2022-10-15 08:04:56.203][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:56.204][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:56.205][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:56.205][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:56.206][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:56.207][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:56.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:56.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:56.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:56.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:56.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:56.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:56.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:56.217][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.DEBUG[2022-10-15 08:04:56.219][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:56.219][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:56.220][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.TRACE[2022-10-15 08:04:56.850][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696).
biodb.DEBUG[2022-10-15 08:04:57.267][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:57.272][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.content"
biodb.TRACE[2022-10-15 08:04:57.280][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.request"
biodb.TRACE[2022-10-15 08:04:57.287][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/185696.xml"
biodb.DEBUG[2022-10-15 08:04:57.290][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:57.301][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:57.302][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:57.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:57.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:57.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:57.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:57.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:57.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:57.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:57.312][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:57.313][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:57.314][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:57.315][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:57.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:57.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:57.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:57.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:57.321][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:57.321][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:57.322][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:57.323][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:57.324][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:57.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:57.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:57.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:57.329][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:57.329][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:57.330][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:57.331][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:57.332][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:57.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:57.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:57.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:57.337][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:57.337][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:57.338][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:57.339][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:57.340][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:57.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:57.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:57.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:57.345][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:57.345][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:57.346][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:57.347][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:57.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:57.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:57.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:57.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:57.352][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:57.353][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:57.354][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:57.355][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:57.356][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:57.356][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:57.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:57.358][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:57.359][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:57.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:57.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:57.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:57.363][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:57.364][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:57.365][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:57.365][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:57.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:57.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:57.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:57.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:57.371][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:57.372][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:57.372][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:57.373][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:57.374][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:57.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:57.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:57.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:57.379][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:57.380][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:57.380][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:57.381][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:57.382][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:57.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:57.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:57.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:57.387][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:57.387][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:57.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:57.389][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:57.390][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:57.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:57.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:57.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:57.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:57.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:57.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:57.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:57.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:57.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:57.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:57.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:57.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:57.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:57.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:57.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:57.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:57.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:57.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:57.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:57.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:57.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:57.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:57.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:57.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:57.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:57.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:57.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:57.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:57.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:57.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:57.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:57.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:57.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:57.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:57.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:57.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:57.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:57.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:57.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:57.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:57.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:57.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:57.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:57.425][self$createEntryFromContent] Accession numbers: 185696.
biodb.TRACE[2022-10-15 08:04:57.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:57.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:57.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:57.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:57.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:57.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:57.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:57.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:57.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:57.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:57.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:57.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:57.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:57.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:57.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:57.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:57.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:57.441][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:57.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:57.443][private$loadEntries] Creating entries from ids [1]: "190762".
biodb.DEBUG[2022-10-15 08:04:57.443][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:57.445][cch$loadFileContent] Trying to load 1 files from cache: [1]: "190762".
biodb.TRACE[2022-10-15 08:04:57.445][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:57.446][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:57.447][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:57.448][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:57.449][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:57.449][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:57.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:57.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:57.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:57.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:57.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:57.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:57.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:57.459][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.DEBUG[2022-10-15 08:04:57.461][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:57.462][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:57.463][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.TRACE[2022-10-15 08:04:57.877][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762).
biodb.DEBUG[2022-10-15 08:04:58.295][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:58.300][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.content"
biodb.TRACE[2022-10-15 08:04:58.308][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.request"
biodb.TRACE[2022-10-15 08:04:58.314][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/190762.xml"
biodb.DEBUG[2022-10-15 08:04:58.317][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:58.328][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:58.328][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:58.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:58.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:58.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:58.335][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:58.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:58.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:58.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:58.338][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:58.339][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:58.340][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:58.341][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:58.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:58.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:58.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:58.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:58.346][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:58.347][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:58.348][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:58.348][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:58.349][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:58.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:58.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:58.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:58.354][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:58.355][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:58.356][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:58.356][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:58.357][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:58.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:58.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:58.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:58.362][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:58.363][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:58.364][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:58.364][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:58.365][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:58.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:58.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:58.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:58.370][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:58.371][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:58.371][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:58.372][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:58.373][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:58.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:58.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:58.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:58.378][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:58.378][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:58.379][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:58.380][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:58.381][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:58.381][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:58.382][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:58.383][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:58.383][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:58.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:58.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:58.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:58.388][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:58.389][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:58.390][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:58.390][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:58.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:58.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:58.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:58.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:58.396][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:58.397][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:58.397][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:58.398][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:58.399][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:58.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:58.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:58.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:58.404][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:58.404][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:58.405][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:58.406][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:58.407][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:58.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:58.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:58.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:58.411][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:58.412][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:58.413][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:58.413][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:58.414][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:58.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:58.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:58.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:58.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:58.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:58.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:58.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:58.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:58.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:58.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:58.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:58.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:58.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:58.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:58.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:58.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:58.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:58.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:58.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:58.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:58.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:58.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:58.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:58.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:58.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:58.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:58.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:58.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:58.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:58.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:58.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:58.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:58.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:58.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:58.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:58.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:58.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:58.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:58.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:58.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:58.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:58.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:58.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:58.449][self$createEntryFromContent] Accession numbers: 190762.
biodb.TRACE[2022-10-15 08:04:58.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:58.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:58.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:58.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:58.453][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:58.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:58.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:58.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:58.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:58.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:58.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:58.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:58.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:58.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:58.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:58.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:58.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:58.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:58.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:58.467][private$loadEntries] Creating entries from ids [1]: "193176".
biodb.DEBUG[2022-10-15 08:04:58.467][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:04:58.468][cch$loadFileContent] Trying to load 1 files from cache: [1]: "193176".
biodb.TRACE[2022-10-15 08:04:58.469][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:04:58.470][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:04:58.471][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:04:58.472][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:04:58.472][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:04:58.473][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:04:58.475][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:58.476][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:58.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:58.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:58.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:58.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:58.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:58.483][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
biodb.DEBUG[2022-10-15 08:04:58.485][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:04:58.485][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:04:58.493][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
biodb.TRACE[2022-10-15 08:04:58.894][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176).
biodb.DEBUG[2022-10-15 08:04:59.319][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:04:59.324][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/343c078fd7b00f04bd71e6f2aebb6ed3.content"
biodb.TRACE[2022-10-15 08:04:59.331][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/343c078fd7b00f04bd71e6f2aebb6ed3.request"
biodb.TRACE[2022-10-15 08:04:59.338][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/193176.xml"
biodb.DEBUG[2022-10-15 08:04:59.340][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:04:59.351][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:04:59.351][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:04:59.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:59.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:59.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:59.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:59.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:59.359][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:59.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:59.361][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:59.362][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:59.363][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.364][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:59.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:59.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.369][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:59.370][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:59.371][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.371][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.372][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:04:59.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:04:59.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.377][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:59.378][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:59.378][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.379][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.380][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:04:59.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:04:59.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.385][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:59.386][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:59.386][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.387][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.388][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:04:59.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:04:59.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.393][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:59.393][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:59.394][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.395][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:04:59.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:04:59.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.400][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:59.401][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:04:59.402][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.402][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.403][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:59.404][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.405][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.406][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.406][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:04:59.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.411][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:59.412][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:59.413][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.413][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:59.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:04:59.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.419][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:59.419][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:59.420][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.421][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.422][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:04:59.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:04:59.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.427][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:59.427][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:59.428][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.429][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.430][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:04:59.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:04:59.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.434][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:59.435][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:59.436][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.437][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.437][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:04:59.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:04:59.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:59.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:59.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:59.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:59.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:59.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:59.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:59.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:59.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:59.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:59.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:59.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:59.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:04:59.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:04:59.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:59.472][self$createEntryFromContent] Accession numbers: 193176.
biodb.TRACE[2022-10-15 08:04:59.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:59.482][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:04:59.484][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:04:59.485][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dd9d19fb78fcc7453eff2e9dd7ba5702".
biodb.TRACE[2022-10-15 08:04:59.486][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:04:59.487][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.content".
biodb.DEBUG[2022-10-15 08:04:59.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:59.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:59.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:59.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:59.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:59.496][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:59.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:59.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:59.514][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:04:59.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:59.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:59.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:59.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:59.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:59.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:59.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:59.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.529][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:59.530][private$selectFields]
biodb.TRACE[2022-10-15 08:04:59.531][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:59.531][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:59.532][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:59.533][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.533][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.534][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.535][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.535][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.536][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.537][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.538][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.538][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:59.539][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:59.540][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.540][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.541][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.542][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.542][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:59.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.552][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-10-15 08:04:59.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:59.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:59.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:59.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:59.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:59.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:59.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:59.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.566][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:59.567][private$selectFields]
biodb.TRACE[2022-10-15 08:04:59.568][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:59.568][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:59.569][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:59.570][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.570][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.571][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.572][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.573][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.573][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.574][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.575][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.575][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:59.576][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:59.577][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.578][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.578][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.579][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.580][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:59.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.590][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2022-10-15 08:04:59.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:59.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:59.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:59.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:59.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:59.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:59.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:59.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.605][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:59.605][private$selectFields]
biodb.TRACE[2022-10-15 08:04:59.606][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:59.607][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:59.607][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:59.608][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.609][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.610][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.610][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.611][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.612][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.613][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.613][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.614][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:59.615][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:59.616][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.616][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.617][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.618][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.619][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:59.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.628][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-10-15 08:04:59.629][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:04:59.630][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:04:59.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:59.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:59.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:59.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:59.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:59.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:59.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:59.683][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:04:59.685][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:04:59.686][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ebf8c17fa19fb0caf99d83ca8441a2ac".
biodb.TRACE[2022-10-15 08:04:59.686][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:04:59.687][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.content".
biodb.DEBUG[2022-10-15 08:04:59.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:59.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:59.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:59.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:59.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:59.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:59.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:59.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:59.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:59.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:59.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:59.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:59.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:59.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:59.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:59.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:59.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:59.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:59.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:59.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:59.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:59.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:59.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:59.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:59.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:59.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:59.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:59.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:59.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:59.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:59.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:59.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:59.761][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:04:59.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:59.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:59.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:59.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:59.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:59.768][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:59.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:59.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.775][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:59.776][private$selectFields]
biodb.TRACE[2022-10-15 08:04:59.777][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:59.777][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:59.778][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:59.779][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.779][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.780][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.781][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.782][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.782][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.784][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.784][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:59.785][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:59.786][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.787][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.787][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.788][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.789][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:59.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.799][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2022-10-15 08:04:59.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:59.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:59.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:59.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:59.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:59.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:59.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:59.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.813][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:59.814][private$selectFields]
biodb.TRACE[2022-10-15 08:04:59.815][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:59.816][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:59.816][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:59.817][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.818][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.819][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.819][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.820][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.821][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.822][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.822][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.823][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:59.824][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:59.824][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.825][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.827][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.827][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:59.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.837][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2022-10-15 08:04:59.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:59.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:59.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:59.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:59.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:59.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:59.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:59.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.851][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:59.852][private$selectFields]
biodb.TRACE[2022-10-15 08:04:59.852][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:04:59.853][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:04:59.854][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:59.855][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.855][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.856][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.857][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.857][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.858][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.859][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.859][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.860][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:59.861][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:04:59.861][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.862][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.863][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.864][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.864][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:04:59.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:04:59.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.874][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2022-10-15 08:04:59.874][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:04:59.875][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:04:59.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:59.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:59.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:59.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:59.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:59.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:59.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:04:59.911][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:04:59.914][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:04:59.915][cch$loadFileContent] Trying to load 1 files from cache: [1]: "152225e020c3e5947a0f5a90f021cee7".
biodb.TRACE[2022-10-15 08:04:59.916][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:04:59.916][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.content".
biodb.DEBUG[2022-10-15 08:04:59.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:59.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:59.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:59.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:59.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:59.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:59.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:59.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:59.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:59.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:59.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:59.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:59.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:59.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:59.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:59.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:59.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:59.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:59.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:59.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:59.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:59.964][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:59.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:59.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:59.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:59.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:59.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:59.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:59.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:59.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:59.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:59.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:04:59.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:04:59.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:04:59.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:04:59.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:04:59.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:04:59.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:04:59.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:04:59.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:04:59.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:04:59.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:04:59.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:00.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:00.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:00.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:00.031][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:00.040][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:05:00.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.047][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:00.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.055][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.055][private$selectFields]
biodb.TRACE[2022-10-15 08:05:00.056][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:00.057][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:00.057][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.058][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.059][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.060][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.061][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.062][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.062][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.063][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.064][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.065][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.065][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.066][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.067][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.067][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.068][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:00.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.078][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2022-10-15 08:05:00.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:00.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.092][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.092][private$selectFields]
biodb.TRACE[2022-10-15 08:05:00.093][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:00.094][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:00.094][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.095][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.096][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.097][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.097][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.098][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.099][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.100][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.100][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.101][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.102][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.102][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.103][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.104][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.104][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.105][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:00.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.115][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2022-10-15 08:05:00.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.120][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:00.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.129][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.130][private$selectFields]
biodb.TRACE[2022-10-15 08:05:00.130][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:00.131][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:00.132][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.133][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.133][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.134][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.135][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.135][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.136][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.137][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.138][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.138][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.139][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.140][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.141][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.141][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.142][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.143][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:00.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.152][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2022-10-15 08:05:00.153][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:05:00.154][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:05:00.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:00.196][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:00.198][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:00.199][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9686ce9c957a368dd8f5b4cc9c5b15b3".
biodb.TRACE[2022-10-15 08:05:00.200][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:00.201][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.content".
biodb.DEBUG[2022-10-15 08:05:00.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:00.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:00.219][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:00.221][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:00.222][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5d833e77a1be58060d0c3916a1e1b293".
biodb.TRACE[2022-10-15 08:05:00.223][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:00.224][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.content".
biodb.DEBUG[2022-10-15 08:05:00.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:00.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:00.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:00.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:00.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:00.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:00.274][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:05:00.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:00.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.289][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.290][private$selectFields]
biodb.TRACE[2022-10-15 08:05:00.290][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:00.291][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:00.292][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.292][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.293][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.294][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.295][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.295][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.296][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.297][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.297][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.298][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.299][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.300][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.300][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.301][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.302][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.303][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:00.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.312][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2022-10-15 08:05:00.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:00.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.326][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.327][private$selectFields]
biodb.TRACE[2022-10-15 08:05:00.328][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:00.328][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:00.329][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.330][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.331][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.331][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.332][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.333][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.333][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.334][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.335][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.336][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.336][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.337][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.338][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.338][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.339][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.340][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:00.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.350][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2022-10-15 08:05:00.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:00.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.364][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.364][private$selectFields]
biodb.TRACE[2022-10-15 08:05:00.365][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:00.366][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:00.367][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.367][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.368][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.369][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.369][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.370][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.371][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.371][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.372][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.373][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.374][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.374][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.375][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.376][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.376][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.377][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:00.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.387][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2022-10-15 08:05:00.387][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:05:00.388][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:05:00.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:00.445][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:00.447][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:00.448][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2022-10-15 08:05:00.449][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:00.450][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2022-10-15 08:05:00.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:00.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:00.468][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:00.470][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:00.471][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2022-10-15 08:05:00.472][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:00.473][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2022-10-15 08:05:00.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:00.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:00.490][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:00.492][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:00.493][cch$loadFileContent] Trying to load 1 files from cache: [1]: "94c7655c8f372fb2982c15119402bcba".
biodb.TRACE[2022-10-15 08:05:00.494][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:00.495][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content".
biodb.DEBUG[2022-10-15 08:05:00.497][private$bdb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:05:00.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:00.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.511][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.511][private$selectFields]
biodb.TRACE[2022-10-15 08:05:00.512][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:00.513][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:00.513][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.514][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.515][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.515][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.516][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.517][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.518][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.518][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.519][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.520][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.520][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.521][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.522][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.522][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.523][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.524][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:00.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.533][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2022-10-15 08:05:00.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:00.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.547][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.547][private$selectFields]
biodb.TRACE[2022-10-15 08:05:00.548][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:00.549][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:00.549][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.550][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.551][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.551][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.552][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.553][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.553][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.554][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.555][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.555][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.556][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.557][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.558][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.558][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.559][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.560][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:00.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.569][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-10-15 08:05:00.569][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:05:00.570][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:05:00.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:00.609][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:00.612][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:00.613][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2022-10-15 08:05:00.614][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:00.615][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2022-10-15 08:05:00.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:00.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:00.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.637][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:00.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:00.648][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:00.650][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:00.651][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2022-10-15 08:05:00.652][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:00.653][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2022-10-15 08:05:00.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:00.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:00.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:00.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:00.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:00.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:00.703][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:05:00.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.709][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:00.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.718][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.718][private$selectFields]
biodb.TRACE[2022-10-15 08:05:00.719][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:00.720][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:00.721][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.721][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.722][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.723][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.723][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.724][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.725][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.726][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.726][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.727][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.728][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.728][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.729][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.731][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.731][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:00.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.741][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-10-15 08:05:00.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:00.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.754][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.755][private$selectFields]
biodb.TRACE[2022-10-15 08:05:00.756][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:00.756][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:00.757][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.758][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.758][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.759][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.760][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.760][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.761][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.762][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.763][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.763][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.764][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.765][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.765][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.766][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.767][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.768][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:00.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.777][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-10-15 08:05:00.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.784][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:00.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.791][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.792][private$selectFields]
biodb.TRACE[2022-10-15 08:05:00.793][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:00.793][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:00.794][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.795][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.795][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.796][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.797][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.797][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.798][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.799][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.800][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.800][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.801][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:00.802][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.803][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.803][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.804][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.805][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:00.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:00.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.814][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-10-15 08:05:00.815][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:05:00.815][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:05:00.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:00.857][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:00.859][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:00.860][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2022-10-15 08:05:00.861][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:00.861][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2022-10-15 08:05:00.863][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.864][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:00.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:00.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:00.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:00.895][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:00.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:00.911][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:00.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:00.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.927][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.932][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:00.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:00.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:00.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:00.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.964][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:00.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:00.975][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:00.977][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:00.978][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2022-10-15 08:05:00.979][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:00.980][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2022-10-15 08:05:00.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:00.986][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:00.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:00.987][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:00.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:00.989][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:00.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:00.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:00.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:00.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:00.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:00.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:01.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:01.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:01.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:01.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:01.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:01.014][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:01.016][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:01.017][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dd9d19fb78fcc7453eff2e9dd7ba5702".
biodb.TRACE[2022-10-15 08:05:01.018][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:01.019][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.content".
biodb.DEBUG[2022-10-15 08:05:01.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:01.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:01.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:01.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:01.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:01.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:01.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:01.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:01.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:01.044][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:01.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:01.048][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:01.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:01.050][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:01.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:01.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:01.060][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:05:01.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:01.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:01.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:01.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:01.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:01.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:01.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:01.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.074][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.075][private$selectFields]
biodb.TRACE[2022-10-15 08:05:01.075][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:01.076][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:01.077][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.077][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.078][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.079][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.079][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.080][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.081][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.081][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.082][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.083][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.084][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.084][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.085][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.086][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.086][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.087][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:01.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.096][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-10-15 08:05:01.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:01.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:01.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:01.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:01.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:01.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:01.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:01.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.110][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.111][private$selectFields]
biodb.TRACE[2022-10-15 08:05:01.112][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:01.112][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:01.113][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.114][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.115][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.115][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.116][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.117][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.117][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.118][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.119][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.120][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.120][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.121][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.122][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.122][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.123][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.124][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:01.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.133][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2022-10-15 08:05:01.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:01.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:01.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:01.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:01.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:01.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:01.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:01.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.148][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.148][private$selectFields]
biodb.TRACE[2022-10-15 08:05:01.149][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:01.150][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:01.150][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.151][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.152][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.152][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.153][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.154][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.155][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.155][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.156][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.157][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.157][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.158][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.159][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.160][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.160][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.161][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:01.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.171][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2022-10-15 08:05:01.171][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:05:01.172][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:05:01.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:01.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:01.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:01.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:01.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:01.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:01.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:01.224][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:01.227][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:01.228][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2b6f29bb7a7663ff23fb5e7dcae5c27f".
biodb.TRACE[2022-10-15 08:05:01.228][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:01.229][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.content".
biodb.DEBUG[2022-10-15 08:05:01.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:01.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:01.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:01.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:01.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:01.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:01.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:01.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:01.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:01.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:01.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:01.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:01.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:01.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:01.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:01.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:01.405][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:01.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:01.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:01.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:01.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:01.412][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:01.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:01.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:01.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:01.423][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:01.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:01.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:01.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:01.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:01.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:01.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:01.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:01.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:01.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:01.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:01.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:01.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:01.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:01.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.453][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:01.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:01.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:01.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:01.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:01.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:01.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:01.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:01.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:01.473][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:05:01.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:01.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:01.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:01.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:01.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:01.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:01.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:01.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.488][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.488][private$selectFields]
biodb.TRACE[2022-10-15 08:05:01.489][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:01.490][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:01.491][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.491][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.492][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.493][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.493][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.494][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.495][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.496][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.496][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.497][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.498][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.499][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.499][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.500][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.501][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.502][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:01.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.512][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-10-15 08:05:01.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:01.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:01.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:01.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:01.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:01.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:01.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:01.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.526][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.527][private$selectFields]
biodb.TRACE[2022-10-15 08:05:01.528][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:01.528][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:01.529][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.530][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.531][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.531][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.532][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.533][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.534][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.534][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.535][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.536][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.536][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.537][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.538][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.539][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.540][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.540][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:01.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.550][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2022-10-15 08:05:01.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:01.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:01.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:01.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:01.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:01.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:01.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:01.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.565][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.566][private$selectFields]
biodb.TRACE[2022-10-15 08:05:01.567][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:01.567][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:01.568][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.569][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.570][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.570][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.571][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.572][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.573][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.573][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.574][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.575][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.576][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.576][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.577][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.578][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.579][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.579][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:01.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.589][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2022-10-15 08:05:01.590][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:05:01.591][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:05:01.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:01.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:01.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:01.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:01.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:01.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:01.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:01.633][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:01.636][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:01.636][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9a13652ab89a613a3b0e10d3b6cb10a0".
biodb.TRACE[2022-10-15 08:05:01.637][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:01.639][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.content".
biodb.DEBUG[2022-10-15 08:05:01.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:01.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:01.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:01.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:01.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:01.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:01.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:01.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:01.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:01.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:01.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:01.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:01.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:01.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:01.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:01.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:01.675][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:01.676][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:01.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:01.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:01.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:01.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:01.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:01.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:01.692][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:05:01.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:01.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:01.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:01.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:01.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:01.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:01.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:01.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.707][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.707][private$selectFields]
biodb.TRACE[2022-10-15 08:05:01.708][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:01.709][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:01.710][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.710][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.711][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.712][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.713][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.713][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.714][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.715][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.716][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.716][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.717][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.718][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.719][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.719][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.720][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.721][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:01.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.731][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-10-15 08:05:01.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:01.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:01.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:01.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:01.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:01.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:01.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:01.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.748][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.748][private$selectFields]
biodb.TRACE[2022-10-15 08:05:01.749][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:01.750][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:01.751][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.751][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.752][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.753][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.753][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.754][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.755][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.756][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.757][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.757][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.758][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.759][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.760][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.760][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.761][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.762][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:01.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.772][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-10-15 08:05:01.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:01.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:01.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:01.778][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:01.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:01.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:01.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:01.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.787][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.787][private$selectFields]
biodb.TRACE[2022-10-15 08:05:01.788][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:01.789][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:01.789][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.790][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.791][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.792][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.793][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.794][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.795][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.795][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.796][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.797][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:01.798][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.798][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.799][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.800][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.801][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:01.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:01.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.810][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-10-15 08:05:01.811][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:05:01.812][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:05:01.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:01.814][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:01.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:01.818][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:01.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:01.820][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:01.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:01.850][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:01.852][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:01.853][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a985300ab8a01d49254fbf993ad91279".
biodb.TRACE[2022-10-15 08:05:01.854][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:01.855][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.content".
biodb.DEBUG[2022-10-15 08:05:01.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:01.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:01.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:01.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:01.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:01.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:01.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:01.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:01.877][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:01.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:01.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:01.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:01.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:01.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:01.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:01.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:01.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:01.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:01.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:01.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:01.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:01.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:01.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:01.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:01.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:01.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:01.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:01.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:01.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:01.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:01.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:01.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:01.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:01.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:01.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:01.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:01.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:01.932][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:01.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:01.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:01.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:01.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:01.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:01.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:01.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:01.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:01.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:01.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:01.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:01.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:01.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:01.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:01.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:01.964][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:01.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:01.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:01.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:01.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:01.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:01.980][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:01.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:01.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:01.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:01.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:01.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:01.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:01.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:01.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:01.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:01.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:01.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:01.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:01.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:01.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:01.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:02.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:02.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:02.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:02.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:02.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:02.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:02.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:02.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:02.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:02.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:02.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:02.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:02.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:02.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:02.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:02.031][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:02.039][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:02.040][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:02.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:02.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:02.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:02.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:02.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:02.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:02.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:02.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:02.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:02.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:02.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:02.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:02.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:02.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:02.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:02.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:02.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:02.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:02.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:02.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:02.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:02.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:02.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:02.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:02.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:02.096][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:02.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:02.097][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:02.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:02.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:02.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:02.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:02.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:02.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:02.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:02.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:02.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:02.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:02.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:02.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:02.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:02.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:02.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:02.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:02.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:02.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:02.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:02.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:02.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:02.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:02.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:02.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:02.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:02.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:02.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:02.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:02.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:02.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:02.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:02.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:02.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:02.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:02.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:02.171][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:02.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:02.175][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:02.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:02.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:02.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:02.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:02.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:02.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:02.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:02.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:02.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:02.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:02.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:02.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:02.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:02.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:02.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:02.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:02.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:02.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:02.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:02.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:02.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:02.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:02.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:02.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:02.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:02.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:02.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:02.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:02.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:02.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:02.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:02.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:02.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:02.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:02.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:02.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:02.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:02.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:02.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:02.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:02.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:02.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:02.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:02.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:02.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:02.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:02.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:02.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:02.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:02.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:02.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:02.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:02.282][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:02.285][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:02.285][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dd9d19fb78fcc7453eff2e9dd7ba5702".
biodb.TRACE[2022-10-15 08:05:02.286][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:02.287][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.content".
biodb.DEBUG[2022-10-15 08:05:02.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:02.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:02.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:02.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:02.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:02.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:02.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:02.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.301][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:02.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:02.307][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:05:02.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:02.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:02.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:02.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:02.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:02.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:02.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:02.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.325][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:02.325][private$selectFields]
biodb.TRACE[2022-10-15 08:05:02.326][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:02.327][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:02.327][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:02.328][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.329][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.330][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.330][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.331][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.332][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.332][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.333][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.334][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:02.334][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:02.335][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.336][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.336][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.337][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.338][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:02.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.347][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-10-15 08:05:02.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:02.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:02.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:02.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:02.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:02.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:02.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:02.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.360][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:02.361][private$selectFields]
biodb.TRACE[2022-10-15 08:05:02.362][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:02.362][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:02.363][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:02.364][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.364][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.365][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.366][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.366][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.367][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.368][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.368][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.369][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:02.370][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:02.370][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.371][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.372][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.373][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.373][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:02.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.383][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2022-10-15 08:05:02.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:02.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:02.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:02.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:02.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:02.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:02.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:02.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.396][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:02.397][private$selectFields]
biodb.TRACE[2022-10-15 08:05:02.398][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:02.398][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:02.399][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:02.400][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.400][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.401][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.402][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.402][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.403][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.404][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.405][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.405][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:02.406][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:02.407][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.407][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.408][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.409][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.410][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:02.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:02.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.419][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-10-15 08:05:02.420][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:05:02.420][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-10-15 08:05:02.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:02.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:02.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:02.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:02.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:02.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:02.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:02.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:02.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:02.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:02.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:02.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:02.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:02.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:02.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:02.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:02.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:02.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:02.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:02.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:02.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:02.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:02.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:02.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:02.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:02.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:02.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:02.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:02.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:02.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:02.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:02.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:02.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:02.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:02.507][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:02.510][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:02.510][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:02.512][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-10-15 08:05:02.940][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-10-15 08:05:03.576][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:03.581][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content"
biodb.TRACE[2022-10-15 08:05:03.588][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.request"
biodb.DEBUG[2022-10-15 08:05:03.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:03.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:03.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:03.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:03.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:03.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:03.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:03.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:03.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:03.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:03.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:03.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:03.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:03.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:03.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:03.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:03.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:03.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:03.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:03.611][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:03.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:03.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:03.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:03.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:03.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:03.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:03.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:03.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:03.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:03.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:03.621][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:03.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:03.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:03.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:03.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:03.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:03.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:03.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:03.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:03.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:03.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:03.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:03.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:03.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:03.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:03.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:03.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:03.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:03.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:03.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:03.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:03.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:03.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:03.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:03.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:03.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:03.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:03.643][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:03.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:03.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:03.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:03.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:03.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:03.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:03.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:03.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:03.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:03.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:03.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:03.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:03.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:03.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:03.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:03.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:03.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:03.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:03.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:03.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:03.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:03.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:03.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:03.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:03.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:03.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:03.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:03.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:03.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:03.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:03.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:03.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:03.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:03.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:03.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:03.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:03.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:03.675][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:03.676][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:03.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:03.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:03.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:03.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:03.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:03.683][private$loadEntries] Creating entries from ids [1]: "9442".
biodb.DEBUG[2022-10-15 08:05:03.683][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:03.685][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9442".
biodb.TRACE[2022-10-15 08:05:03.685][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:03.686][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:03.687][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:03.688][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:03.689][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:03.689][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:03.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:03.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:03.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:03.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:03.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:03.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:03.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:03.699][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.DEBUG[2022-10-15 08:05:03.701][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:03.701][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:03.702][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.TRACE[2022-10-15 08:05:04.247][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442).
biodb.DEBUG[2022-10-15 08:05:04.668][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:04.673][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.content"
biodb.TRACE[2022-10-15 08:05:04.681][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.request"
biodb.TRACE[2022-10-15 08:05:04.688][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9442.xml"
biodb.DEBUG[2022-10-15 08:05:04.691][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:04.702][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:04.703][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:04.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:04.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:04.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:04.709][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:04.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:04.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:04.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:04.713][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:04.714][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:04.714][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.715][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:04.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:04.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:04.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:04.728][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:04.728][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:04.729][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.730][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:04.731][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:04.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:04.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:04.735][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:04.736][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:04.736][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.737][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:04.738][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:04.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:04.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:04.742][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:04.743][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:04.744][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.744][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:04.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:04.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:04.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:04.749][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:04.750][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:04.751][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.752][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:04.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:04.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:04.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:04.757][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:04.758][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:04.758][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.759][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:04.760][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:04.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:04.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:04.764][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:04.765][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:04.766][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.766][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:04.767][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:04.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:04.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:04.771][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:04.772][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:04.773][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.773][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:04.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:04.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:04.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:04.779][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:04.779][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:04.780][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.781][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:04.782][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:04.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:04.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:04.786][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:04.787][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:04.788][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.788][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:04.789][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:04.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:04.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:04.794][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:04.794][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:04.795][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.796][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:04.797][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:04.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:04.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:04.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:04.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:04.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:04.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:04.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:04.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:04.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:04.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:04.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:04.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:04.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:04.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:04.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:04.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:04.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:04.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:04.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:04.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:04.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:04.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:04.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:04.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:04.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:04.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:04.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:04.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:04.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:04.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:04.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:04.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:04.831][self$createEntryFromContent] Accession numbers: 9442.
biodb.TRACE[2022-10-15 08:05:04.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:04.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:04.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:04.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:04.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:04.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:04.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:04.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:04.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:04.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:04.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:04.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:04.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:04.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:04.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:04.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:04.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:04.848][private$loadEntries] Creating entries from ids [1]: "34764".
biodb.DEBUG[2022-10-15 08:05:04.849][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:04.850][cch$loadFileContent] Trying to load 1 files from cache: [1]: "34764".
biodb.TRACE[2022-10-15 08:05:04.851][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:04.852][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:04.853][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:04.853][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:04.854][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:04.855][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:04.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:04.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:04.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:04.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:04.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:04.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:04.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:04.864][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.DEBUG[2022-10-15 08:05:04.866][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:04.867][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:04.868][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.TRACE[2022-10-15 08:05:05.274][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764).
biodb.DEBUG[2022-10-15 08:05:05.699][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:05.704][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.content"
biodb.TRACE[2022-10-15 08:05:05.712][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.request"
biodb.TRACE[2022-10-15 08:05:05.719][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34764.xml"
biodb.DEBUG[2022-10-15 08:05:05.721][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:05.732][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:05.733][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:05.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:05.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:05.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:05.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:05.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:05.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:05.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:05.743][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:05.743][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:05.744][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.745][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:05.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:05.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.756][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:05.757][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:05.758][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.758][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.759][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:05.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:05.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.764][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:05.764][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:05.765][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.766][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.767][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:05.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:05.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.771][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:05.772][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:05.772][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.773][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.774][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:05.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:05.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.778][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:05.779][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:05.780][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.780][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:05.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:05.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.785][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:05.786][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:05.787][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.787][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.788][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:05.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:05.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.793][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:05.793][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:05.794][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.795][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.795][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:05.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:05.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.800][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:05.801][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:05.801][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.802][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:05.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:05.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.807][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:05.808][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:05.809][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.809][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.810][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:05.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:05.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.815][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:05.815][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:05.816][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.817][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.818][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:05.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:05.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.822][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:05.823][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:05.824][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.824][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.825][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:05.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:05.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:05.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:05.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:05.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:05.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:05.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:05.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:05.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:05.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:05.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:05.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:05.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:05.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:05.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:05.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:05.860][self$createEntryFromContent] Accession numbers: 34764.
biodb.TRACE[2022-10-15 08:05:05.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:05.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:05.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:05.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:05.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:05.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:05.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:05.869][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:05:05.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:05.871][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:05.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:05.876][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:05.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:05.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:05.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:05.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.884][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:05.885][private$selectFields]
biodb.TRACE[2022-10-15 08:05:05.885][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:05.886][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:05.887][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:05.887][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.888][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.889][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.889][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.890][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.891][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.892][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.892][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.893][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:05.894][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:05.894][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.895][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.896][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.897][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.897][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:05.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.907][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2022-10-15 08:05:05.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:05.908][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:05.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:05.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:05.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:05.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:05.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:05.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.921][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:05.922][private$selectFields]
biodb.TRACE[2022-10-15 08:05:05.922][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:05.923][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:05.924][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:05.924][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.925][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.926][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.926][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.927][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.928][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.928][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.929][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.930][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:05.931][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:05.931][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.932][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.933][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.933][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.934][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:05.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.944][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-10-15 08:05:05.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:05.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:05.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:05.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:05.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:05.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:05.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:05.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.957][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:05.958][private$selectFields]
biodb.TRACE[2022-10-15 08:05:05.959][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:05.959][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:05.960][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:05.961][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.962][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.962][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.963][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.964][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.964][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.966][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.966][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:05.967][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:05.968][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.969][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.969][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.970][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.971][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:05.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:05.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:05.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:05.983][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2022-10-15 08:05:05.984][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:05:05.984][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:05:05.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:05.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:05.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:05.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:05.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:05.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:05.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:06.018][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:06.020][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:06.021][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:06.022][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-10-15 08:05:06.700][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-10-15 08:05:07.493][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:07.498][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.content"
biodb.TRACE[2022-10-15 08:05:07.506][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.request"
biodb.DEBUG[2022-10-15 08:05:07.512][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:07.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:07.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:07.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:07.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:07.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:07.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:07.520][private$loadEntries] Creating entries from ids [1]: "2535".
biodb.DEBUG[2022-10-15 08:05:07.521][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:07.522][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2535".
biodb.TRACE[2022-10-15 08:05:07.523][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:07.524][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:07.524][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:07.525][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:07.526][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:07.527][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:07.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:07.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:07.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:07.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:07.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:07.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:07.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:07.536][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.DEBUG[2022-10-15 08:05:07.538][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:07.539][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:07.540][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.TRACE[2022-10-15 08:05:07.964][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535).
biodb.DEBUG[2022-10-15 08:05:08.411][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:08.416][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.content"
biodb.TRACE[2022-10-15 08:05:08.424][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.request"
biodb.TRACE[2022-10-15 08:05:08.431][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2535.xml"
biodb.DEBUG[2022-10-15 08:05:08.434][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:08.444][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:08.445][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:08.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:08.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:08.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:08.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:08.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:08.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:08.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:08.455][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:08.456][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:08.457][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.457][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:08.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:08.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.463][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:08.464][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:08.465][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.465][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.466][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:08.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:08.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.479][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:08.480][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:08.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.481][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.482][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:08.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:08.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.487][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:08.487][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:08.488][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.489][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.490][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:08.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:08.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.494][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:08.495][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:08.496][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.496][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:08.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:08.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.502][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:08.502][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:08.503][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.504][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.505][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:08.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:08.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.509][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:08.510][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:08.511][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.511][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.512][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:08.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:08.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.517][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:08.518][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:08.518][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.519][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:08.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:08.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.524][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:08.525][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:08.526][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.527][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.527][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:08.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:08.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.532][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:08.533][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:08.533][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.534][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.535][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:08.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:08.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.540][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:08.540][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:08.541][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.542][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.542][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:08.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:08.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:08.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:08.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:08.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:08.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:08.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:08.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:08.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:08.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:08.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:08.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:08.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:08.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:08.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:08.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:08.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:08.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:08.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:08.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:08.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:08.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:08.578][self$createEntryFromContent] Accession numbers: 2535.
biodb.TRACE[2022-10-15 08:05:08.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:08.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:08.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:08.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:08.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:08.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:08.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:08.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:08.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:08.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:08.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:08.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:08.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:08.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:08.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:08.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:08.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:08.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:08.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:08.600][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:08.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:08.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:08.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:08.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:08.604][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:08.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:08.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:08.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:08.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:08.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:08.611][private$loadEntries] Creating entries from ids [1]: "5525".
biodb.DEBUG[2022-10-15 08:05:08.612][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:08.613][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5525".
biodb.TRACE[2022-10-15 08:05:08.614][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:08.614][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:08.615][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:08.616][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:08.617][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:08.618][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:08.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:08.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:08.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:08.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:08.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:08.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:08.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:08.627][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.DEBUG[2022-10-15 08:05:08.629][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:08.629][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:08.630][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.TRACE[2022-10-15 08:05:09.041][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525).
biodb.DEBUG[2022-10-15 08:05:09.471][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:09.476][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.content"
biodb.TRACE[2022-10-15 08:05:09.484][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.request"
biodb.TRACE[2022-10-15 08:05:09.491][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5525.xml"
biodb.DEBUG[2022-10-15 08:05:09.493][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:09.504][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:09.505][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:09.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:09.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:09.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:09.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:09.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:09.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:09.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:09.521][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:09.521][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:09.522][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.523][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:09.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:09.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.528][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:09.529][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:09.530][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.530][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.531][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:09.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:09.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.536][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:09.537][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:09.537][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.538][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.539][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:09.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:09.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.543][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:09.544][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:09.545][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.545][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.546][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:09.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:09.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.550][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:09.551][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:09.552][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.552][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.553][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:09.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:09.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.557][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:09.558][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:09.559][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.559][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.560][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:09.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:09.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.565][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:09.565][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:09.566][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.567][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.568][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:09.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:09.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.572][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:09.573][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:09.573][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.574][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.575][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:09.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:09.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.579][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:09.580][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:09.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.581][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.582][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:09.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:09.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.587][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:09.587][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:09.588][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.589][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.589][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:09.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:09.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.594][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:09.595][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:09.595][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.596][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.597][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:09.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:09.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:09.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:09.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:09.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:09.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:09.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:09.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:09.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:09.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:09.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:09.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:09.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:09.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:09.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:09.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:09.631][self$createEntryFromContent] Accession numbers: 5525.
biodb.TRACE[2022-10-15 08:05:09.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:09.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:09.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:09.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:09.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:09.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:09.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:09.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:09.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:09.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:09.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:09.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:09.647][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:09.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:09.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:09.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:09.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:09.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:09.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:09.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:09.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:09.657][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:05:09.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:09.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:09.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:09.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:09.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:09.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:09.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:09.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.671][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:09.672][private$selectFields]
biodb.TRACE[2022-10-15 08:05:09.673][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:09.674][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:09.674][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:09.675][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.676][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.676][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.677][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.678][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.679][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.679][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.680][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.681][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:09.681][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:09.682][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.683][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.684][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.684][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.685][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:09.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.695][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2022-10-15 08:05:09.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:09.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:09.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:09.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:09.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:09.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:09.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:09.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.709][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:09.710][private$selectFields]
biodb.TRACE[2022-10-15 08:05:09.710][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:09.711][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:09.712][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:09.712][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.713][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.714][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.715][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.715][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.716][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.717][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.717][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.718][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:09.719][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:09.720][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.720][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.721][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.722][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.723][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:09.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.732][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-10-15 08:05:09.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:09.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:09.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:09.741][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:09.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:09.743][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:09.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:09.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.750][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:09.751][private$selectFields]
biodb.TRACE[2022-10-15 08:05:09.751][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:09.752][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:09.753][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:09.753][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.754][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.755][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.755][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.756][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.757][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.758][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.758][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.759][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:09.760][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:09.760][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.761][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.762][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.762][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.763][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:09.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:09.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:09.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:09.773][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-10-15 08:05:09.773][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:05:09.774][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:05:09.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:09.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:09.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:09.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:09.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:09.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:09.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:09.811][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:09.813][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:09.814][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:09.815][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-10-15 08:05:10.317][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-10-15 08:05:10.760][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:10.765][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.content"
biodb.TRACE[2022-10-15 08:05:10.772][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.request"
biodb.DEBUG[2022-10-15 08:05:10.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:10.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:10.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:10.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:10.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:10.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:10.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:10.784][private$loadEntries] Creating entries from ids [1]: "31303".
biodb.DEBUG[2022-10-15 08:05:10.785][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:10.786][cch$loadFileContent] Trying to load 1 files from cache: [1]: "31303".
biodb.TRACE[2022-10-15 08:05:10.787][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:10.788][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:10.788][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:10.789][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:10.790][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:10.791][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:10.793][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:10.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:10.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:10.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:10.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:10.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:10.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:10.800][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.DEBUG[2022-10-15 08:05:10.802][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:10.803][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:10.804][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.TRACE[2022-10-15 08:05:11.206][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303).
biodb.DEBUG[2022-10-15 08:05:11.627][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:11.633][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.content"
biodb.TRACE[2022-10-15 08:05:11.643][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.request"
biodb.TRACE[2022-10-15 08:05:11.651][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/31303.xml"
biodb.DEBUG[2022-10-15 08:05:11.654][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:11.666][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:11.667][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:11.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:11.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:11.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:11.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:11.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:11.683][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:11.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:11.686][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:11.686][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:11.687][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:11.688][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:11.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:11.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:11.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:11.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:11.694][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:11.695][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:11.695][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:11.696][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:11.697][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:11.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:11.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:11.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:11.702][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:11.703][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:11.704][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:11.704][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:11.705][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:11.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:11.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:11.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:11.710][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:11.711][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:11.712][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:11.713][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:11.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:11.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:11.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:11.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:11.718][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:11.719][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:11.720][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:11.720][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:11.721][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:11.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:11.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:11.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:11.726][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:11.727][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:11.728][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:11.728][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:11.729][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:11.730][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:11.731][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:11.731][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:11.732][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:11.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:11.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:11.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:11.737][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:11.738][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:11.739][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:11.739][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:11.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:11.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:11.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:11.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:11.745][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:11.746][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:11.747][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:11.747][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:11.748][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:11.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:11.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:11.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:11.753][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:11.754][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:11.755][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:11.756][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:11.756][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:11.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:11.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:11.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:11.761][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:11.762][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:11.763][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:11.763][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:11.764][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:11.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:11.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:11.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:11.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:11.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:11.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:11.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:11.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:11.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:11.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:11.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:11.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:11.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:11.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:11.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:11.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:11.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:11.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:11.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:11.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:11.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:11.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:11.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:11.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:11.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:11.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:11.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:11.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:11.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:11.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:11.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:11.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:11.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:11.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:11.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:11.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:11.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:11.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:11.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:11.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:11.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:11.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:11.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:11.802][self$createEntryFromContent] Accession numbers: 31303.
biodb.TRACE[2022-10-15 08:05:11.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:11.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:11.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:11.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:11.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:11.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:11.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:11.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:11.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:11.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:11.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:11.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:11.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:11.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:11.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:11.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:11.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:11.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:11.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:11.820][private$loadEntries] Creating entries from ids [1]: "37118".
biodb.DEBUG[2022-10-15 08:05:11.820][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:11.822][cch$loadFileContent] Trying to load 1 files from cache: [1]: "37118".
biodb.TRACE[2022-10-15 08:05:11.822][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:11.823][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:11.824][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:11.825][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:11.826][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:11.826][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:11.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:11.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:11.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:11.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:11.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:11.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:11.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:11.836][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.DEBUG[2022-10-15 08:05:11.838][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:11.839][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:11.840][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.TRACE[2022-10-15 08:05:12.247][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118).
biodb.DEBUG[2022-10-15 08:05:12.684][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:12.689][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.content"
biodb.TRACE[2022-10-15 08:05:12.696][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.request"
biodb.TRACE[2022-10-15 08:05:12.703][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37118.xml"
biodb.DEBUG[2022-10-15 08:05:12.706][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:12.716][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:12.723][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:12.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:12.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:12.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:12.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:12.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:12.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:12.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:12.732][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:12.733][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:12.734][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:12.734][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:12.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:12.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:12.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:12.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:12.740][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:12.741][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:12.741][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:12.742][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:12.743][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:12.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:12.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:12.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:12.747][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:12.748][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:12.748][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:12.749][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:12.750][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:12.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:12.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:12.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:12.754][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:12.755][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:12.756][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:12.756][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:12.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:12.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:12.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:12.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:12.762][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:12.762][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:12.763][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:12.764][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:12.764][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:12.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:12.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:12.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:12.769][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:12.770][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:12.770][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:12.771][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:12.772][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:12.773][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:12.773][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:12.774][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:12.775][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:12.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:12.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:12.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:12.779][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:12.780][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:12.781][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:12.781][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:12.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:12.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:12.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:12.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:12.787][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:12.787][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:12.788][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:12.789][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:12.790][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:12.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:12.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:12.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:12.794][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:12.795][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:12.796][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:12.796][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:12.797][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:12.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:12.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:12.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:12.801][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:12.802][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:12.803][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:12.803][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:12.804][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:12.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:12.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:12.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:12.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:12.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:12.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:12.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:12.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:12.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:12.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:12.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:12.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:12.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:12.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:12.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:12.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:12.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:12.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:12.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:12.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:12.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:12.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:12.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:12.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:12.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:12.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:12.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:12.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:12.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:12.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:12.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:12.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:12.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:12.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:12.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:12.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:12.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:12.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:12.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:12.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:12.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:12.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:12.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:12.839][self$createEntryFromContent] Accession numbers: 37118.
biodb.TRACE[2022-10-15 08:05:12.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:12.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:12.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:12.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:12.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:12.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:12.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:12.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:12.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:12.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:12.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:12.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:12.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:12.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:12.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:12.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:12.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:12.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:12.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:12.855][private$loadEntries] Creating entries from ids [1]: "39424".
biodb.DEBUG[2022-10-15 08:05:12.856][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:12.857][cch$loadFileContent] Trying to load 1 files from cache: [1]: "39424".
biodb.TRACE[2022-10-15 08:05:12.858][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:12.859][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:12.860][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:12.860][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:12.861][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:12.862][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:12.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:12.864][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:12.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:12.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:12.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:12.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:12.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:12.871][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.DEBUG[2022-10-15 08:05:12.873][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:12.874][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:12.875][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.TRACE[2022-10-15 08:05:13.282][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424).
biodb.DEBUG[2022-10-15 08:05:13.700][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:13.704][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.content"
biodb.TRACE[2022-10-15 08:05:13.712][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.request"
biodb.TRACE[2022-10-15 08:05:13.719][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/39424.xml"
biodb.DEBUG[2022-10-15 08:05:13.722][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:13.739][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:13.740][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:13.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:13.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:13.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:13.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:13.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:13.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:13.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:13.750][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:13.750][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:13.751][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:13.752][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:13.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:13.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:13.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:13.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:13.757][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:13.758][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:13.759][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:13.760][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:13.760][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:13.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:13.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:13.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:13.765][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:13.766][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:13.767][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:13.767][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:13.768][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:13.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:13.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:13.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:13.773][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:13.773][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:13.774][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:13.775][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:13.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:13.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:13.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:13.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:13.780][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:13.781][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:13.782][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:13.782][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:13.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:13.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:13.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:13.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:13.788][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:13.789][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:13.789][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:13.790][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:13.791][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:13.792][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:13.793][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:13.793][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:13.794][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:13.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:13.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:13.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:13.799][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:13.800][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:13.800][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:13.801][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:13.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:13.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:13.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:13.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:13.806][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:13.807][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:13.808][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:13.808][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:13.809][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:13.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:13.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:13.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:13.814][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:13.815][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:13.815][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:13.816][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:13.817][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:13.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:13.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:13.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:13.821][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:13.822][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:13.823][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:13.824][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:13.825][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:13.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:13.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:13.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:13.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:13.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:13.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:13.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:13.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:13.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:13.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:13.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:13.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:13.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:13.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:13.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:13.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:13.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:13.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:13.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:13.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:13.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:13.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:13.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:13.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:13.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:13.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:13.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:13.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:13.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:13.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:13.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:13.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:13.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:13.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:13.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:13.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:13.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:13.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:13.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:13.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:13.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:13.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:13.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:13.860][self$createEntryFromContent] Accession numbers: 39424.
biodb.TRACE[2022-10-15 08:05:13.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:13.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:13.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:13.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:13.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:13.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:13.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:13.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:13.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:13.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:13.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:13.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:13.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:13.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:13.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:13.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:13.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:13.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:13.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:13.876][private$loadEntries] Creating entries from ids [1]: "81767".
biodb.DEBUG[2022-10-15 08:05:13.877][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:13.878][cch$loadFileContent] Trying to load 1 files from cache: [1]: "81767".
biodb.TRACE[2022-10-15 08:05:13.879][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:13.880][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:13.880][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:13.881][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:13.882][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:13.883][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:13.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:13.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:13.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:13.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:13.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:13.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:13.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:13.892][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.DEBUG[2022-10-15 08:05:13.894][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:13.894][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:13.895][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.TRACE[2022-10-15 08:05:14.295][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767).
biodb.DEBUG[2022-10-15 08:05:14.716][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:14.721][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.content"
biodb.TRACE[2022-10-15 08:05:14.728][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.request"
biodb.TRACE[2022-10-15 08:05:14.735][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/81767.xml"
biodb.DEBUG[2022-10-15 08:05:14.738][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:14.754][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:14.755][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:14.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:14.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:14.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:14.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:14.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:14.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:14.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:14.765][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:14.765][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:14.766][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.767][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:14.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:14.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.772][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:14.773][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:14.774][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.774][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.775][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:14.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:14.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.780][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:14.780][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:14.781][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.782][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.783][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:14.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:14.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.787][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:14.788][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:14.788][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.789][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:14.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:14.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.794][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:14.795][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:14.796][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.797][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:14.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:14.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.802][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:14.803][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:14.803][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.804][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.805][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:14.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:14.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.809][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:14.810][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:14.811][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.812][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.812][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:14.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:14.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.817][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:14.818][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:14.818][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.819][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:14.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:14.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.824][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:14.825][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:14.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.826][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.827][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:14.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:14.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.832][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:14.833][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:14.833][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.834][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.835][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:14.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:14.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.840][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:14.840][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:14.841][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.842][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.843][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:14.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:14.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:14.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:14.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:14.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:14.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:14.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:14.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:14.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:14.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:14.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:14.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:14.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:14.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:14.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:14.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:14.878][self$createEntryFromContent] Accession numbers: 81767.
biodb.TRACE[2022-10-15 08:05:14.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:14.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:14.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:14.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:14.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:14.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:14.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:14.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:14.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:14.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:14.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:14.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:14.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:14.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:14.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:14.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:14.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:14.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:14.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:14.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:14.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:14.903][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:05:14.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:14.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:14.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:14.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:14.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:14.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:14.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:14.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.918][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:14.918][private$selectFields]
biodb.TRACE[2022-10-15 08:05:14.919][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:14.920][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:14.920][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:14.921][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.922][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.923][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.923][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.924][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.925][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.925][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.926][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.927][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:14.927][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:14.928][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.929][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.930][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.930][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.931][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:14.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.940][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2022-10-15 08:05:14.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:14.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:14.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:14.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:14.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:14.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:14.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:14.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.954][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:14.955][private$selectFields]
biodb.TRACE[2022-10-15 08:05:14.955][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:14.956][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:14.957][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:14.958][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.958][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.959][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.960][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.960][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.961][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.962][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.963][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.963][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:14.964][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:14.965][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.965][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.966][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.967][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.967][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:14.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.980][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2022-10-15 08:05:14.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:14.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:14.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:14.986][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:14.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:14.987][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:14.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:14.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:14.994][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:14.994][private$selectFields]
biodb.TRACE[2022-10-15 08:05:14.995][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:14.996][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:14.996][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:14.997][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.998][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:14.999][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:14.999][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.000][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.001][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.001][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.002][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.003][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.003][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.004][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.005][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.005][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.006][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.007][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:15.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.016][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2022-10-15 08:05:15.017][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:05:15.017][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:05:15.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:15.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:15.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:15.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:15.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:15.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:15.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:15.068][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:15.070][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:15.071][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2022-10-15 08:05:15.072][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:15.073][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2022-10-15 08:05:15.075][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:15.077][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:15.077][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2022-10-15 08:05:15.078][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:15.079][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2022-10-15 08:05:15.081][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:15.081][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:15.082][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:15.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:15.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:15.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:15.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:15.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:15.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:15.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:15.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:15.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:15.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:15.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:15.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:15.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:15.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:15.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:15.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:15.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:15.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:15.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:15.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:15.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:15.128][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:05:15.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:15.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:15.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:15.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:15.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:15.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:15.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:15.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.142][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.142][private$selectFields]
biodb.TRACE[2022-10-15 08:05:15.143][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:15.144][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:15.145][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.145][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.146][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.147][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.147][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.148][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.149][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.149][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.150][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.151][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.152][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.152][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.153][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.154][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.154][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.155][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:15.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.164][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-10-15 08:05:15.165][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:15.166][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:15.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:15.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:15.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:15.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:15.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:15.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.178][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.179][private$selectFields]
biodb.TRACE[2022-10-15 08:05:15.180][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:15.180][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:15.181][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.182][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.183][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.183][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.184][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.185][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.185][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.189][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.190][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.191][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.191][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.192][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.193][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.193][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.194][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.195][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:15.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.204][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-10-15 08:05:15.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:15.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:15.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:15.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:15.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:15.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:15.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:15.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.217][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.218][private$selectFields]
biodb.TRACE[2022-10-15 08:05:15.219][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:15.219][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:15.220][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.221][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.222][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.222][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.223][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.224][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.224][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.225][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.226][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.226][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.227][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.228][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.228][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.229][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.230][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.230][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:15.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.240][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-10-15 08:05:15.240][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:05:15.241][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:05:15.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:15.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:15.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:15.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:15.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:15.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:15.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:15.276][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:15.278][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:15.279][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2022-10-15 08:05:15.280][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:15.281][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2022-10-15 08:05:15.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:15.283][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:15.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:15.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:15.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:15.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:15.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:15.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:15.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:15.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:15.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:15.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:15.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:15.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:15.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:15.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:15.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:15.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:15.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:15.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:15.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:15.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:15.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:15.322][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:15.331][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:05:15.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:15.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:15.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:15.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:15.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:15.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:15.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:15.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.345][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.346][private$selectFields]
biodb.TRACE[2022-10-15 08:05:15.346][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:15.347][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:15.348][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.349][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.349][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.350][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.351][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.351][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.352][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.353][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.354][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.354][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.355][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.356][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.356][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.358][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.358][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:15.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.368][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-10-15 08:05:15.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:15.369][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:15.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:15.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:15.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:15.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:15.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:15.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.382][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.382][private$selectFields]
biodb.TRACE[2022-10-15 08:05:15.383][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:15.384][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:15.384][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.385][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.386][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.387][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.387][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.388][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.389][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.389][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.390][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.391][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.392][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.392][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.393][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.394][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.394][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.395][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:15.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.408][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2022-10-15 08:05:15.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:15.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:15.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:15.414][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:15.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:15.415][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:15.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:15.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.422][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.423][private$selectFields]
biodb.TRACE[2022-10-15 08:05:15.424][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:15.424][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:15.425][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.426][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.427][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.427][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.428][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.429][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.429][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.430][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.431][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.431][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.432][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.433][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.434][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.434][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.435][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.436][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:15.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.445][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2022-10-15 08:05:15.446][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:05:15.447][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:05:15.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:15.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:15.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:15.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:15.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:15.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:15.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:15.483][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:15.485][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:15.486][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2022-10-15 08:05:15.487][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:15.488][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2022-10-15 08:05:15.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:15.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:15.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:15.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:15.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:15.496][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:15.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:15.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:15.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:15.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:15.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:15.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:15.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:15.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:15.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:15.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:15.524][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:15.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:15.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:15.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:15.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:15.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:15.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:15.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:15.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:15.540][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:05:15.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:15.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:15.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:15.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:15.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:15.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:15.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:15.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.555][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.556][private$selectFields]
biodb.TRACE[2022-10-15 08:05:15.556][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:15.557][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:15.558][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.558][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.559][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.560][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.561][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.561][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.562][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.563][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.563][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.564][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.565][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.566][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.566][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.567][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.568][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.568][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:15.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.578][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-10-15 08:05:15.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:15.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:15.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:15.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:15.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:15.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:15.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:15.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.592][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.593][private$selectFields]
biodb.TRACE[2022-10-15 08:05:15.594][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:15.595][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:15.595][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.596][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.597][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.597][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.598][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.599][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.600][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.600][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.601][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.602][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.602][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.603][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.604][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.605][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.606][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:15.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.616][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2022-10-15 08:05:15.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:15.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:15.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:15.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:15.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:15.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:15.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:15.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.634][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.634][private$selectFields]
biodb.TRACE[2022-10-15 08:05:15.635][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:15.636][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:15.637][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.637][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.638][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.639][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.639][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.640][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.641][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.642][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.642][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.643][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.644][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:15.644][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.645][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.646][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.646][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.647][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:15.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:15.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:15.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:15.657][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2022-10-15 08:05:15.657][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:05:15.658][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:05:15.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:15.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:15.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:15.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:15.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:15.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:15.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:15.711][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:15.713][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:15.714][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:15.715][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-10-15 08:05:16.117][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-10-15 08:05:16.540][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:16.545][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.content"
biodb.TRACE[2022-10-15 08:05:16.553][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.request"
biodb.DEBUG[2022-10-15 08:05:16.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:16.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:16.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:16.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:16.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:16.564][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:16.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:16.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:16.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:16.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:16.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:16.568][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:16.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:16.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:16.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:16.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:16.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:16.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:16.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:16.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:16.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:16.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:16.579][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:16.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:16.580][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:16.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:16.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:16.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:16.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:16.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:16.585][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:16.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:16.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:16.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:16.588][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:16.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:16.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:16.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:16.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:16.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:16.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:16.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:16.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:16.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:16.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:16.598][private$loadEntries] Creating entries from ids [1]: "17813".
biodb.DEBUG[2022-10-15 08:05:16.599][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:16.600][cch$loadFileContent] Trying to load 1 files from cache: [1]: "17813".
biodb.TRACE[2022-10-15 08:05:16.601][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:16.602][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:16.603][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:16.603][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:16.604][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:16.605][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:16.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:16.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:16.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:16.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:16.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:16.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:16.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:16.615][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.DEBUG[2022-10-15 08:05:16.617][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:16.617][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:16.618][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.TRACE[2022-10-15 08:05:17.021][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813).
biodb.DEBUG[2022-10-15 08:05:17.458][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:17.462][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.content"
biodb.TRACE[2022-10-15 08:05:17.470][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.request"
biodb.TRACE[2022-10-15 08:05:17.476][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/17813.xml"
biodb.DEBUG[2022-10-15 08:05:17.479][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:17.489][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:17.490][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:17.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:17.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:17.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:17.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:17.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:17.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:17.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:17.499][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:17.500][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:17.501][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.501][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:17.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:17.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:17.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:17.506][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:17.507][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:17.508][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.508][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:17.509][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:17.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:17.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:17.514][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:17.515][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:17.515][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.516][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:17.517][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:17.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:17.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:17.522][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:17.522][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:17.523][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.524][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:17.525][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:17.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:17.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:17.529][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:17.530][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:17.530][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.531][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:17.532][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:17.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:17.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:17.537][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:17.537][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:17.538][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.539][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:17.540][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:17.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:17.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:17.544][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:17.545][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:17.546][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.546][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:17.547][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:17.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:17.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:17.552][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:17.552][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:17.553][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.554][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:17.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:17.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:17.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:17.559][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:17.560][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:17.560][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.561][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:17.562][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:17.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:17.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:17.567][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:17.567][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:17.568][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.569][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:17.570][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:17.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:17.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:17.574][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:17.575][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:17.576][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.576][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:17.577][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:17.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:17.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:17.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:17.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:17.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:17.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:17.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:17.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:17.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:17.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:17.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:17.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:17.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:17.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:17.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:17.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:17.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:17.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:17.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:17.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:17.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:17.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:17.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:17.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:17.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:17.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:17.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:17.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:17.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:17.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:17.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:17.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:17.612][self$createEntryFromContent] Accession numbers: 17813.
biodb.TRACE[2022-10-15 08:05:17.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:17.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:17.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:17.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:17.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:17.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:17.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:17.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:17.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:17.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:17.622][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:17.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:17.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:17.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:17.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:17.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:17.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:17.630][private$loadEntries] Creating entries from ids [1]: "30109".
biodb.DEBUG[2022-10-15 08:05:17.630][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:17.632][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30109".
biodb.TRACE[2022-10-15 08:05:17.632][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:17.633][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:17.634][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:17.635][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:17.636][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:17.636][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:17.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:17.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:17.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:17.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:17.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:17.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:17.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:17.646][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.DEBUG[2022-10-15 08:05:17.648][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:17.648][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:17.649][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.TRACE[2022-10-15 08:05:18.055][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109).
biodb.DEBUG[2022-10-15 08:05:18.483][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:18.488][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.content"
biodb.TRACE[2022-10-15 08:05:18.495][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.request"
biodb.TRACE[2022-10-15 08:05:18.502][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30109.xml"
biodb.DEBUG[2022-10-15 08:05:18.505][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:18.515][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:18.516][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:18.517][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:18.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:18.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:18.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:18.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:18.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:18.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:18.525][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:18.526][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:18.526][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.527][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:18.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:18.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:18.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:18.532][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:18.533][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:18.534][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.534][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:18.535][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:18.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:18.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:18.540][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:18.541][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:18.541][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.542][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:18.543][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:18.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:18.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:18.547][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:18.548][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:18.549][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.549][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:18.550][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:18.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:18.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:18.555][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:18.555][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:18.556][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.557][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:18.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:18.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:18.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:18.562][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:18.563][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:18.564][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.564][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:18.565][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:18.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:18.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:18.570][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:18.571][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:18.571][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.572][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:18.573][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:18.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:18.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:18.577][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:18.578][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:18.579][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.580][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:18.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:18.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:18.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:18.585][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:18.586][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:18.587][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.587][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:18.588][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:18.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:18.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:18.593][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:18.594][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:18.594][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.595][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:18.596][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:18.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:18.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:18.600][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:18.601][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:18.602][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.602][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:18.603][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:18.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:18.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:18.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:18.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:18.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:18.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:18.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:18.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:18.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:18.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:18.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:18.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:18.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:18.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:18.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:18.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:18.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:18.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:18.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:18.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:18.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:18.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:18.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:18.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:18.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:18.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:18.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:18.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:18.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:18.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:18.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:18.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:18.638][self$createEntryFromContent] Accession numbers: 30109.
biodb.TRACE[2022-10-15 08:05:18.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:18.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:18.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:18.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:18.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:18.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:18.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:18.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:18.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:18.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:18.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:18.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:18.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:18.652][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:18.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:18.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:18.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:18.655][private$loadEntries] Creating entries from ids [1]: "33275".
biodb.DEBUG[2022-10-15 08:05:18.656][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:18.657][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33275".
biodb.TRACE[2022-10-15 08:05:18.658][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:18.659][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:18.660][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:18.660][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:18.661][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:18.662][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:18.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:18.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:18.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:18.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:18.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:18.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:18.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:18.672][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.DEBUG[2022-10-15 08:05:18.673][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:18.674][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:18.675][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.TRACE[2022-10-15 08:05:19.080][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275).
biodb.DEBUG[2022-10-15 08:05:19.519][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:19.523][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.content"
biodb.TRACE[2022-10-15 08:05:19.531][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.request"
biodb.TRACE[2022-10-15 08:05:19.537][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33275.xml"
biodb.DEBUG[2022-10-15 08:05:19.540][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:19.550][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:19.551][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:19.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:19.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:19.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:19.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:19.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:19.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:19.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:19.561][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:19.561][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:19.562][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.563][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:19.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:19.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:19.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:19.568][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:19.569][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:19.569][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.570][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:19.571][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:19.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:19.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:19.575][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:19.576][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:19.577][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.577][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:19.578][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:19.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:19.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:19.583][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:19.583][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:19.584][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.585][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:19.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:19.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:19.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:19.590][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:19.591][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:19.591][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.592][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:19.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:19.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:19.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:19.598][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:19.598][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:19.599][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.600][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:19.601][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:19.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:19.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:19.605][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:19.606][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:19.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.607][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:19.608][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:19.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:19.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:19.613][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:19.613][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:19.614][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.615][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:19.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:19.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:19.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:19.620][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:19.621][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:19.621][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.622][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:19.623][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:19.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:19.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:19.628][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:19.628][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:19.629][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.630][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:19.631][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:19.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:19.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:19.635][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:19.636][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:19.637][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.637][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:19.638][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:19.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:19.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:19.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:19.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:19.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:19.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:19.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:19.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:19.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:19.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:19.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:19.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:19.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:19.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:19.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:19.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:19.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:19.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:19.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:19.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:19.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:19.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:19.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:19.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:19.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:19.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:19.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:19.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:19.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:19.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:19.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:19.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:19.674][self$createEntryFromContent] Accession numbers: 33275.
biodb.TRACE[2022-10-15 08:05:19.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:19.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:19.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:19.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:19.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:19.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:19.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:19.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:19.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:19.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:19.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:19.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:19.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:19.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:19.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:19.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:19.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:19.691][private$loadEntries] Creating entries from ids [1]: "33277".
biodb.DEBUG[2022-10-15 08:05:19.692][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:19.693][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33277".
biodb.TRACE[2022-10-15 08:05:19.694][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:19.694][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:19.695][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:19.696][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:19.697][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:19.697][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:19.699][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:19.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:19.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:19.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:19.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:19.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:19.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:19.707][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.DEBUG[2022-10-15 08:05:19.709][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:19.710][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:19.711][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.TRACE[2022-10-15 08:05:20.121][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277).
biodb.DEBUG[2022-10-15 08:05:20.629][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:20.634][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.content"
biodb.TRACE[2022-10-15 08:05:20.642][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.request"
biodb.TRACE[2022-10-15 08:05:20.649][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33277.xml"
biodb.DEBUG[2022-10-15 08:05:20.652][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:20.663][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:20.664][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:20.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:20.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:20.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:20.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:20.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:20.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:20.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:20.674][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:20.675][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:20.676][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.676][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:20.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:20.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:20.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:20.682][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:20.683][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:20.683][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.684][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:20.685][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:20.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:20.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:20.690][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:20.691][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:20.691][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.692][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:20.693][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:20.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:20.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:20.698][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:20.698][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:20.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.700][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:20.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:20.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:20.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:20.706][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:20.707][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:20.707][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.708][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:20.709][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:20.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:20.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:20.714][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:20.714][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:20.715][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.716][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:20.717][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:20.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:20.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:20.721][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:20.722][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:20.723][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.724][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:20.724][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:20.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:20.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:20.729][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:20.730][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:20.731][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.731][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:20.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:20.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:20.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:20.737][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:20.738][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:20.739][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.739][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:20.740][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:20.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:20.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:20.745][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:20.746][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:20.747][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.747][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:20.748][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:20.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:20.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:20.753][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:20.754][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:20.754][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.755][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:20.756][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:20.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:20.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:20.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:20.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:20.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:20.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:20.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:20.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:20.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:20.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:20.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:20.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:20.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:20.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:20.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:20.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:20.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:20.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:20.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:20.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:20.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:20.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:20.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:20.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:20.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:20.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:20.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:20.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:20.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:20.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:20.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:20.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:20.792][self$createEntryFromContent] Accession numbers: 33277.
biodb.TRACE[2022-10-15 08:05:20.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:20.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:20.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:20.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:20.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:20.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:20.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:20.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:20.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:20.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:20.801][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:20.802][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:20.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:20.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:20.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:20.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:20.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:20.809][private$loadEntries] Creating entries from ids [1]: "52421".
biodb.DEBUG[2022-10-15 08:05:20.810][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:20.811][cch$loadFileContent] Trying to load 1 files from cache: [1]: "52421".
biodb.TRACE[2022-10-15 08:05:20.812][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:20.812][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:20.813][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:20.814][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:20.815][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:20.815][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:20.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:20.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:20.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:20.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:20.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:20.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:20.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:20.825][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.DEBUG[2022-10-15 08:05:20.827][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:20.828][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:20.829][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.TRACE[2022-10-15 08:05:21.242][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421).
biodb.DEBUG[2022-10-15 08:05:21.663][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:21.667][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.content"
biodb.TRACE[2022-10-15 08:05:21.675][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.request"
biodb.TRACE[2022-10-15 08:05:21.681][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52421.xml"
biodb.DEBUG[2022-10-15 08:05:21.684][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:21.694][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:21.695][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:21.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:21.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:21.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:21.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:21.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:21.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:21.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:21.705][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:21.706][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:21.706][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.707][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:21.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:21.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.713][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:21.713][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:21.714][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.715][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.716][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:21.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:21.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.720][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:21.721][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:21.722][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.722][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.723][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:21.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:21.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.728][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:21.729][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:21.729][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.730][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:21.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:21.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.736][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:21.736][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:21.737][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.738][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.739][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:21.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:21.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.743][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:21.744][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:21.745][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.745][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.746][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:21.747][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:21.748][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.748][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.749][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:21.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:21.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.754][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:21.754][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:21.755][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.756][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:21.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:21.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.761][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:21.762][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:21.763][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.764][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.765][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:21.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:21.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.769][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:21.770][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:21.771][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.771][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.772][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:21.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:21.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.777][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:21.778][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:21.778][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.779][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.780][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:21.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:21.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:21.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:21.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:21.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:21.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:21.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:21.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:21.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:21.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:21.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:21.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:21.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:21.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:21.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:21.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:21.816][self$createEntryFromContent] Accession numbers: 52421.
biodb.TRACE[2022-10-15 08:05:21.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:21.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:21.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:21.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:21.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:21.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:21.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:21.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:21.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:21.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:21.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:21.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:21.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:21.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:21.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:21.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:21.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:21.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:21.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:21.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:21.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:21.842][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:05:21.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:21.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:21.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:21.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:21.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:21.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:21.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:21.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.864][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:21.865][private$selectFields]
biodb.TRACE[2022-10-15 08:05:21.865][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:21.866][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:21.867][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:21.868][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.869][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.869][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.870][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.871][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.872][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.874][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.875][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.877][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:21.878][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:21.879][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.879][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.880][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.881][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.882][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:21.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.886][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.892][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-10-15 08:05:21.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:21.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:21.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:21.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:21.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:21.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:21.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:21.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.908][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:21.908][private$selectFields]
biodb.TRACE[2022-10-15 08:05:21.909][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:21.910][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:21.911][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:21.911][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.912][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.913][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.914][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.914][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.915][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.916][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.917][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.918][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:21.918][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:21.919][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.920][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.921][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.922][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.922][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:21.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.933][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-10-15 08:05:21.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:21.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:21.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:21.939][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:21.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:21.940][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:21.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:21.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.948][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:21.949][private$selectFields]
biodb.TRACE[2022-10-15 08:05:21.949][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:21.950][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:21.951][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:21.952][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.952][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.953][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.954][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.955][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.956][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.956][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.957][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.958][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:21.959][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:21.959][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.960][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.961][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.961][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.962][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:21.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:21.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:21.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:21.973][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-10-15 08:05:21.974][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:05:21.975][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:05:21.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:21.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:21.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:21.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:21.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:21.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:21.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:22.015][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:22.018][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:22.019][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:22.020][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-10-15 08:05:22.442][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-10-15 08:05:23.237][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:23.243][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.content"
biodb.TRACE[2022-10-15 08:05:23.251][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.request"
biodb.DEBUG[2022-10-15 08:05:23.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:23.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:23.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:23.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:23.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:23.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:23.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:23.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:23.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:23.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:23.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:23.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:23.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:23.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:23.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:23.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:23.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:23.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:23.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:23.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:23.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:23.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:23.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:23.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:23.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:23.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:23.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:23.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:23.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:23.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:23.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:23.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:23.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:23.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:23.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:23.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:23.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:23.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:23.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:23.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:23.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:23.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:23.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:23.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:23.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:23.305][private$loadEntries] Creating entries from ids [1]: "65567".
biodb.DEBUG[2022-10-15 08:05:23.305][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:23.306][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65567".
biodb.TRACE[2022-10-15 08:05:23.307][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:23.308][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:23.309][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:23.310][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:23.310][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:23.311][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:23.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:23.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:23.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:23.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:23.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:23.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:23.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:23.320][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.DEBUG[2022-10-15 08:05:23.322][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:23.323][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:23.324][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.TRACE[2022-10-15 08:05:23.759][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567).
biodb.DEBUG[2022-10-15 08:05:24.179][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:24.184][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.content"
biodb.TRACE[2022-10-15 08:05:24.192][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.request"
biodb.TRACE[2022-10-15 08:05:24.199][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65567.xml"
biodb.DEBUG[2022-10-15 08:05:24.202][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:24.212][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:24.213][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:24.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:24.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:24.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:24.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:24.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:24.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:24.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:24.223][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:24.224][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:24.225][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:24.225][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:24.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:24.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:24.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:24.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:24.231][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:24.232][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:24.233][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:24.233][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:24.234][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:24.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:24.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:24.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:24.239][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:24.240][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:24.240][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:24.241][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:24.242][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:24.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:24.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:24.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:24.246][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:24.247][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:24.248][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:24.249][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:24.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:24.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:24.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:24.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:24.254][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:24.255][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:24.255][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:24.256][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:24.257][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:24.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:24.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:24.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:24.261][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:24.262][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:24.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:24.263][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:24.264][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:24.265][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:24.266][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:24.266][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:24.267][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:24.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:24.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:24.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:24.272][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:24.272][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:24.273][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:24.274][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:24.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:24.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:24.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:24.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:24.279][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:24.280][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:24.280][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:24.281][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:24.282][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:24.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:24.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:24.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:24.286][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:24.287][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:24.288][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:24.289][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:24.289][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:24.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:24.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:24.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:24.294][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:24.295][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:24.295][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:24.296][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:24.297][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:24.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:24.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:24.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:24.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:24.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:24.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:24.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:24.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:24.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:24.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:24.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:24.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:24.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:24.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:24.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:24.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:24.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:24.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:24.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:24.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:24.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:24.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:24.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:24.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:24.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:24.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:24.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:24.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:24.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:24.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:24.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:24.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:24.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:24.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:24.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:24.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:24.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:24.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:24.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:24.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:24.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:24.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:24.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:24.331][self$createEntryFromContent] Accession numbers: 65567.
biodb.TRACE[2022-10-15 08:05:24.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:24.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:24.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:24.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:24.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:24.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:24.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:24.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:24.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:24.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:24.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:24.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:24.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:24.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:24.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:24.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:24.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:24.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:24.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:24.354][private$loadEntries] Creating entries from ids [1]: "65576".
biodb.DEBUG[2022-10-15 08:05:24.355][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:24.356][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65576".
biodb.TRACE[2022-10-15 08:05:24.357][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:24.358][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:24.358][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:24.359][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:24.360][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:24.360][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:24.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:24.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:24.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:24.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:24.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:24.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:24.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:24.370][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.DEBUG[2022-10-15 08:05:24.371][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:24.372][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:24.373][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.TRACE[2022-10-15 08:05:24.776][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576).
biodb.DEBUG[2022-10-15 08:05:25.195][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:25.200][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.content"
biodb.TRACE[2022-10-15 08:05:25.208][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.request"
biodb.TRACE[2022-10-15 08:05:25.214][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65576.xml"
biodb.DEBUG[2022-10-15 08:05:25.217][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:25.227][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:25.228][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:25.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:25.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:25.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:25.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:25.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:25.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:25.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:25.238][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:25.239][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:25.240][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:25.240][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:25.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:25.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:25.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:25.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:25.246][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:25.246][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:25.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:25.248][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:25.249][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:25.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:25.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:25.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:25.253][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:25.254][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:25.255][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:25.256][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:25.256][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:25.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:25.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:25.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:25.261][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:25.262][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:25.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:25.263][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:25.264][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:25.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:25.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:25.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:25.269][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:25.269][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:25.270][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:25.271][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:25.272][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:25.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:25.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:25.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:25.276][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:25.277][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:25.278][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:25.278][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:25.279][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:25.280][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:25.281][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:25.281][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:25.282][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:25.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:25.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:25.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:25.287][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:25.288][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:25.288][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:25.289][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:25.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:25.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:25.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:25.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:25.294][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:25.295][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:25.296][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:25.297][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:25.297][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:25.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:25.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:25.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:25.302][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:25.303][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:25.304][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:25.304][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:25.305][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:25.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:25.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:25.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:25.310][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:25.311][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:25.311][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:25.312][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:25.313][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:25.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:25.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:25.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:25.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:25.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:25.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:25.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:25.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:25.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:25.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:25.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:25.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:25.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:25.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:25.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:25.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:25.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:25.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:25.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:25.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:25.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:25.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:25.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:25.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:25.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:25.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:25.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:25.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:25.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:25.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:25.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:25.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:25.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:25.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:25.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:25.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:25.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:25.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:25.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:25.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:25.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:25.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:25.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:25.349][self$createEntryFromContent] Accession numbers: 65576.
biodb.TRACE[2022-10-15 08:05:25.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:25.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:25.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:25.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:25.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:25.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:25.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:25.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:25.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:25.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:25.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:25.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:25.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:25.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:25.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:25.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:25.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:25.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:25.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:25.372][private$loadEntries] Creating entries from ids [1]: "66352".
biodb.DEBUG[2022-10-15 08:05:25.373][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:25.374][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66352".
biodb.TRACE[2022-10-15 08:05:25.375][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:25.375][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:25.376][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:25.377][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:25.378][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:25.378][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:25.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:25.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:25.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:25.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:25.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:25.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:25.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:25.387][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.DEBUG[2022-10-15 08:05:25.389][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:25.390][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:25.391][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.TRACE[2022-10-15 08:05:25.793][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352).
biodb.DEBUG[2022-10-15 08:05:26.215][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:26.220][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.content"
biodb.TRACE[2022-10-15 08:05:26.228][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.request"
biodb.TRACE[2022-10-15 08:05:26.235][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66352.xml"
biodb.DEBUG[2022-10-15 08:05:26.238][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:26.249][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:26.249][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:26.251][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:26.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:26.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:26.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:26.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:26.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:26.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:26.260][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:26.260][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:26.261][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:26.262][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:26.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:26.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:26.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:26.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:26.268][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:26.268][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:26.269][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:26.270][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:26.271][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:26.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:26.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:26.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:26.276][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:26.276][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:26.277][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:26.278][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:26.279][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:26.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:26.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:26.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:26.283][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:26.284][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:26.285][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:26.286][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:26.287][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:26.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:26.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:26.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:26.291][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:26.292][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:26.293][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:26.293][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:26.294][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:26.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:26.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:26.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:26.299][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:26.300][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:26.301][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:26.301][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:26.302][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:26.303][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:26.304][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:26.304][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:26.305][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:26.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:26.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:26.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:26.310][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:26.311][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:26.312][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:26.312][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:26.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:26.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:26.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:26.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:26.318][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:26.319][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:26.319][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:26.320][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:26.321][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:26.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:26.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:26.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:26.326][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:26.327][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:26.327][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:26.328][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:26.329][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:26.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:26.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:26.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:26.334][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:26.334][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:26.335][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:26.336][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:26.337][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:26.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:26.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:26.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:26.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:26.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:26.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:26.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:26.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:26.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:26.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:26.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:26.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:26.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:26.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:26.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:26.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:26.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:26.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:26.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:26.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:26.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:26.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:26.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:26.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:26.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:26.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:26.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:26.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:26.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:26.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:26.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:26.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:26.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:26.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:26.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:26.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:26.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:26.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:26.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:26.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:26.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:26.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:26.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:26.373][self$createEntryFromContent] Accession numbers: 66352.
biodb.TRACE[2022-10-15 08:05:26.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:26.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:26.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:26.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:26.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:26.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:26.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:26.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:26.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:26.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:26.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:26.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:26.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:26.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:26.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:26.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:26.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:26.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:26.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:26.397][private$loadEntries] Creating entries from ids [1]: "67567".
biodb.DEBUG[2022-10-15 08:05:26.398][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:26.399][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67567".
biodb.TRACE[2022-10-15 08:05:26.400][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:26.401][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:26.402][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:26.402][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:26.403][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:26.404][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:26.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:26.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:26.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:26.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:26.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:26.412][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:26.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:26.413][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.DEBUG[2022-10-15 08:05:26.415][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:26.416][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:26.417][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.TRACE[2022-10-15 08:05:26.834][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567).
biodb.DEBUG[2022-10-15 08:05:27.256][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:27.262][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.content"
biodb.TRACE[2022-10-15 08:05:27.270][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.request"
biodb.TRACE[2022-10-15 08:05:27.277][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67567.xml"
biodb.DEBUG[2022-10-15 08:05:27.280][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:27.294][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:27.295][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:27.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:27.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:27.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:27.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:27.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:27.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:27.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:27.306][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:27.307][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:27.308][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:27.309][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:27.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:27.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:27.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:27.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:27.315][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:27.315][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:27.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:27.317][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:27.318][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:27.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:27.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:27.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:27.323][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:27.324][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:27.324][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:27.325][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:27.326][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:27.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:27.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:27.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:27.331][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:27.332][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:27.333][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:27.333][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:27.334][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:27.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:27.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:27.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:27.339][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:27.340][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:27.341][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:27.342][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:27.343][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:27.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:27.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:27.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:27.348][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:27.348][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:27.349][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:27.350][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:27.351][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:27.352][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:27.352][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:27.353][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:27.354][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:27.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:27.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:27.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:27.359][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:27.360][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:27.361][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:27.361][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:27.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:27.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:27.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:27.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:27.367][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:27.368][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:27.369][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:27.370][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:27.371][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:27.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:27.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:27.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:27.376][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:27.376][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:27.377][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:27.378][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:27.379][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:27.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:27.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:27.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:27.384][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:27.385][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:27.385][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:27.386][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:27.387][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:27.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:27.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:27.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:27.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:27.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:27.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:27.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:27.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:27.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:27.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:27.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:27.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:27.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:27.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:27.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:27.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:27.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:27.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:27.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:27.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:27.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:27.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:27.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:27.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:27.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:27.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:27.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:27.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:27.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:27.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:27.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:27.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:27.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:27.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:27.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:27.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:27.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:27.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:27.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:27.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:27.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:27.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:27.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:27.424][self$createEntryFromContent] Accession numbers: 67567.
biodb.TRACE[2022-10-15 08:05:27.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:27.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:27.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:27.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:27.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:27.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:27.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:27.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:27.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:27.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:27.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:27.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:27.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:27.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:27.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:27.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:27.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:27.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:27.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:27.448][private$loadEntries] Creating entries from ids [1]: "67693".
biodb.DEBUG[2022-10-15 08:05:27.449][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:27.450][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67693".
biodb.TRACE[2022-10-15 08:05:27.451][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:27.452][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:27.453][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:27.453][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:27.454][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:27.455][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:27.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:27.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:27.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:27.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:27.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:27.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:27.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:27.465][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.DEBUG[2022-10-15 08:05:27.467][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:27.467][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:27.468][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.TRACE[2022-10-15 08:05:27.871][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693).
biodb.DEBUG[2022-10-15 08:05:28.292][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:28.297][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.content"
biodb.TRACE[2022-10-15 08:05:28.305][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.request"
biodb.TRACE[2022-10-15 08:05:28.312][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67693.xml"
biodb.DEBUG[2022-10-15 08:05:28.315][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:28.326][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:28.327][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:28.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:28.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:28.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:28.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:28.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:28.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:28.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:28.338][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:28.339][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:28.340][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:28.340][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:28.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:28.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:28.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:28.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:28.346][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:28.347][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:28.348][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:28.349][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:28.349][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:28.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:28.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:28.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:28.355][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:28.355][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:28.356][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:28.357][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:28.358][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:28.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:28.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:28.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:28.363][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:28.364][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:28.364][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:28.365][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:28.366][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:28.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:28.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:28.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:28.371][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:28.372][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:28.372][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:28.373][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:28.374][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:28.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:28.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:28.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:28.379][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:28.380][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:28.380][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:28.381][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:28.382][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:28.383][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:28.384][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:28.384][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:28.385][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:28.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:28.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:28.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:28.390][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:28.391][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:28.392][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:28.392][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:28.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:28.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:28.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:28.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:28.398][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:28.399][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:28.400][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:28.400][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:28.402][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:28.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:28.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:28.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:28.406][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:28.407][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:28.408][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:28.408][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:28.409][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:28.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:28.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:28.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:28.414][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:28.415][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:28.416][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:28.416][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:28.417][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:28.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:28.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:28.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:28.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:28.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:28.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:28.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:28.425][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:28.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:28.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:28.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:28.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:28.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:28.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:28.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:28.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:28.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:28.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:28.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:28.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:28.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:28.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:28.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:28.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:28.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:28.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:28.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:28.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:28.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:28.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:28.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:28.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:28.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:28.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:28.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:28.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:28.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:28.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:28.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:28.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:28.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:28.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:28.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:28.462][self$createEntryFromContent] Accession numbers: 67693.
biodb.TRACE[2022-10-15 08:05:28.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:28.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:28.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:28.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:28.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:28.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:28.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:28.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:28.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:28.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:28.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:28.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:28.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:28.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:28.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:28.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:28.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:28.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:28.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:28.479][private$loadEntries] Creating entries from ids [1]: "67700".
biodb.DEBUG[2022-10-15 08:05:28.480][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:28.481][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67700".
biodb.TRACE[2022-10-15 08:05:28.482][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:28.483][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:28.484][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:28.484][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:28.485][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:28.486][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:28.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:28.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:28.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:28.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:28.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:28.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:28.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:28.496][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.DEBUG[2022-10-15 08:05:28.498][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:28.498][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:28.499][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.TRACE[2022-10-15 08:05:29.221][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700).
biodb.DEBUG[2022-10-15 08:05:30.007][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:30.012][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.content"
biodb.TRACE[2022-10-15 08:05:30.020][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.request"
biodb.TRACE[2022-10-15 08:05:30.027][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67700.xml"
biodb.DEBUG[2022-10-15 08:05:30.030][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:30.041][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:30.041][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:30.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:30.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:30.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:30.048][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:30.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:30.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:30.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:30.052][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:30.052][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:30.053][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:30.054][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:30.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:30.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:30.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:30.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:30.059][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:30.060][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:30.061][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:30.062][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:30.062][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:30.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:30.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:30.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:30.067][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:30.068][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:30.069][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:30.069][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:30.070][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:30.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:30.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:30.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:30.075][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:30.076][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:30.077][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:30.077][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:30.078][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:30.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:30.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:30.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:30.083][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:30.084][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:30.084][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:30.085][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:30.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:30.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:30.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:30.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:30.091][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:30.091][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:30.092][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:30.093][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:30.094][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:30.095][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:30.095][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:30.096][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:30.097][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:30.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:30.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:30.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:30.102][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:30.102][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:30.103][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:30.104][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:30.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:30.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:30.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:30.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:30.109][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:30.110][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:30.111][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:30.112][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:30.113][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:30.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:30.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:30.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:30.117][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:30.118][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:30.119][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:30.120][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:30.121][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:30.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:30.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:30.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:30.125][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:30.126][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:30.127][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:30.128][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:30.128][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:30.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:30.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:30.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:30.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:30.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:30.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:30.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:30.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:30.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:30.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:30.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:30.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:30.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:30.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:30.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:30.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:30.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:30.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:30.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:30.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:30.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:30.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:30.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:30.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:30.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:30.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:30.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:30.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:30.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:30.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:30.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:30.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:30.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:30.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:30.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:30.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:30.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:30.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:30.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:30.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:30.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:30.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:30.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:30.172][self$createEntryFromContent] Accession numbers: 67700.
biodb.TRACE[2022-10-15 08:05:30.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:30.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:30.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:30.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:30.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:30.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:30.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:30.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:30.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:30.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:30.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:30.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:30.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:30.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:30.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:30.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:30.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:30.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:30.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:30.189][private$loadEntries] Creating entries from ids [1]: "67701".
biodb.DEBUG[2022-10-15 08:05:30.190][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:30.191][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67701".
biodb.TRACE[2022-10-15 08:05:30.192][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:30.193][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:30.193][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:30.194][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:30.195][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:30.196][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:30.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:30.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:30.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:30.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:30.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:30.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:30.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:30.205][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.DEBUG[2022-10-15 08:05:30.207][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:30.208][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:30.208][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.TRACE[2022-10-15 08:05:30.629][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701).
biodb.DEBUG[2022-10-15 08:05:31.048][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:31.053][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.content"
biodb.TRACE[2022-10-15 08:05:31.061][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.request"
biodb.TRACE[2022-10-15 08:05:31.068][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67701.xml"
biodb.DEBUG[2022-10-15 08:05:31.071][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:31.082][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:31.083][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:31.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:31.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:31.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:31.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:31.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:31.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:31.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:31.093][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:31.094][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:31.095][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:31.095][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:31.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:31.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:31.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:31.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:31.101][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:31.102][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:31.103][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:31.103][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:31.104][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:31.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:31.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:31.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:31.109][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:31.110][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:31.110][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:31.111][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:31.112][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:31.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:31.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:31.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:31.117][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:31.118][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:31.118][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:31.119][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:31.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:31.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:31.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:31.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:31.125][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:31.126][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:31.126][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:31.127][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:31.128][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:31.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:31.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:31.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:31.133][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:31.133][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:31.134][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:31.135][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:31.136][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:31.137][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:31.137][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:31.138][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:31.139][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:31.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:31.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:31.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:31.144][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:31.144][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:31.145][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:31.146][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:31.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:31.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:31.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:31.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:31.152][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:31.152][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:31.153][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:31.154][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:31.155][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:31.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:31.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:31.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:31.160][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:31.160][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:31.161][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:31.162][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:31.163][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:31.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:31.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:31.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:31.167][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:31.168][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:31.169][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:31.170][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:31.170][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:31.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:31.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:31.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:31.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:31.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:31.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:31.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:31.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:31.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:31.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:31.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:31.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:31.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:31.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:31.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:31.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:31.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:31.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:31.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:31.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:31.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:31.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:31.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:31.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:31.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:31.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:31.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:31.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:31.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:31.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:31.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:31.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:31.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:31.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:31.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:31.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:31.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:31.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:31.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:31.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:31.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:31.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:31.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:31.214][self$createEntryFromContent] Accession numbers: 67701.
biodb.TRACE[2022-10-15 08:05:31.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:31.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:31.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:31.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:31.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:31.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:31.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:31.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:31.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:31.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:31.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:31.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:31.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:31.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:31.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:31.229][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:31.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:31.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:31.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:31.232][private$loadEntries] Creating entries from ids [1]: "67705".
biodb.DEBUG[2022-10-15 08:05:31.233][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:31.234][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67705".
biodb.TRACE[2022-10-15 08:05:31.235][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:31.236][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:31.237][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:31.237][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:31.238][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:31.239][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:31.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:31.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:31.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:31.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:31.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:31.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:31.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:31.249][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.DEBUG[2022-10-15 08:05:31.251][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:31.252][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:31.253][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.TRACE[2022-10-15 08:05:31.658][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705).
biodb.DEBUG[2022-10-15 08:05:32.083][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:32.088][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.content"
biodb.TRACE[2022-10-15 08:05:32.096][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.request"
biodb.TRACE[2022-10-15 08:05:32.103][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67705.xml"
biodb.DEBUG[2022-10-15 08:05:32.106][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:32.121][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:32.122][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:32.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:32.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:32.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:32.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:32.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:32.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:32.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:32.133][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:32.134][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:32.135][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:32.136][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:32.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:32.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:32.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:32.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:32.142][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:32.143][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:32.144][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:32.144][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:32.145][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:32.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:32.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:32.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:32.150][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:32.151][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:32.152][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:32.153][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:32.154][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:32.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:32.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:32.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:32.159][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:32.160][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:32.160][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:32.161][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:32.162][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:32.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:32.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:32.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:32.167][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:32.168][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:32.169][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:32.170][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:32.170][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:32.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:32.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:32.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:32.175][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:32.176][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:32.177][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:32.178][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:32.178][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:32.179][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:32.180][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:32.181][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:32.182][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:32.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:32.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:32.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:32.186][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:32.187][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:32.188][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:32.189][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:32.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:32.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:32.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:32.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:32.194][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:32.195][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:32.196][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:32.196][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:32.197][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:32.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:32.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:32.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:32.202][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:32.203][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:32.204][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:32.205][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:32.205][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:32.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:32.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:32.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:32.210][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:32.211][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:32.212][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:32.212][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:32.213][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:32.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:32.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:32.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:32.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:32.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:32.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:32.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:32.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:32.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:32.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:32.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:32.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:32.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:32.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:32.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:32.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:32.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:32.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:32.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:32.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:32.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:32.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:32.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:32.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:32.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:32.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:32.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:32.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:32.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:32.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:32.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:32.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:32.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:32.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:32.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:32.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:32.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:32.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:32.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:32.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:32.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:32.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:32.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:32.258][self$createEntryFromContent] Accession numbers: 67705.
biodb.TRACE[2022-10-15 08:05:32.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:32.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:32.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:32.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:32.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:32.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:32.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:32.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:32.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:32.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:32.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:32.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:32.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:32.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:32.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:32.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:32.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:32.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:32.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:32.276][private$loadEntries] Creating entries from ids [1]: "75265".
biodb.DEBUG[2022-10-15 08:05:32.276][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:32.278][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75265".
biodb.TRACE[2022-10-15 08:05:32.278][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:32.279][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:32.280][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:32.281][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:32.282][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:32.282][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:32.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:32.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:32.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:32.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:32.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:32.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:32.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:32.292][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.DEBUG[2022-10-15 08:05:32.294][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:32.295][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:32.296][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.TRACE[2022-10-15 08:05:32.706][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265).
biodb.DEBUG[2022-10-15 08:05:33.124][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:33.129][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.content"
biodb.TRACE[2022-10-15 08:05:33.137][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.request"
biodb.TRACE[2022-10-15 08:05:33.144][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75265.xml"
biodb.DEBUG[2022-10-15 08:05:33.147][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:33.157][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:33.158][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:33.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:33.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:33.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:33.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:33.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:33.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:33.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:33.169][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:33.169][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:33.170][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:33.171][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:33.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:33.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:33.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:33.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:33.177][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:33.177][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:33.178][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:33.179][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:33.180][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:33.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:33.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:33.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:33.184][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:33.185][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:33.186][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:33.186][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:33.187][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:33.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:33.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:33.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:33.192][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:33.193][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:33.194][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:33.194][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:33.195][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:33.196][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:33.197][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:33.197][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:33.198][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:33.199][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:33.200][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:33.200][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:33.201][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:33.202][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:33.203][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:33.203][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:33.204][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:33.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:33.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:33.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:33.209][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:33.210][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:33.211][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:33.211][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:33.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:33.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:33.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:33.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:33.217][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:33.218][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:33.218][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:33.219][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:33.220][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:33.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:33.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:33.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:33.225][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:33.225][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:33.226][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:33.227][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:33.228][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:33.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:33.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:33.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:33.232][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:33.233][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:33.234][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:33.235][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:33.236][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:33.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:33.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:33.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:33.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:33.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:33.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:33.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:33.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:33.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:33.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:33.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:33.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:33.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:33.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:33.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:33.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:33.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:33.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:33.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:33.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:33.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:33.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:33.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:33.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:33.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:33.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:33.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:33.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:33.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:33.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:33.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:33.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:33.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:33.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:33.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:33.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:33.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:33.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:33.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:33.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:33.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:33.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:33.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:33.278][self$createEntryFromContent] Accession numbers: 75265.
biodb.TRACE[2022-10-15 08:05:33.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:33.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:33.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:33.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:33.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:33.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:33.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:33.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:33.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:33.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:33.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:33.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:33.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:33.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:33.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:33.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:33.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:33.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:33.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:33.296][private$loadEntries] Creating entries from ids [1]: "77370".
biodb.DEBUG[2022-10-15 08:05:33.296][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:33.298][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77370".
biodb.TRACE[2022-10-15 08:05:33.299][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:33.299][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:33.300][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:33.301][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:33.302][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:33.302][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:33.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:33.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:33.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:33.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:33.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:33.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:33.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:33.312][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.DEBUG[2022-10-15 08:05:33.314][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:33.315][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:33.316][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.TRACE[2022-10-15 08:05:33.741][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370).
biodb.DEBUG[2022-10-15 08:05:34.175][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:34.181][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.content"
biodb.TRACE[2022-10-15 08:05:34.188][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.request"
biodb.TRACE[2022-10-15 08:05:34.195][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77370.xml"
biodb.DEBUG[2022-10-15 08:05:34.198][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:34.209][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:34.210][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:34.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:34.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:34.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:34.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:34.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:34.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:34.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:34.220][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:34.221][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:34.222][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:34.222][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:34.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:34.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:34.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:34.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:34.228][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:34.229][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:34.230][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:34.230][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:34.231][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:34.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:34.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:34.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:34.236][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:34.237][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:34.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:34.238][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:34.239][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:34.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:34.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:34.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:34.244][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:34.245][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:34.245][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:34.246][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:34.247][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:34.248][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:34.248][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:34.249][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:34.250][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:34.251][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:34.251][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:34.252][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:34.253][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:34.254][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:34.254][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:34.255][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:34.256][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:34.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:34.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:34.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:34.261][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:34.261][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:34.262][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:34.263][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:34.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:34.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:34.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:34.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:34.268][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:34.269][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:34.270][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:34.271][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:34.272][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:34.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:34.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:34.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:34.276][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:34.277][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:34.278][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:34.278][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:34.279][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:34.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:34.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:34.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:34.284][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:34.285][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:34.285][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:34.286][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:34.287][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:34.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:34.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:34.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:34.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:34.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:34.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:34.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:34.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:34.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:34.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:34.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:34.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:34.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:34.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:34.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:34.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:34.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:34.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:34.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:34.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:34.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:34.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:34.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:34.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:34.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:34.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:34.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:34.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:34.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:34.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:34.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:34.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:34.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:34.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:34.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:34.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:34.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:34.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:34.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:34.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:34.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:34.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:34.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:34.323][self$createEntryFromContent] Accession numbers: 77370.
biodb.TRACE[2022-10-15 08:05:34.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:34.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:34.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:34.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:34.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:34.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:34.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:34.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:34.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:34.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:34.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:34.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:34.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:34.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:34.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:34.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:34.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:34.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:34.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:34.347][private$loadEntries] Creating entries from ids [1]: "79074".
biodb.DEBUG[2022-10-15 08:05:34.348][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:34.349][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79074".
biodb.TRACE[2022-10-15 08:05:34.350][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:34.351][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:34.352][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:34.353][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:34.353][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:34.354][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:34.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:34.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:34.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:34.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:34.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:34.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:34.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:34.364][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.DEBUG[2022-10-15 08:05:34.366][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:34.366][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:34.367][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.TRACE[2022-10-15 08:05:34.830][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074).
biodb.DEBUG[2022-10-15 08:05:35.724][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:35.728][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.content"
biodb.TRACE[2022-10-15 08:05:35.736][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.request"
biodb.TRACE[2022-10-15 08:05:35.743][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79074.xml"
biodb.DEBUG[2022-10-15 08:05:35.745][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:35.756][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:35.757][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:35.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:35.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:35.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:35.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:35.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:35.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:35.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:35.767][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:35.768][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:35.769][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:35.769][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:35.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:35.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:35.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:35.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:35.775][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:35.776][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:35.777][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:35.777][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:35.778][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:35.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:35.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:35.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:35.783][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:35.784][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:35.784][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:35.785][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:35.786][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:35.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:35.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:35.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:35.791][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:35.792][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:35.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:35.793][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:35.794][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:35.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:35.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:35.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:35.799][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:35.799][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:35.800][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:35.801][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:35.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:35.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:35.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:35.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:35.806][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:35.807][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:35.808][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:35.808][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:35.809][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:35.810][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:35.811][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:35.811][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:35.812][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:35.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:35.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:35.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:35.817][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:35.818][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:35.818][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:35.819][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:35.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:35.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:35.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:35.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:35.825][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:35.825][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:35.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:35.827][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:35.828][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:35.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:35.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:35.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:35.833][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:35.833][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:35.834][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:35.835][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:35.836][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:35.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:35.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:35.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:35.840][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:35.841][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:35.842][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:35.842][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:35.843][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:35.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:35.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:35.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:35.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:35.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:35.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:35.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:35.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:35.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:35.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:35.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:35.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:35.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:35.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:35.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:35.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:35.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:35.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:35.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:35.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:35.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:35.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:35.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:35.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:35.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:35.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:35.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:35.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:35.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:35.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:35.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:35.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:35.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:35.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:35.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:35.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:35.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:35.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:35.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:35.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:35.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:35.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:35.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:35.885][self$createEntryFromContent] Accession numbers: 79074.
biodb.TRACE[2022-10-15 08:05:35.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:35.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:35.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:35.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:35.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:35.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:35.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:35.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:35.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:35.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:35.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:35.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:35.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:35.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:35.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:35.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:35.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:35.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:35.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:35.919][private$loadEntries] Creating entries from ids [1]: "79302".
biodb.DEBUG[2022-10-15 08:05:35.921][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:35.923][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79302".
biodb.TRACE[2022-10-15 08:05:35.925][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:35.927][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:35.928][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:35.929][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:35.930][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:35.932][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:35.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:35.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:35.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:35.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:35.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:35.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:35.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:35.947][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.DEBUG[2022-10-15 08:05:35.950][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:35.951][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:35.952][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.TRACE[2022-10-15 08:05:36.389][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302).
biodb.DEBUG[2022-10-15 08:05:36.818][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:36.824][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.content"
biodb.TRACE[2022-10-15 08:05:36.833][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.request"
biodb.TRACE[2022-10-15 08:05:36.841][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79302.xml"
biodb.DEBUG[2022-10-15 08:05:36.844][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:36.858][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:36.859][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:36.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:36.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:36.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:36.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:36.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:36.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:36.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:36.871][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:36.872][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:36.873][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:36.874][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:36.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:36.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:36.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:36.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:36.880][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:36.881][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:36.882][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:36.883][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:36.884][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:36.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:36.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:36.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:36.889][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:36.890][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:36.891][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:36.892][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:36.893][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:36.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:36.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:36.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:36.898][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:36.899][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:36.900][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:36.900][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:36.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:36.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:36.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:36.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:36.907][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:36.908][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:36.909][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:36.909][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:36.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:36.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:36.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:36.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:36.916][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:36.917][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:36.917][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:36.918][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:36.919][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:36.920][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:36.921][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:36.922][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:36.923][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:36.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:36.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:36.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:36.928][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:36.929][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:36.929][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:36.930][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:36.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:36.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:36.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:36.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:36.936][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:36.937][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:36.938][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:36.939][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:36.940][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:36.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:36.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:36.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:36.945][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:36.946][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:36.947][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:36.947][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:36.948][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:36.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:36.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:36.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:36.954][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:36.954][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:36.955][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:36.956][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:36.957][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:36.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:36.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:36.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:36.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:36.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:36.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:36.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:36.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:36.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:36.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:36.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:36.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:36.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:36.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:36.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:36.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:36.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:36.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:36.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:36.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:36.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:36.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:36.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:36.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:36.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:36.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:36.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:36.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:36.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:36.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:36.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:36.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:36.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:36.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:36.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:36.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:36.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:36.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:36.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:36.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:36.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:36.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:36.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:37.007][self$createEntryFromContent] Accession numbers: 79302.
biodb.TRACE[2022-10-15 08:05:37.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:37.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:37.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:37.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:37.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:37.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:37.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:37.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:37.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:37.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:37.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:37.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:37.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:37.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:37.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:37.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:37.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:37.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:37.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:37.030][private$loadEntries] Creating entries from ids [1]: "84164".
biodb.DEBUG[2022-10-15 08:05:37.030][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:37.032][cch$loadFileContent] Trying to load 1 files from cache: [1]: "84164".
biodb.TRACE[2022-10-15 08:05:37.033][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:37.033][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:37.034][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:37.035][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:37.036][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:37.037][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:37.039][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:37.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:37.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:37.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:37.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:37.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:37.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:37.047][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.DEBUG[2022-10-15 08:05:37.049][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:37.050][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:37.051][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.TRACE[2022-10-15 08:05:37.466][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164).
biodb.DEBUG[2022-10-15 08:05:37.896][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:37.901][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.content"
biodb.TRACE[2022-10-15 08:05:37.908][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.request"
biodb.TRACE[2022-10-15 08:05:37.915][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/84164.xml"
biodb.DEBUG[2022-10-15 08:05:37.918][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:37.929][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:37.930][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:37.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:37.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:37.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:37.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:37.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:37.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:37.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:37.940][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:37.941][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:37.941][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:37.942][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:37.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:37.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:37.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:37.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:37.948][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:37.948][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:37.949][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:37.950][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:37.951][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:37.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:37.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:37.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:37.955][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:37.956][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:37.957][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:37.958][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:37.958][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:37.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:37.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:37.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:37.963][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:37.964][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:37.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:37.965][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:37.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:37.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:37.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:37.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:37.971][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:37.972][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:37.972][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:37.973][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:37.974][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:37.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:37.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:37.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:37.978][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:37.979][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:37.980][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:37.981][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:37.981][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:37.982][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:37.983][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:37.984][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:37.985][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:37.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:37.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:37.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:37.989][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:37.990][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:37.991][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:37.991][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:37.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:37.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:37.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:37.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:37.997][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:37.998][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:37.998][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:37.999][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:38.000][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:38.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:38.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:38.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:38.005][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:38.005][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:38.006][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:38.007][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:38.008][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:38.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:38.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:38.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:38.012][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:38.013][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:38.014][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:38.014][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:38.015][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:38.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:38.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:38.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:38.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:38.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:38.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:38.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:38.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:38.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:38.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:38.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:38.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:38.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:38.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:38.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:38.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:38.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:38.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:38.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:38.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:38.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:38.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:38.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:38.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:38.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:38.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:38.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:38.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:38.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:38.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:38.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:38.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:38.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:38.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:38.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:38.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:38.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:38.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:38.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:38.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:38.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:38.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:38.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:38.076][self$createEntryFromContent] Accession numbers: 84164.
biodb.TRACE[2022-10-15 08:05:38.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:38.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:38.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:38.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:38.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:38.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:38.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:38.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:38.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:38.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:38.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:38.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:38.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:38.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:38.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:38.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:38.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:38.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:38.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:38.095][private$loadEntries] Creating entries from ids [1]: "132314".
biodb.DEBUG[2022-10-15 08:05:38.096][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:38.097][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132314".
biodb.TRACE[2022-10-15 08:05:38.098][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:38.099][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:38.100][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:38.101][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:38.102][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:38.102][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:38.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:38.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:38.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:38.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:38.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:38.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:38.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:38.113][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.DEBUG[2022-10-15 08:05:38.115][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:38.116][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:38.117][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.TRACE[2022-10-15 08:05:38.534][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314).
biodb.DEBUG[2022-10-15 08:05:38.963][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:38.971][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.content"
biodb.TRACE[2022-10-15 08:05:38.984][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.request"
biodb.TRACE[2022-10-15 08:05:38.995][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132314.xml"
biodb.DEBUG[2022-10-15 08:05:38.999][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:39.016][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:39.017][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:39.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:39.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:39.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:39.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:39.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:39.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:39.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:39.033][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:39.035][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:39.036][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:39.037][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:39.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:39.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:39.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:39.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:39.045][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:39.046][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:39.047][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:39.048][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:39.050][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:39.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:39.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:39.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:39.060][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:39.063][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:39.065][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:39.067][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:39.070][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:39.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:39.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:39.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:39.075][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:39.076][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:39.077][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:39.077][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:39.078][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:39.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:39.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:39.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:39.083][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:39.084][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:39.085][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:39.086][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:39.087][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:39.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:39.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:39.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:39.092][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:39.093][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:39.093][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:39.094][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:39.095][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:39.096][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:39.097][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:39.097][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:39.098][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:39.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:39.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:39.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:39.103][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:39.104][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:39.105][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:39.105][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:39.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:39.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:39.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:39.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:39.111][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:39.112][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:39.113][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:39.114][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:39.115][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:39.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:39.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:39.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:39.120][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:39.121][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:39.121][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:39.122][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:39.123][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:39.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:39.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:39.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:39.128][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:39.129][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:39.130][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:39.130][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:39.131][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:39.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:39.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:39.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:39.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:39.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:39.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:39.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:39.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:39.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:39.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:39.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:39.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:39.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:39.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:39.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:39.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:39.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:39.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:39.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:39.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:39.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:39.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:39.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:39.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:39.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:39.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:39.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:39.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:39.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:39.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:39.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:39.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:39.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:39.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:39.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:39.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:39.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:39.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:39.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:39.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:39.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:39.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:39.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:39.177][self$createEntryFromContent] Accession numbers: 132314.
biodb.TRACE[2022-10-15 08:05:39.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:39.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:39.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:39.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:39.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:39.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:39.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:39.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:39.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:39.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:39.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:39.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:39.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:39.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:39.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:39.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:39.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:39.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:39.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:39.194][private$loadEntries] Creating entries from ids [1]: "132338".
biodb.DEBUG[2022-10-15 08:05:39.195][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:39.196][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132338".
biodb.TRACE[2022-10-15 08:05:39.197][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:39.197][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:39.198][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:39.199][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:39.200][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:39.200][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:39.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:39.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:39.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:39.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:39.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:39.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:39.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:39.210][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.DEBUG[2022-10-15 08:05:39.212][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:39.213][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:39.214][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.TRACE[2022-10-15 08:05:39.632][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338).
biodb.DEBUG[2022-10-15 08:05:40.106][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:40.113][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.content"
biodb.TRACE[2022-10-15 08:05:40.123][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.request"
biodb.TRACE[2022-10-15 08:05:40.132][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132338.xml"
biodb.DEBUG[2022-10-15 08:05:40.136][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:40.148][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:40.149][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:40.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:40.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:40.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:40.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:40.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:40.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:40.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:40.162][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:40.162][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:40.163][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:40.164][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:40.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:40.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:40.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:40.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:40.171][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:40.172][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:40.173][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:40.173][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:40.175][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:40.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:40.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:40.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:40.181][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:40.182][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:40.183][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:40.184][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:40.184][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:40.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:40.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:40.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:40.190][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:40.191][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:40.191][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:40.192][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:40.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:40.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:40.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:40.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:40.199][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:40.200][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:40.201][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:40.202][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:40.203][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:40.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:40.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:40.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:40.209][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:40.210][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:40.211][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:40.212][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:40.212][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:40.213][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:40.214][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:40.215][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:40.216][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:40.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:40.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:40.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:40.221][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:40.222][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:40.223][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:40.224][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:40.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:40.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:40.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:40.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:40.231][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:40.231][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:40.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:40.233][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:40.234][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:40.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:40.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:40.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:40.240][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:40.241][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:40.242][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:40.243][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:40.244][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:40.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:40.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:40.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:40.249][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:40.250][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:40.251][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:40.252][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:40.253][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:40.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:40.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:40.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:40.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:40.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:40.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:40.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:40.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:40.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:40.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:40.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:40.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:40.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:40.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:40.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:40.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:40.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:40.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:40.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:40.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:40.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:40.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:40.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:40.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:40.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:40.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:40.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:40.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:40.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:40.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:40.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:40.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:40.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:40.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:40.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:40.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:40.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:40.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:40.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:40.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:40.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:40.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:40.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:40.298][self$createEntryFromContent] Accession numbers: 132338.
biodb.TRACE[2022-10-15 08:05:40.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:40.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:40.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:40.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:40.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:40.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:40.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:40.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:40.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:40.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:40.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:40.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:40.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:40.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:40.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:40.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:40.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:40.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:40.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:40.316][private$loadEntries] Creating entries from ids [1]: "139019".
biodb.DEBUG[2022-10-15 08:05:40.317][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:40.318][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139019".
biodb.TRACE[2022-10-15 08:05:40.319][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:40.320][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:40.320][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:40.321][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:40.322][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:40.323][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:40.325][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:40.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:40.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:40.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:40.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:40.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:40.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:40.333][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.DEBUG[2022-10-15 08:05:40.335][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:40.335][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:40.336][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.TRACE[2022-10-15 08:05:40.747][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019).
biodb.DEBUG[2022-10-15 08:05:41.179][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:41.184][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.content"
biodb.TRACE[2022-10-15 08:05:41.191][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.request"
biodb.TRACE[2022-10-15 08:05:41.198][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139019.xml"
biodb.DEBUG[2022-10-15 08:05:41.201][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:41.211][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:41.212][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:41.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:41.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:41.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:41.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:41.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:41.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:41.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:41.221][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:41.222][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:41.223][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:41.223][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:41.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:41.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:41.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:41.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:41.229][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:41.229][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:41.230][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:41.231][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:41.232][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:41.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:41.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:41.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:41.236][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:41.237][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:41.238][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:41.238][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:41.239][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:41.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:41.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:41.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:41.243][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:41.244][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:41.245][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:41.246][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:41.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:41.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:41.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:41.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:41.251][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:41.251][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:41.252][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:41.253][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:41.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:41.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:41.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:41.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:41.258][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:41.259][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:41.259][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:41.260][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:41.261][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:41.262][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:41.262][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:41.263][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:41.264][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:41.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:41.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:41.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:41.268][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:41.269][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:41.270][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:41.270][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:41.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:41.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:41.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:41.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:41.276][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:41.276][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:41.277][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:41.278][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:41.278][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:41.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:41.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:41.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:41.283][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:41.284][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:41.285][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:41.285][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:41.286][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:41.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:41.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:41.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:41.291][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:41.291][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:41.292][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:41.293][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:41.294][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:41.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:41.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:41.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:41.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:41.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:41.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:41.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:41.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:41.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:41.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:41.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:41.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:41.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:41.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:41.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:41.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:41.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:41.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:41.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:41.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:41.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:41.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:41.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:41.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:41.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:41.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:41.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:41.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:41.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:41.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:41.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:41.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:41.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:41.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:41.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:41.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:41.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:41.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:41.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:41.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:41.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:41.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:41.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:41.351][self$createEntryFromContent] Accession numbers: 139019.
biodb.TRACE[2022-10-15 08:05:41.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:41.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:41.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:41.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:41.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:41.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:41.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:41.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:41.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:41.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:41.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:41.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:41.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:41.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:41.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:41.365][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:41.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:41.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:41.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:41.368][private$loadEntries] Creating entries from ids [1]: "139367".
biodb.DEBUG[2022-10-15 08:05:41.368][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:41.369][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139367".
biodb.TRACE[2022-10-15 08:05:41.370][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:41.371][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:41.372][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:41.373][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:41.373][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:41.374][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:41.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:41.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:41.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:41.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:41.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:41.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:41.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:41.384][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.DEBUG[2022-10-15 08:05:41.386][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:41.386][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:41.387][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.TRACE[2022-10-15 08:05:41.791][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367).
biodb.DEBUG[2022-10-15 08:05:42.326][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:42.332][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.content"
biodb.TRACE[2022-10-15 08:05:42.339][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.request"
biodb.TRACE[2022-10-15 08:05:42.346][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139367.xml"
biodb.DEBUG[2022-10-15 08:05:42.349][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:42.360][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:42.361][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:42.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:42.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:42.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:42.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:42.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:42.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:42.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:42.371][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:42.372][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:42.372][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:42.373][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:42.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:42.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:42.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:42.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:42.379][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:42.379][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:42.380][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:42.381][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:42.382][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:42.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:42.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:42.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:42.386][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:42.387][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:42.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:42.389][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:42.389][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:42.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:42.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:42.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:42.394][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:42.395][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:42.396][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:42.396][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:42.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:42.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:42.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:42.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:42.402][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:42.403][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:42.403][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:42.404][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:42.405][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:42.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:42.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:42.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:42.409][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:42.410][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:42.411][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:42.412][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:42.413][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:42.414][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:42.414][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:42.415][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:42.416][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:42.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:42.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:42.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:42.420][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:42.421][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:42.422][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:42.423][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:42.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:42.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:42.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:42.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:42.428][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:42.429][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:42.430][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:42.430][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:42.431][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:42.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:42.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:42.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:42.436][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:42.437][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:42.437][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:42.438][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:42.439][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:42.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:42.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:42.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:42.444][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:42.444][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:42.445][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:42.446][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:42.447][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:42.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:42.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:42.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:42.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:42.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:42.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:42.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:42.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:42.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:42.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:42.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:42.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:42.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:42.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:42.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:42.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:42.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:42.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:42.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:42.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:42.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:42.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:42.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:42.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:42.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:42.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:42.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:42.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:42.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:42.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:42.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:42.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:42.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:42.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:42.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:42.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:42.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:42.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:42.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:42.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:42.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:42.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:42.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:42.489][self$createEntryFromContent] Accession numbers: 139367.
biodb.TRACE[2022-10-15 08:05:42.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:42.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:42.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:42.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:42.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:42.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:42.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:42.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:42.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:42.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:42.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:42.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:42.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:42.499][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:42.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:42.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:42.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:42.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:42.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:42.506][private$loadEntries] Creating entries from ids [1]: "145029".
biodb.DEBUG[2022-10-15 08:05:42.507][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:42.508][cch$loadFileContent] Trying to load 1 files from cache: [1]: "145029".
biodb.TRACE[2022-10-15 08:05:42.509][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:42.509][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:42.510][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:42.511][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:42.512][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:42.512][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:42.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:42.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:42.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:42.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:42.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:42.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:42.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:42.522][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.DEBUG[2022-10-15 08:05:42.524][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:42.525][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:42.526][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.TRACE[2022-10-15 08:05:42.936][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029).
biodb.DEBUG[2022-10-15 08:05:43.456][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:43.464][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.content"
biodb.TRACE[2022-10-15 08:05:43.476][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.request"
biodb.TRACE[2022-10-15 08:05:43.487][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/145029.xml"
biodb.DEBUG[2022-10-15 08:05:43.491][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:43.505][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:43.507][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:43.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:43.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:43.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:43.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:43.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:43.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:43.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:43.521][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:43.522][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:43.523][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:43.524][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:43.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:43.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:43.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:43.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:43.531][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:43.532][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:43.533][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:43.534][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:43.535][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:43.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:43.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:43.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:43.541][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:43.542][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:43.543][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:43.544][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:43.545][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:43.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:43.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:43.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:43.550][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:43.551][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:43.552][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:43.553][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:43.554][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:43.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:43.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:43.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:43.560][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:43.561][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:43.562][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:43.563][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:43.564][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:43.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:43.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:43.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:43.570][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:43.571][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:43.572][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:43.573][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:43.574][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:43.575][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:43.576][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:43.577][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:43.578][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:43.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:43.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:43.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:43.584][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:43.585][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:43.586][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:43.587][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:43.588][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:43.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:43.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:43.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:43.594][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:43.595][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:43.596][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:43.597][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:43.598][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:43.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:43.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:43.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:43.604][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:43.605][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:43.606][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:43.607][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:43.608][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:43.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:43.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:43.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:43.613][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:43.614][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:43.615][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:43.616][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:43.617][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:43.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:43.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:43.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:43.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:43.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:43.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:43.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:43.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:43.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:43.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:43.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:43.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:43.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:43.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:43.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:43.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:43.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:43.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:43.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:43.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:43.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:43.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:43.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:43.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:43.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:43.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:43.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:43.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:43.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:43.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:43.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:43.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:43.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:43.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:43.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:43.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:43.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:43.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:43.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:43.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:43.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:43.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:43.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:43.684][self$createEntryFromContent] Accession numbers: 145029.
biodb.TRACE[2022-10-15 08:05:43.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:43.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:43.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:43.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:43.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:43.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:43.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:43.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:43.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:43.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:43.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:43.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:43.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:43.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:43.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:43.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:43.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:43.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:43.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:43.710][private$loadEntries] Creating entries from ids [1]: "173077".
biodb.DEBUG[2022-10-15 08:05:43.711][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:43.713][cch$loadFileContent] Trying to load 1 files from cache: [1]: "173077".
biodb.TRACE[2022-10-15 08:05:43.714][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:43.715][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:43.716][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:43.717][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:43.718][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:43.719][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:43.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:43.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:43.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:43.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:43.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:43.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:43.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:43.732][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.DEBUG[2022-10-15 08:05:43.735][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:43.736][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:43.738][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.TRACE[2022-10-15 08:05:44.272][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077).
biodb.DEBUG[2022-10-15 08:05:44.826][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:44.831][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.content"
biodb.TRACE[2022-10-15 08:05:44.840][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.request"
biodb.TRACE[2022-10-15 08:05:44.847][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/173077.xml"
biodb.DEBUG[2022-10-15 08:05:44.850][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:44.862][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:44.863][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:44.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:44.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:44.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:44.870][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:44.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:44.871][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:44.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:44.874][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:44.875][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:44.876][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:44.876][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:44.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:44.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:44.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:44.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:44.883][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:44.883][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:44.884][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:44.885][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:44.886][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:44.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:44.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:44.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:44.891][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:44.892][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:44.892][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:44.893][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:44.894][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:44.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:44.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:44.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:44.899][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:44.900][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:44.901][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:44.901][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:44.902][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:44.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:44.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:44.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:44.907][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:44.908][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:44.909][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:44.910][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:44.911][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:44.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:44.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:44.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:44.916][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:44.916][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:44.917][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:44.918][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:44.919][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:44.920][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:44.920][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:44.921][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:44.922][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:44.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:44.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:44.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:44.927][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:44.928][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:44.929][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:44.929][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:44.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:44.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:44.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:44.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:44.935][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:44.936][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:44.937][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:44.938][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:44.939][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:44.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:44.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:44.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:44.944][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:44.944][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:44.945][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:44.946][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:44.947][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:44.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:44.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:44.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:44.952][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:44.953][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:44.953][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:44.954][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:44.955][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:44.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:44.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:44.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:44.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:44.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:44.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:44.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:44.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:44.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:44.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:44.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:44.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:44.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:44.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:44.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:44.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:44.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:44.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:44.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:44.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:44.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:44.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:44.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:44.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:44.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:44.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:44.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:44.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:44.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:44.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:44.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:44.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:44.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:44.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:44.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:44.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:44.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:44.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:44.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:44.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:45.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:45.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:45.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:45.002][self$createEntryFromContent] Accession numbers: 173077.
biodb.TRACE[2022-10-15 08:05:45.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:45.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:45.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:45.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:45.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:45.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:45.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:45.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:45.008][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:45.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:45.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:45.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:45.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:45.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:45.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:45.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:45.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:45.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:45.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:45.019][private$loadEntries] Creating entries from ids [1]: "365445".
biodb.DEBUG[2022-10-15 08:05:45.020][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:45.021][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365445".
biodb.TRACE[2022-10-15 08:05:45.022][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:45.023][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:45.023][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:45.024][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:45.025][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:45.026][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:45.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:45.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:45.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:45.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:45.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:45.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:45.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:45.035][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.DEBUG[2022-10-15 08:05:45.037][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:45.038][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:45.039][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.TRACE[2022-10-15 08:05:45.820][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445).
biodb.DEBUG[2022-10-15 08:05:46.300][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:46.305][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.content"
biodb.TRACE[2022-10-15 08:05:46.313][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.request"
biodb.TRACE[2022-10-15 08:05:46.320][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365445.xml"
biodb.DEBUG[2022-10-15 08:05:46.323][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:46.334][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:46.335][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:46.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:46.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:46.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:46.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:46.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:46.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:46.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:46.345][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:46.346][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:46.347][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:46.347][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:46.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:46.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:46.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:46.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:46.353][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:46.354][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:46.355][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:46.355][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:46.356][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:46.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:46.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:46.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:46.361][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:46.362][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:46.363][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:46.363][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:46.364][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:46.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:46.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:46.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:46.369][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:46.370][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:46.371][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:46.371][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:46.372][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:46.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:46.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:46.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:46.377][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:46.378][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:46.379][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:46.379][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:46.380][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:46.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:46.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:46.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:46.385][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:46.386][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:46.387][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:46.387][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:46.388][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:46.389][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:46.390][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:46.390][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:46.391][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:46.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:46.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:46.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:46.396][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:46.397][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:46.398][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:46.398][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:46.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:46.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:46.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:46.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:46.404][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:46.405][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:46.405][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:46.406][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:46.407][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:46.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:46.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:46.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:46.412][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:46.413][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:46.413][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:46.414][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:46.415][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:46.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:46.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:46.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:46.420][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:46.421][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:46.421][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:46.422][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:46.423][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:46.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:46.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:46.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:46.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:46.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:46.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:46.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:46.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:46.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:46.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:46.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:46.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:46.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:46.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:46.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:46.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:46.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:46.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:46.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:46.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:46.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:46.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:46.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:46.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:46.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:46.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:46.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:46.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:46.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:46.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:46.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:46.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:46.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:46.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:46.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:46.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:46.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:46.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:46.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:46.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:46.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:46.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:46.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:46.467][self$createEntryFromContent] Accession numbers: 365445.
biodb.TRACE[2022-10-15 08:05:46.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:46.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:46.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:46.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:46.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:46.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:46.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:46.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:46.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:46.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:46.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:46.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:46.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:46.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:46.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:46.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:46.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:46.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:46.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:46.484][private$loadEntries] Creating entries from ids [1]: "32151".
biodb.DEBUG[2022-10-15 08:05:46.485][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:46.486][cch$loadFileContent] Trying to load 1 files from cache: [1]: "32151".
biodb.TRACE[2022-10-15 08:05:46.487][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:46.488][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:46.489][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:46.489][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:46.490][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:46.491][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:46.493][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:46.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:46.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:46.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:46.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:46.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:46.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:46.501][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.DEBUG[2022-10-15 08:05:46.503][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:46.503][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:46.504][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.TRACE[2022-10-15 08:05:46.920][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151).
biodb.DEBUG[2022-10-15 08:05:47.353][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:47.360][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.content"
biodb.TRACE[2022-10-15 08:05:47.370][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.request"
biodb.TRACE[2022-10-15 08:05:47.379][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32151.xml"
biodb.DEBUG[2022-10-15 08:05:47.383][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:47.397][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:47.398][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:47.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:47.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:47.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:47.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:47.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:47.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:47.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:47.412][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:47.413][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:47.413][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:47.414][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:47.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:47.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:47.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:47.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:47.422][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:47.423][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:47.424][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:47.425][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:47.426][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:47.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:47.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:47.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:47.433][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:47.434][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:47.435][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:47.436][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:47.437][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:47.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:47.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:47.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:47.444][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:47.445][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:47.446][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:47.446][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:47.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:47.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:47.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:47.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:47.454][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:47.455][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:47.456][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:47.457][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:47.458][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:47.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:47.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:47.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:47.464][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:47.465][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:47.466][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:47.467][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:47.468][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:47.469][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:47.470][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:47.471][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:47.472][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:47.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:47.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:47.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:47.478][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:47.479][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:47.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:47.481][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:47.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:47.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:47.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:47.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:47.488][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:47.489][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:47.490][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:47.491][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:47.492][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:47.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:47.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:47.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:47.499][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:47.500][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:47.500][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:47.501][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:47.502][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:47.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:47.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:47.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:47.508][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:47.509][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:47.510][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:47.511][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:47.512][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:47.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:47.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:47.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:47.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:47.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:47.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:47.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:47.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:47.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:47.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:47.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:47.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:47.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:47.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:47.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:47.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:47.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:47.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:47.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:47.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:47.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:47.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:47.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:47.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:47.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:47.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:47.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:47.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:47.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:47.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:47.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:47.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:47.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:47.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:47.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:47.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:47.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:47.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:47.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:47.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:47.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:47.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:47.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:47.568][self$createEntryFromContent] Accession numbers: 32151.
biodb.TRACE[2022-10-15 08:05:47.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:47.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:47.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:47.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:47.572][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:47.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:47.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:47.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:47.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:47.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:47.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:47.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:47.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:47.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:47.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:47.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:47.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:47.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:47.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:47.590][private$loadEntries] Creating entries from ids [1]: "67676".
biodb.DEBUG[2022-10-15 08:05:47.591][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:47.593][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67676".
biodb.TRACE[2022-10-15 08:05:47.594][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:47.595][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:47.596][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:47.597][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:47.598][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:47.599][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:47.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:47.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:47.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:47.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:47.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:47.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:47.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:47.612][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.DEBUG[2022-10-15 08:05:47.615][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:47.615][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:47.617][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.TRACE[2022-10-15 08:05:48.046][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676).
biodb.DEBUG[2022-10-15 08:05:48.480][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:48.486][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.content"
biodb.TRACE[2022-10-15 08:05:48.493][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.request"
biodb.TRACE[2022-10-15 08:05:48.500][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67676.xml"
biodb.DEBUG[2022-10-15 08:05:48.503][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:48.514][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:48.514][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:48.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:48.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:48.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:48.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:48.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:48.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:48.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:48.524][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:48.525][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:48.526][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:48.526][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:48.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:48.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:48.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:48.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:48.532][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:48.533][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:48.534][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:48.535][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:48.535][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:48.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:48.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:48.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:48.540][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:48.541][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:48.542][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:48.542][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:48.543][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:48.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:48.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:48.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:48.548][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:48.549][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:48.549][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:48.550][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:48.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:48.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:48.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:48.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:48.555][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:48.556][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:48.557][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:48.558][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:48.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:48.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:48.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:48.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:48.563][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:48.564][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:48.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:48.565][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:48.566][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:48.567][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:48.568][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:48.568][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:48.569][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:48.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:48.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:48.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:48.574][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:48.575][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:48.576][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:48.576][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:48.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:48.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:48.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:48.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:48.582][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:48.583][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:48.583][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:48.584][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:48.585][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:48.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:48.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:48.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:48.590][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:48.590][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:48.591][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:48.592][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:48.593][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:48.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:48.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:48.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:48.597][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:48.598][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:48.599][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:48.600][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:48.600][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:48.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:48.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:48.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:48.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:48.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:48.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:48.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:48.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:48.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:48.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:48.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:48.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:48.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:48.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:48.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:48.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:48.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:48.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:48.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:48.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:48.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:48.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:48.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:48.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:48.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:48.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:48.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:48.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:48.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:48.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:48.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:48.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:48.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:48.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:48.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:48.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:48.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:48.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:48.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:48.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:48.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:48.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:48.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:48.643][self$createEntryFromContent] Accession numbers: 67676.
biodb.TRACE[2022-10-15 08:05:48.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:48.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:48.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:48.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:48.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:48.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:48.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:48.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:48.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:48.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:48.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:48.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:48.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:48.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:48.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:48.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:48.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:48.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:48.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:48.660][private$loadEntries] Creating entries from ids [1]: "69690".
biodb.DEBUG[2022-10-15 08:05:48.661][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:48.662][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69690".
biodb.TRACE[2022-10-15 08:05:48.663][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:48.663][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:48.664][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:48.665][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:48.666][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:48.666][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:48.668][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:48.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:48.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:48.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:48.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:48.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:48.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:48.676][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.DEBUG[2022-10-15 08:05:48.678][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:48.678][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:48.679][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.TRACE[2022-10-15 08:05:49.090][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690).
biodb.DEBUG[2022-10-15 08:05:49.512][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:49.517][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.content"
biodb.TRACE[2022-10-15 08:05:49.525][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.request"
biodb.TRACE[2022-10-15 08:05:49.532][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69690.xml"
biodb.DEBUG[2022-10-15 08:05:49.535][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:49.545][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:49.546][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:49.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:49.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:49.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:49.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:49.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:49.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:49.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:49.556][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:49.557][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:49.557][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:49.558][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:49.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:49.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:49.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:49.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:49.564][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:49.564][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:49.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:49.566][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:49.567][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:49.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:49.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:49.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:49.571][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:49.572][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:49.573][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:49.573][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:49.574][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:49.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:49.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:49.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:49.579][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:49.580][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:49.580][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:49.581][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:49.582][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:49.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:49.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:49.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:49.587][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:49.587][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:49.588][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:49.589][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:49.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:49.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:49.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:49.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:49.594][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:49.595][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:49.596][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:49.596][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:49.597][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:49.598][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:49.599][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:49.599][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:49.600][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:49.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:49.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:49.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:49.605][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:49.605][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:49.606][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:49.607][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:49.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:49.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:49.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:49.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:49.612][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:49.613][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:49.614][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:49.614][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:49.615][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:49.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:49.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:49.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:49.620][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:49.621][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:49.622][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:49.622][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:49.623][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:49.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:49.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:49.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:49.628][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:49.629][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:49.629][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:49.630][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:49.631][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:49.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:49.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:49.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:49.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:49.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:49.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:49.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:49.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:49.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:49.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:49.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:49.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:49.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:49.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:49.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:49.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:49.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:49.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:49.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:49.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:49.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:49.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:49.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:49.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:49.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:49.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:49.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:49.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:49.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:49.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:49.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:49.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:49.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:49.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:49.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:49.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:49.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:49.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:49.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:49.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:49.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:49.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:49.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:49.673][self$createEntryFromContent] Accession numbers: 69690.
biodb.TRACE[2022-10-15 08:05:49.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:49.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:49.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:49.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:49.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:49.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:49.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:49.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:49.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:49.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:49.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:49.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:49.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:49.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:49.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:49.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:49.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:49.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:49.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:49.690][private$loadEntries] Creating entries from ids [1]: "69734".
biodb.DEBUG[2022-10-15 08:05:49.690][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:49.692][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69734".
biodb.TRACE[2022-10-15 08:05:49.692][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:49.693][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:49.694][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:49.695][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:49.696][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:49.696][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:49.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:49.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:49.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:49.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:49.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:49.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:49.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:49.706][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.DEBUG[2022-10-15 08:05:49.708][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:49.708][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:49.709][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.TRACE[2022-10-15 08:05:50.135][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734).
biodb.DEBUG[2022-10-15 08:05:50.579][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:50.589][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.content"
biodb.TRACE[2022-10-15 08:05:50.600][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.request"
biodb.TRACE[2022-10-15 08:05:50.610][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69734.xml"
biodb.DEBUG[2022-10-15 08:05:50.614][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:50.629][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:50.631][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:50.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:50.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:50.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:50.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:50.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:50.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:50.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:50.645][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:50.646][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:50.647][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:50.648][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:50.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:50.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:50.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:50.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:50.657][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:50.658][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:50.659][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:50.660][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:50.661][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:50.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:50.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:50.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:50.668][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:50.669][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:50.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:50.671][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:50.672][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:50.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:50.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:50.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:50.679][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:50.680][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:50.681][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:50.682][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:50.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:50.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:50.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:50.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:50.689][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:50.690][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:50.691][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:50.692][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:50.693][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:50.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:50.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:50.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:50.699][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:50.700][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:50.701][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:50.702][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:50.703][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:50.704][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:50.705][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:50.706][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:50.707][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:50.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:50.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:50.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:50.713][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:50.714][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:50.715][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:50.716][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:50.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:50.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:50.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:50.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:50.724][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:50.725][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:50.725][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:50.726][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:50.728][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:50.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:50.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:50.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:50.734][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:50.735][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:50.736][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:50.737][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:50.738][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:50.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:50.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:50.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:50.744][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:50.745][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:50.746][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:50.747][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:50.748][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:50.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:50.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:50.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:50.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:50.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:50.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:50.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:50.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:50.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:50.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:50.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:50.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:50.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:50.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:50.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:50.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:50.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:50.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:50.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:50.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:50.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:50.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:50.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:50.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:50.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:50.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:50.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:50.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:50.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:50.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:50.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:50.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:50.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:50.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:50.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:50.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:50.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:50.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:50.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:50.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:50.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:50.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:50.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:50.803][self$createEntryFromContent] Accession numbers: 69734.
biodb.TRACE[2022-10-15 08:05:50.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:50.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:50.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:50.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:50.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:50.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:50.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:50.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:50.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:50.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:50.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:50.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:50.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:50.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:50.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:50.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:50.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:50.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:50.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:50.826][private$loadEntries] Creating entries from ids [1]: "79978".
biodb.DEBUG[2022-10-15 08:05:50.827][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:50.828][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79978".
biodb.TRACE[2022-10-15 08:05:50.830][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:50.831][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:50.832][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:50.833][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:50.834][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:50.834][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:50.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:50.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:50.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:50.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:50.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:50.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:50.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:50.847][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.DEBUG[2022-10-15 08:05:50.850][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:50.851][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:50.852][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.TRACE[2022-10-15 08:05:51.260][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978).
biodb.DEBUG[2022-10-15 08:05:51.680][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:51.686][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.content"
biodb.TRACE[2022-10-15 08:05:51.693][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.request"
biodb.TRACE[2022-10-15 08:05:51.700][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79978.xml"
biodb.DEBUG[2022-10-15 08:05:51.703][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:51.714][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:51.714][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:51.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:51.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:51.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:51.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:51.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:51.722][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:51.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:51.724][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:51.725][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:51.726][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.727][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:51.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:51.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:51.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:51.732][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:51.733][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:51.734][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.734][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:51.735][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:51.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:51.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:51.740][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:51.741][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:51.741][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.742][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:51.743][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:51.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:51.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:51.748][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:51.748][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:51.749][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.750][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:51.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:51.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:51.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:51.755][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:51.756][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:51.757][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.758][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:51.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:51.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:51.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:51.763][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:51.764][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:51.765][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.765][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:51.766][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:51.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:51.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:51.771][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:51.772][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:51.772][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.773][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:51.774][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:51.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:51.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:51.778][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:51.779][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:51.780][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.781][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:51.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:51.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:51.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:51.786][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:51.787][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:51.788][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.788][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:51.789][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:51.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:51.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:51.794][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:51.795][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:51.796][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.796][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:51.797][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:51.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:51.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:51.809][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:51.810][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:51.810][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.811][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:51.812][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:51.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:51.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:51.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:51.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:51.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:51.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:51.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:51.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:51.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:51.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:51.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:51.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:51.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:51.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:51.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:51.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:51.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:51.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:51.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:51.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:51.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:51.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:51.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:51.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:51.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:51.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:51.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:51.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:51.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:51.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:51.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:51.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:51.847][self$createEntryFromContent] Accession numbers: 79978.
biodb.TRACE[2022-10-15 08:05:51.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:51.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:51.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:51.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:51.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:51.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:51.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:51.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:51.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:51.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:51.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:51.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:51.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:51.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:51.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:51.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:51.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:51.864][private$loadEntries] Creating entries from ids [1]: "88771".
biodb.DEBUG[2022-10-15 08:05:51.865][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:05:51.866][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88771".
biodb.TRACE[2022-10-15 08:05:51.867][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:05:51.868][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:05:51.868][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:05:51.869][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-10-15 08:05:51.870][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:05:51.871][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:05:51.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:51.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:51.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:51.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:51.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:51.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:51.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:51.880][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.DEBUG[2022-10-15 08:05:51.882][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:05:51.883][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:05:51.884][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.TRACE[2022-10-15 08:05:52.289][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771).
biodb.DEBUG[2022-10-15 08:05:52.705][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:05:52.710][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.content"
biodb.TRACE[2022-10-15 08:05:52.717][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.request"
biodb.TRACE[2022-10-15 08:05:52.724][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88771.xml"
biodb.DEBUG[2022-10-15 08:05:52.727][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:05:52.738][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:05:52.739][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-10-15 08:05:52.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:52.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:52.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:52.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:52.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:52.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:52.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:52.749][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:52.749][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:52.750][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.751][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:52.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:52.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.756][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:52.757][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:52.758][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.759][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.760][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:52.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:52.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.764][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:52.765][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:52.766][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.766][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.767][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:52.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:52.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.772][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:52.773][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:52.773][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.774][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:52.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:52.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.780][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:52.780][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:52.781][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.782][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:52.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:52.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.787][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:52.788][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:52.789][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.789][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.790][ef$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:52.791][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:52.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.792][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.793][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-10-15 08:05:52.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:52.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.798][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:52.799][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:52.799][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.800][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:52.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:52.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.806][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:52.806][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:52.807][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.808][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.809][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:52.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:52.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.813][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:52.821][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:52.822][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.823][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.824][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-10-15 08:05:52.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:52.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.828][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:52.829][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:52.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.831][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.831][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:52.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:52.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:52.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:52.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:52.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:52.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:52.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:52.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:52.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:52.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:52.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:52.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:52.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:52.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:52.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:52.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:52.866][self$createEntryFromContent] Accession numbers: 88771.
biodb.TRACE[2022-10-15 08:05:52.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:52.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:52.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:52.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:52.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:52.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:52.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:52.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:52.876][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:52.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:52.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:52.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:52.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:52.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:52.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:52.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:52.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:52.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:52.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:52.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:52.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:52.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:52.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:52.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:52.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:52.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:52.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:52.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:52.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:52.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:52.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:52.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:52.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:52.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:52.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:52.908][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:05:52.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:52.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:52.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:52.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:52.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:52.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:52.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:52.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.923][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:52.924][private$selectFields]
biodb.TRACE[2022-10-15 08:05:52.924][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:52.925][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:52.926][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:52.926][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.927][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.928][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.929][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.929][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.930][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.931][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.931][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.932][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:52.933][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:52.934][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.934][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.935][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.936][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.936][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:52.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.946][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-10-15 08:05:52.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:52.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:52.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:52.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:52.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:52.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:52.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:52.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.960][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:52.961][private$selectFields]
biodb.TRACE[2022-10-15 08:05:52.961][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:52.962][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:52.963][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:52.964][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.964][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.966][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.966][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.967][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.968][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.969][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.969][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:52.970][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:52.971][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.971][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.972][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.973][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.974][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:52.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.983][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2022-10-15 08:05:52.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:52.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:52.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:52.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:52.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:52.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:52.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:52.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:52.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:52.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:52.997][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:52.998][private$selectFields]
biodb.TRACE[2022-10-15 08:05:52.999][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:52.999][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:53.000][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.001][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.002][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.002][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.003][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.004][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.004][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.005][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.006][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.007][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.007][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.008][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.009][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.010][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.010][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.011][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:53.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.021][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2022-10-15 08:05:53.022][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:05:53.022][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:05:53.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:53.063][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:53.065][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:53.066][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2022-10-15 08:05:53.067][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:53.068][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2022-10-15 08:05:53.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.077][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:53.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:53.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:53.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:53.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:53.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:53.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:53.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:53.136][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:05:53.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:53.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.151][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.152][private$selectFields]
biodb.TRACE[2022-10-15 08:05:53.152][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:53.153][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:53.154][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.154][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.155][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.156][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.157][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.157][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.158][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.159][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.159][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.160][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.161][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.161][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.162][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.163][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.164][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.164][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:53.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.174][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-10-15 08:05:53.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:53.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.188][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.189][private$selectFields]
biodb.TRACE[2022-10-15 08:05:53.189][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:53.190][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:53.191][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.191][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.192][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.193][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.194][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.194][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.195][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.196][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.196][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.197][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.198][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.199][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.199][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.200][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.201][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.201][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:53.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.211][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2022-10-15 08:05:53.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:53.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.225][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.226][private$selectFields]
biodb.TRACE[2022-10-15 08:05:53.227][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:53.227][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:53.228][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.229][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.230][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.230][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.231][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.232][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.232][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.233][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.234][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.235][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.235][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.236][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.237][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.238][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.239][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:53.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.248][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-10-15 08:05:53.249][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:05:53.250][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:05:53.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:53.308][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:53.311][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:53.311][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2022-10-15 08:05:53.312][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:53.313][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2022-10-15 08:05:53.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:53.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:53.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:53.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:53.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:53.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:53.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.369][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:53.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:53.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.390][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:53.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:53.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:53.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:53.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:53.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:53.434][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:05:53.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:53.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.449][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.450][private$selectFields]
biodb.TRACE[2022-10-15 08:05:53.450][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:53.451][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:53.452][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.452][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.453][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.454][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.455][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.455][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.456][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.457][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.457][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.458][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.459][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.460][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.460][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.461][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.462][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.463][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:53.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.473][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2022-10-15 08:05:53.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:53.481][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.492][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.493][private$selectFields]
biodb.TRACE[2022-10-15 08:05:53.494][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:53.494][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:53.495][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.496][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.497][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.497][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.498][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.499][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.499][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.500][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.501][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.501][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.506][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.507][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.508][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.509][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.510][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.510][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:53.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.522][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-10-15 08:05:53.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:53.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.539][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.540][private$selectFields]
biodb.TRACE[2022-10-15 08:05:53.540][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:53.541][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:53.542][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.543][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.544][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.544][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.545][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.546][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.547][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.547][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.548][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.549][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.550][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.551][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.552][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.552][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.553][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.554][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:53.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.564][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2022-10-15 08:05:53.565][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:05:53.566][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:05:53.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:53.608][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:53.610][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:53.611][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365d4ea5e0e90826806fec708da6c9ab".
biodb.TRACE[2022-10-15 08:05:53.612][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:53.613][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.content".
biodb.DEBUG[2022-10-15 08:05:53.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:53.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:53.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:53.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:53.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:53.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:53.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:53.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:53.689][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:05:53.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:53.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.705][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.706][private$selectFields]
biodb.TRACE[2022-10-15 08:05:53.707][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:53.708][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:53.708][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.709][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.710][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.711][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.711][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.712][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.713][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.714][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.715][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.715][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.716][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.717][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.718][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.719][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.719][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.720][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:53.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.731][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2022-10-15 08:05:53.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:53.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.754][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.755][private$selectFields]
biodb.TRACE[2022-10-15 08:05:53.756][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:53.756][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:53.757][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.758][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.758][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.759][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.760][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.761][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.761][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.762][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.763][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.763][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.764][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.765][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.765][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.766][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.767][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.768][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:53.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.777][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-10-15 08:05:53.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.784][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:53.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.791][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.791][private$selectFields]
biodb.TRACE[2022-10-15 08:05:53.792][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:53.793][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:53.793][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.794][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.795][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.796][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.796][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.797][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.798][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.798][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.799][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.800][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.801][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.801][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.802][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.803][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.803][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.804][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:53.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.813][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-10-15 08:05:53.814][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:05:53.815][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:05:53.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:53.851][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:53.853][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:53.854][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7b0416ab2d5cbf869f248000c039a8e8".
biodb.TRACE[2022-10-15 08:05:53.855][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:53.856][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.content".
biodb.DEBUG[2022-10-15 08:05:53.858][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.864][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:53.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:53.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.880][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:53.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:53.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.896][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:53.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:53.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:53.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.917][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:53.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.923][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:53.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:53.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:53.939][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:05:53.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:53.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.953][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.954][private$selectFields]
biodb.TRACE[2022-10-15 08:05:53.955][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:53.955][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:53.956][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.957][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.958][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.958][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.959][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.964][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.965][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.966][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.967][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.968][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.968][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.969][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.970][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.971][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.971][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:53.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.981][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2022-10-15 08:05:53.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:53.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:53.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:53.986][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:53.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:53.987][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:53.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:53.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:53.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:53.994][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.995][private$selectFields]
biodb.TRACE[2022-10-15 08:05:53.996][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:53.996][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:53.997][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:53.998][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.999][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:53.999][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.000][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.001][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.001][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.002][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.003][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.003][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.004][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.005][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.005][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.006][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.007][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.008][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:54.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.017][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2022-10-15 08:05:54.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:54.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:54.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:54.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:54.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:54.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:54.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:54.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.031][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.032][private$selectFields]
biodb.TRACE[2022-10-15 08:05:54.032][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:54.033][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:54.034][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.034][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.035][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.036][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.036][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.037][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.038][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.039][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.039][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.040][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.041][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.041][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.042][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.043][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.043][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.044][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:54.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.054][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2022-10-15 08:05:54.055][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:05:54.055][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:05:54.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:54.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:54.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:54.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:54.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:54.079][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:54.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:54.108][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:54.110][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:54.111][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2022-10-15 08:05:54.112][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:54.113][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2022-10-15 08:05:54.115][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:54.117][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:54.118][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2022-10-15 08:05:54.119][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:54.120][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2022-10-15 08:05:54.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:54.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:54.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:54.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:54.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:54.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:54.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:54.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:54.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:54.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:54.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:54.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:54.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:54.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:54.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:54.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:54.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:54.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:54.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:54.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:54.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:54.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:54.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:54.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:54.171][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:05:54.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:54.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:54.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:54.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:54.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:54.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:54.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:54.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.191][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.191][private$selectFields]
biodb.TRACE[2022-10-15 08:05:54.192][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:54.193][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:54.193][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.194][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.195][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.196][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.196][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.197][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.198][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.198][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.199][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.200][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.200][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.201][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.202][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.203][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.203][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.204][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:54.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.214][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-10-15 08:05:54.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:54.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:54.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:54.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:54.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:54.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:54.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:54.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.228][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.228][private$selectFields]
biodb.TRACE[2022-10-15 08:05:54.229][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:54.230][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:54.230][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.231][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.232][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.233][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.234][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.235][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.235][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.236][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.237][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.237][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.238][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.239][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.239][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.240][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.241][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:54.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.250][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-10-15 08:05:54.251][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:54.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:54.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:54.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:54.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:54.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:54.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:54.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.264][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.265][private$selectFields]
biodb.TRACE[2022-10-15 08:05:54.266][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:54.266][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:54.267][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.268][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.268][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.269][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.270][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.271][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.271][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.272][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.273][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.273][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.274][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.275][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.276][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.276][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.277][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.278][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:54.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.287][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-10-15 08:05:54.288][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:05:54.289][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:05:54.290][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:54.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:54.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:54.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:54.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:54.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:54.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:54.325][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:54.327][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:54.328][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2022-10-15 08:05:54.329][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:54.330][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2022-10-15 08:05:54.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:54.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:54.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:54.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:54.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:54.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:54.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:54.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:54.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:54.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:54.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:54.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:54.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:54.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:54.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:54.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:54.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:54.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:54.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:54.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:54.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:54.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:54.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:54.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:54.381][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:05:54.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:54.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:54.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:54.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:54.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:54.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:54.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:54.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.395][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.396][private$selectFields]
biodb.TRACE[2022-10-15 08:05:54.397][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:54.397][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:54.398][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.399][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.399][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.404][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.405][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.406][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.407][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.407][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.408][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.409][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.410][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.410][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.411][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.412][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.412][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.413][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:54.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.423][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-10-15 08:05:54.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:54.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:54.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:54.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:54.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:54.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:54.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:54.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.436][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.437][private$selectFields]
biodb.TRACE[2022-10-15 08:05:54.438][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:54.438][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:54.439][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.440][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.440][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.441][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.442][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.442][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.443][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.444][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.445][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.445][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.446][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.447][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.447][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.448][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.449][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.449][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:54.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.459][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2022-10-15 08:05:54.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:54.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:54.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:54.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:54.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:54.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:54.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:54.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.473][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.473][private$selectFields]
biodb.TRACE[2022-10-15 08:05:54.474][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:54.475][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:54.476][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.476][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.477][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.478][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.478][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.479][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.480][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.481][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.481][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.482][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.483][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.483][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.484][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.485][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.486][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.486][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:54.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.496][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2022-10-15 08:05:54.497][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:05:54.498][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:05:54.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:54.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:54.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:54.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:54.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:54.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:54.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:54.535][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:54.537][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:54.538][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2022-10-15 08:05:54.539][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:54.540][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2022-10-15 08:05:54.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:54.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:54.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:54.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:54.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:54.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:54.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:54.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.552][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:54.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:54.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:54.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:54.563][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:54.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:54.564][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:54.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:54.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.568][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:54.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:54.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:54.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:54.579][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:54.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:54.580][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:54.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:54.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.585][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:54.590][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:05:54.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:54.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:54.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:54.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:54.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:54.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:54.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:54.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.605][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.606][private$selectFields]
biodb.TRACE[2022-10-15 08:05:54.606][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:54.607][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:54.608][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.608][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.609][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.610][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.611][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.611][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.612][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.613][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.613][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.614][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.615][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.616][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.616][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.617][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.618][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.619][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:54.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.633][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-10-15 08:05:54.633][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:54.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:54.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:54.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:54.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:54.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:54.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:54.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.647][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.647][private$selectFields]
biodb.TRACE[2022-10-15 08:05:54.648][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:54.649][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:54.649][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.650][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.651][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.652][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.652][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.653][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.654][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.655][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.656][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.656][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.657][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.658][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.659][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.659][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.660][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:54.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.669][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2022-10-15 08:05:54.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:54.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:54.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:54.675][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:54.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:54.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:54.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:54.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.683][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.684][private$selectFields]
biodb.TRACE[2022-10-15 08:05:54.684][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:54.685][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:54.686][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.687][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.687][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.688][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.689][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.689][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.690][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.691][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.691][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.692][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.693][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.694][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.694][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.695][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.696][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.696][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:54.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.706][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2022-10-15 08:05:54.707][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:05:54.707][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:05:54.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:54.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:54.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:54.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:54.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:54.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:54.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:54.760][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:54.762][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:54.763][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26eec570aadd234892b573eb0777bd78".
biodb.TRACE[2022-10-15 08:05:54.764][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:54.765][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.content".
biodb.DEBUG[2022-10-15 08:05:54.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:54.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:54.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:54.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:54.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:54.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:54.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:54.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:54.783][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:54.784][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:54.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:54.788][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:54.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:54.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:54.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:54.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:54.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:54.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:54.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:54.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:54.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:54.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:54.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:54.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:54.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:54.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:54.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:54.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:54.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:54.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:54.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:54.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:54.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:54.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:54.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:54.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:54.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:54.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:54.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:54.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:54.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:54.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:54.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:54.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:54.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:54.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:54.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:54.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:54.868][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:54.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:54.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:54.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:54.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:54.874][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:54.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:54.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:54.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:54.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:54.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:54.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:54.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:54.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:54.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:54.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.897][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:54.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:54.900][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:05:54.901][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:54.902][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:54.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:54.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:54.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:54.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:54.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:54.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.915][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.915][private$selectFields]
biodb.TRACE[2022-10-15 08:05:54.916][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:54.917][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:54.918][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.918][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.919][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.920][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.921][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.921][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.922][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.923][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.923][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.924][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.925][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.926][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.926][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.927][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.928][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.929][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:54.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.939][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-10-15 08:05:54.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:54.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:54.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:54.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:54.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:54.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:54.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:54.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.953][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.954][private$selectFields]
biodb.TRACE[2022-10-15 08:05:54.955][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:54.956][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:54.956][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.957][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.958][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.959][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.959][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.960][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.961][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.961][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.962][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.963][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.964][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.964][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.965][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.966][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.967][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.967][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:54.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.977][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-10-15 08:05:54.978][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:54.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:54.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:54.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:54.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:54.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:54.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:54.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.992][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.993][private$selectFields]
biodb.TRACE[2022-10-15 08:05:54.993][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:54.994][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:54.995][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:54.995][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.996][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.997][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:54.998][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:54.998][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:54.999][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.000][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.001][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.001][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:55.002][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:55.003][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.004][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.004][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.005][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.006][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:55.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.016][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-10-15 08:05:55.016][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:05:55.017][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:05:55.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:55.055][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:55.057][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:55.058][cch$loadFileContent] Trying to load 1 files from cache: [1]: "20c224089a82bbffabd2e7dbc67cfae3".
biodb.TRACE[2022-10-15 08:05:55.059][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:55.060][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.content".
biodb.DEBUG[2022-10-15 08:05:55.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.075][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:55.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:55.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:55.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:55.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:55.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:55.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.176][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:55.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:55.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:55.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:55.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:55.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:55.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:55.290][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:55.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:55.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:55.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:55.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:55.371][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:55.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:55.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:55.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:55.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:55.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:55.468][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:55.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:55.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.501][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:55.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:55.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.539][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.552][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:55.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.568][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:55.571][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:05:55.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.585][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:55.586][private$selectFields]
biodb.TRACE[2022-10-15 08:05:55.586][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:55.587][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:55.588][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:55.589][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.589][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.590][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.591][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.591][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.592][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.593][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.594][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.594][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:55.595][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:55.596][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.596][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.597][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.598][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.599][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:55.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.608][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-10-15 08:05:55.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.622][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:55.623][private$selectFields]
biodb.TRACE[2022-10-15 08:05:55.624][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:55.625][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:55.625][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:55.626][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.627][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.627][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.628][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.629][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.630][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.630][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.631][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.632][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:55.632][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:55.633][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.634][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.635][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.635][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.636][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:55.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.646][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2022-10-15 08:05:55.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.660][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:55.660][private$selectFields]
biodb.TRACE[2022-10-15 08:05:55.661][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:55.662][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:55.662][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:55.663][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.664][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.666][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.667][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.669][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.670][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.672][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.673][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.675][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:55.676][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:55.678][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.680][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.681][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.683][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.685][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:55.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.698][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2022-10-15 08:05:55.699][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:05:55.700][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:05:55.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.702][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:55.748][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:55.751][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:55.752][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2022-10-15 08:05:55.753][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:55.755][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2022-10-15 08:05:55.765][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:55.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:55.809][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:55.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:55.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:55.853][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:05:55.855][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.872][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:55.873][private$selectFields]
biodb.TRACE[2022-10-15 08:05:55.874][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:55.875][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:55.876][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:55.877][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.878][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.879][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.880][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.881][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.882][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.883][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.884][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.885][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:55.886][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:55.887][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.888][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.889][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.890][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.891][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:55.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.904][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-10-15 08:05:55.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.923][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:55.924][private$selectFields]
biodb.TRACE[2022-10-15 08:05:55.925][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:55.926][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:55.927][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:55.928][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.929][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.929][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.930][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.931][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.932][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.933][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.934][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.935][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:55.936][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:55.937][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.938][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.939][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.940][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.940][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:55.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.953][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2022-10-15 08:05:55.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:55.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:55.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:55.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:55.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:55.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:55.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:55.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.971][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:55.972][private$selectFields]
biodb.TRACE[2022-10-15 08:05:55.973][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:55.974][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:55.974][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:55.975][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.976][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.977][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.978][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.979][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.980][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.981][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.981][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.982][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:55.983][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-10-15 08:05:55.984][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.985][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.986][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.987][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.988][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-10-15 08:05:55.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:55.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:55.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:55.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.001][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-10-15 08:05:56.002][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:05:56.003][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-10-15 08:05:56.018][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:05:56.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:05:56.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.021][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:05:56.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:05:56.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.024][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:05:56.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:05:56.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-10-15 08:05:56.028][biodb::testThat]
biodb.INFO [2022-10-15 08:05:56.029][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2022-10-15 08:05:56.029][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:05:56.030][biodb::testThat]
biodb.TRACE[2022-10-15 08:05:56.033][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:05:56.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:05:56.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.036][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:05:56.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:05:56.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.039][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:05:56.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:05:56.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:56.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:56.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:56.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:56.096][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:56.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:56.097][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:56.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:56.126][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:56.128][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:56.129][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2022-10-15 08:05:56.130][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:56.131][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2022-10-15 08:05:56.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:56.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:56.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:56.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:56.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:56.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:56.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:56.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:56.149][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:56.152][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:56.152][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2022-10-15 08:05:56.153][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:56.154][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2022-10-15 08:05:56.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:56.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:56.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:56.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:56.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:56.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:56.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:56.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:56.173][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:56.175][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:56.176][cch$loadFileContent] Trying to load 1 files from cache: [1]: "94c7655c8f372fb2982c15119402bcba".
biodb.TRACE[2022-10-15 08:05:56.177][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:56.178][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content".
biodb.DEBUG[2022-10-15 08:05:56.180][private$bdb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:05:56.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:56.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:56.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:56.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:56.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:56.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:56.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:56.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:56.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:56.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:56.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:56.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.194][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:56.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:56.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.197][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:56.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:56.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.206][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:56.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:56.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.209][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:56.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:56.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.212][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:56.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:56.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.215][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:56.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:56.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.223][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:56.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:56.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.226][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:56.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:56.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.241][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.244][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.247][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:56.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:56.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.249][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:56.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:56.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.252][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:56.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:56.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.255][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:56.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:56.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.258][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:05:56.259][private$selectFields]
biodb.TRACE[2022-10-15 08:05:56.260][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:56.260][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:56.261][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:05:56.262][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:56.262][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:56.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.264][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.265][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:56.265][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:56.266][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.267][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.267][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.268][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.269][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.270][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.270][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:56.271][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:56.272][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.273][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.273][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:56.274][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:56.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.280][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.281][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.282][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.282][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.283][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.284][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:56.285][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:56.285][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.286][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.287][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.288][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.288][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.289][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.290][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.291][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.291][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.292][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.293][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.293][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.294][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.295][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.296][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:56.296][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:56.297][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.298][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.298][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:56.299][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:56.300][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.300][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.301][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:56.302][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:56.303][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.303][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.304][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:56.305][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:56.306][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.306][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.307][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.308][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.308][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.309][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.310][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:56.310][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:56.311][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.312][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.313][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:56.313][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:56.314][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.315][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.315][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.316][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.317][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.317][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.318][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:56.319][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:56.320][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.320][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.321][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.322][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.322][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.323][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.324][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.324][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.325][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.326][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.327][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.327][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.328][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.329][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.329][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:56.330][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:56.331][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.332][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.332][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:56.333][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:56.334][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.334][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.335][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-10-15 08:05:56.336][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-10-15 08:05:56.337][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:56.337][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:56.338][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.339][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.339][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:56.340][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:56.341][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.342][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.342][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.343][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.344][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.344][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.345][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:56.346][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:56.347][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.347][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.348][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:56.349][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:56.349][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.350][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.351][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.351][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.352][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.353][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.354][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.354][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.355][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.356][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.356][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.357][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.358][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.359][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.359][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.360][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.361][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.361][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.362][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:56.363][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:56.364][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.364][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.365][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:56.366][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:56.366][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.367][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.368][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-10-15 08:05:56.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:56.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:56.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:56.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:56.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:56.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:56.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.378][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:56.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:56.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.380][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:56.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:56.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.383][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:56.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:56.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.395][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:56.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:56.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.398][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:56.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:56.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.401][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:56.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:56.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:56.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:56.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:56.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:56.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:56.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:56.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.416][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.439][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.442][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.445][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.448][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:56.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:56.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.451][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:56.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:56.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.454][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:56.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:56.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.457][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:56.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:56.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.460][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:56.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:56.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.463][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:56.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:56.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.471][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2022-10-15 08:05:56.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:56.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:56.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:56.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:56.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:56.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:56.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:56.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:56.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:56.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:56.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:56.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.486][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:56.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:56.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.489][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:56.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:56.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.498][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:56.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:56.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.501][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:56.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:56.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.508][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:56.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:56.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:56.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:56.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.520][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:56.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:56.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.523][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:56.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:56.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.538][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.541][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.544][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:56.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:56.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.547][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:56.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:56.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.550][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:56.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:56.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.552][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:56.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:56.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.555][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:05:56.556][private$selectFields]
biodb.TRACE[2022-10-15 08:05:56.557][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:56.557][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:56.558][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:05:56.559][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:56.560][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:56.560][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.561][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.562][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:56.563][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:56.563][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.564][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.565][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.566][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.566][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.567][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.568][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:56.568][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:56.569][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.570][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.570][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:56.571][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:56.572][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.573][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.573][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.574][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.575][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.575][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.576][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:56.577][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:56.578][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.578][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.579][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.580][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.581][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.582][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.583][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.583][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.584][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.585][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.586][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.586][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.587][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.588][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:56.588][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:56.589][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.590][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.591][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:56.591][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:56.592][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.593][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.593][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:56.594][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:56.595][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.596][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.596][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:56.597][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:56.598][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.598][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.599][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.600][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.601][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.601][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.602][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:56.603][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:56.604][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.604][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.605][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:56.606][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:56.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.607][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.608][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.609][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.610][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.610][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.611][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:56.612][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:56.612][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.613][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.614][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.615][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.615][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.616][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.617][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.618][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.619][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.620][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.620][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.621][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.622][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.623][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:56.623][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:56.624][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.625][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.625][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:56.626][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:56.627][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.628][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.628][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:05:56.629][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:05:56.630][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:56.631][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:56.631][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.632][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.633][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:56.633][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:56.634][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.635][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.636][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.636][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.637][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.638][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.638][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:56.639][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:56.640][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.641][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.641][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:56.642][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:56.643][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.643][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.644][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.645][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.646][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.646][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.647][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:56.648][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:56.648][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.649][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.650][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.651][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.651][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.652][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.653][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.653][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.655][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.656][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.656][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.657][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.658][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.658][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:56.659][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:56.660][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.661][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.661][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:56.662][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:56.663][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.663][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.664][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-10-15 08:05:56.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:56.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:56.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:56.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:56.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:56.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:56.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.674][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:56.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:56.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.677][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:56.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:56.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.680][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:56.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:56.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.692][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:56.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:56.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.695][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:56.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:56.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.698][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:56.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:56.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:56.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:56.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.704][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:56.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:56.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:56.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:56.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.710][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.716][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.719][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:56.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:56.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.722][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:56.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:56.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.725][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:56.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:56.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.731][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.738][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.751][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.754][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.757][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.760][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:56.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:56.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.763][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:56.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:56.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.766][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:56.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:56.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.769][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:56.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:56.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.772][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:56.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:56.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.775][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:56.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:56.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.782][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2022-10-15 08:05:56.782][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:05:56.783][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:05:56.785][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:56.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:56.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:56.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:56.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:56.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:56.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:56.821][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:56.823][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:56.824][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2022-10-15 08:05:56.825][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:56.826][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2022-10-15 08:05:56.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:56.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:56.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:56.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:56.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:56.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:56.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:56.836][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:56.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:56.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:56.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:56.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:56.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:56.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:56.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:56.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:56.863][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:56.865][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:56.866][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2022-10-15 08:05:56.867][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:56.868][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2022-10-15 08:05:56.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:56.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:56.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:56.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:56.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:56.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:56.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:56.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:56.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:56.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:56.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:56.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:56.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:56.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:56.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:56.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:56.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:56.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:56.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:56.908][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:56.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:56.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:56.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:56.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:56.920][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:05:56.921][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:56.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:56.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:56.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:56.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:56.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:56.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:56.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:56.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:56.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:56.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:56.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.934][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:56.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:56.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.937][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:56.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:56.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:56.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.946][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:56.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:56.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.949][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:56.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:56.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.952][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:56.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:56.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.954][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:56.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:56.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.957][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.965][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:56.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.968][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:56.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:56.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.971][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:56.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:56.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:56.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:56.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.986][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.989][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:56.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.992][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:56.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:56.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.995][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:56.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:56.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:56.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:56.997][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:56.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:56.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.000][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:57.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:57.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.003][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:05:57.004][private$selectFields]
biodb.TRACE[2022-10-15 08:05:57.004][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:57.005][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:57.006][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:05:57.007][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:57.007][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:57.008][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.009][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.009][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:57.010][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:57.011][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.011][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.012][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.013][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.014][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.014][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.015][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:57.016][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:57.016][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.017][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.018][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:57.019][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:57.019][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.020][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.021][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.021][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.022][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.023][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.024][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.024][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.025][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.026][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.026][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.027][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.028][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.028][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.029][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.030][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.031][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.031][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.032][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.033][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.033][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.034][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.035][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:57.036][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:57.036][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.037][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.038][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:57.038][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:57.039][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.040][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.041][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:57.041][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:57.042][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.043][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.043][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:57.044][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:57.045][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.045][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.046][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.047][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.048][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.048][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.049][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:57.050][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:57.051][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.051][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.052][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:57.053][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:57.053][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.054][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.055][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.056][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.056][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.057][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.058][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.059][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.059][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.060][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.061][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.061][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.062][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.063][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.064][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.064][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.065][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.066][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.067][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.067][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.068][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.069][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.069][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:57.070][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:57.071][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.072][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.072][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:57.073][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:57.074][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.074][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.075][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:05:57.076][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:05:57.077][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:57.077][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:57.078][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.079][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.079][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:57.080][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:57.081][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.082][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.082][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.083][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.084][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.084][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.085][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:57.086][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:57.087][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.087][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.088][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:57.089][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:57.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.090][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.091][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.092][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.092][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.093][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.094][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.094][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.095][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.096][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.097][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.097][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.098][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.099][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.099][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.100][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.101][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.102][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.102][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.103][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.104][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.104][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.105][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:57.106][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:57.107][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.107][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.108][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:57.109][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:57.109][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.110][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.111][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-10-15 08:05:57.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:57.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:57.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:57.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:57.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:57.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:57.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.120][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:57.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:57.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.123][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:57.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:57.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.126][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:57.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:57.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.138][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:57.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:57.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.141][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:57.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:57.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.144][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:57.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:57.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.147][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:57.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:57.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.150][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:57.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:57.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:57.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:57.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.156][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.161][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.164][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.167][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.170][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.196][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.199][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.202][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.204][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:57.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:57.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.207][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:57.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:57.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.210][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:57.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:57.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.213][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:57.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:57.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.216][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:57.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:57.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.219][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:57.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:57.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.226][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2022-10-15 08:05:57.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:57.227][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:57.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:57.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:57.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:57.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:57.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:57.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:57.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:57.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:57.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:57.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.240][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:57.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:57.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.243][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:57.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:57.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.252][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:57.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:57.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.254][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:57.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:57.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.257][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:57.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:57.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.260][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:57.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:57.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.266][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.269][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.272][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.286][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.289][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.292][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:57.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:57.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.295][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:57.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:57.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.298][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:57.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:57.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.301][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:57.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:57.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.304][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:05:57.304][private$selectFields]
biodb.TRACE[2022-10-15 08:05:57.305][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:57.306][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:57.306][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:05:57.307][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:57.308][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:57.309][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.309][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.310][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:57.311][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:57.312][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.312][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.313][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.314][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.314][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.315][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.316][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:57.316][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:57.317][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.318][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.319][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:57.319][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:57.320][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.321][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.321][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.322][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.323][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.324][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.324][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.325][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.326][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.327][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.328][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.329][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.329][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.330][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.331][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.332][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.332][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.333][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.334][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.334][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.335][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.336][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:57.337][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:57.337][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.338][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.339][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:57.340][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:57.340][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.341][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.342][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:57.342][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:57.343][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.344][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.345][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:57.345][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:57.346][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.347][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.347][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.348][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.349][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.350][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.350][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:57.351][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:57.352][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.353][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.353][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:57.354][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:57.355][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.355][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.356][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.357][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.358][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.358][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.359][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.360][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.361][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.361][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.362][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.363][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.363][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.364][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.365][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.366][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.366][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.367][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.368][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.368][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.369][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.370][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.371][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:57.371][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:57.372][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.373][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.374][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:57.374][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:57.375][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.376][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.376][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:05:57.377][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:05:57.378][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:57.379][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:57.379][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.380][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.381][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:57.382][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:57.382][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.383][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.384][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.384][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.385][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.386][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.387][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:57.387][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:57.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.389][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.389][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:57.390][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:57.391][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.392][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.392][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.393][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.394][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.395][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.395][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.396][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.397][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.397][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.398][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.399][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.400][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.400][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.401][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.402][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.403][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.403][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.404][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.405][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.406][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.406][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.407][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:57.408][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:57.408][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.409][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.410][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:57.411][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:57.415][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.416][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.417][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-10-15 08:05:57.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:57.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:57.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:57.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:57.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:57.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:57.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.427][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:57.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:57.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.430][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:57.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:57.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.433][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:57.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:57.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.445][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:57.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:57.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.448][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:57.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:57.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.450][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:57.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:57.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.453][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:57.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:57.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.456][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:57.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:57.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.459][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:57.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:57.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.465][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.468][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.471][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.474][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.477][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.491][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.497][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.500][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.503][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.506][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:57.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:57.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.509][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:57.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:57.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.512][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:57.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:57.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.515][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:57.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:57.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.518][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:57.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:57.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.521][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:57.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:57.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.528][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2022-10-15 08:05:57.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:57.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:57.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:57.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:57.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:57.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:57.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:57.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:57.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:57.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:57.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:57.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.542][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:57.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:57.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.545][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:57.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:57.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.554][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:57.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:57.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.557][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:57.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:57.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:57.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:57.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.563][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:57.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:57.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.569][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.572][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.575][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.590][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.592][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.595][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:57.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:57.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.598][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:57.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:57.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.601][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:57.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:57.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.604][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:57.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:57.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.607][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:05:57.608][private$selectFields]
biodb.TRACE[2022-10-15 08:05:57.609][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:57.609][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:57.610][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:05:57.611][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:57.612][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:57.612][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.613][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.614][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:57.614][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:57.615][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.616][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.617][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.617][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.619][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.620][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:57.620][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:57.621][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.622][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.623][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:57.623][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:57.624][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.625][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.625][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.626][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.627][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.628][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.628][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.629][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.630][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.631][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.631][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.632][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.633][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.634][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.634][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.635][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.636][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.637][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.637][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.638][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.639][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.644][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.645][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:57.646][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:57.647][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.648][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.648][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:57.649][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:57.650][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.650][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.651][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:57.652][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:57.653][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.653][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.654][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:57.655][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:57.656][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.656][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.657][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.658][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.659][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.659][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.660][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:57.661][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:57.661][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.662][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.663][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:57.664][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:57.664][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.665][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.666][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.667][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.667][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.668][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.669][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.669][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:57.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.671][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.672][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.672][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.673][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.674][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.674][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.675][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.676][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.677][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.677][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.678][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.679][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.679][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.680][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:57.681][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:57.681][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.682][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.683][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:57.684][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:57.684][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.685][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.686][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-10-15 08:05:57.687][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-10-15 08:05:57.687][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:57.688][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:57.689][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.689][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.690][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:57.691][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:57.692][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.692][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.693][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.694][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.694][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.695][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.696][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:57.697][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:57.697][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.698][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.699][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:57.700][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:57.700][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.701][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.702][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.702][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.703][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.704][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.705][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.705][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.706][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.707][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.707][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.708][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.709][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.710][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.710][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.711][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.712][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.712][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.713][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:57.714][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:57.715][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.715][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.716][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:57.717][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:57.717][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.718][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.719][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-10-15 08:05:57.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:57.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:57.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:57.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:57.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:57.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:57.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.728][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:57.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:57.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.731][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:57.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:57.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.734][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:57.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:57.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:57.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.746][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:57.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:57.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.749][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:57.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:57.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.752][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:57.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:57.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.755][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:57.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:57.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:57.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:57.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.761][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:57.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:57.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.764][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.767][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.770][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:57.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.787][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:57.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.790][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.793][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.796][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:57.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.799][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:57.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:57.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.802][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:57.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:57.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.805][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:57.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:57.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.808][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:57.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:57.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.811][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:57.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:57.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.814][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:57.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:57.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.820][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2022-10-15 08:05:57.821][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:05:57.822][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:05:57.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:57.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:57.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:57.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:57.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:57.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:57.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:57.859][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:57.862][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:57.863][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2022-10-15 08:05:57.864][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:57.869][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2022-10-15 08:05:57.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:57.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:57.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:57.876][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:57.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:57.878][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:57.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:57.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:57.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:57.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:57.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:57.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:57.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:57.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:57.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:57.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:57.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:57.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:57.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:57.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:57.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:57.910][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:57.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:57.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:57.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:57.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:57.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:57.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:57.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:57.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:57.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:57.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:57.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:57.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:57.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:57.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:57.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:57.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:57.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:57.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:57.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:57.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:57.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:57.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:57.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:57.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:57.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:57.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:57.969][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:57.970][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:57.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:57.974][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:57.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:57.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:57.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:57.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:57.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:57.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:57.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:57.986][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:57.988][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:57.989][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2022-10-15 08:05:57.990][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:57.991][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2022-10-15 08:05:57.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:57.994][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:57.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:57.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:57.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:57.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:58.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:58.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:58.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:58.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:58.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:58.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:58.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:58.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:58.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:58.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:58.026][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:58.029][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:58.029][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dd9d19fb78fcc7453eff2e9dd7ba5702".
biodb.TRACE[2022-10-15 08:05:58.030][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:58.031][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.content".
biodb.DEBUG[2022-10-15 08:05:58.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:58.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:58.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:58.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:58.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:58.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:58.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:58.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:58.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:58.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:58.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:58.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:58.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:58.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:58.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:58.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:58.067][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:05:58.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:58.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:58.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:58.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:58.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:58.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:58.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:58.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:58.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:58.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:58.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:58.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.082][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:58.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:58.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.085][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:58.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:58.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.099][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:58.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:58.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.102][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:58.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:58.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:58.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:58.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.107][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:58.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:58.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.113][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.116][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.119][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.133][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.136][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.139][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:58.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:58.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.141][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:58.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:58.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.144][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:58.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:58.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.147][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:58.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:58.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.150][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:05:58.151][private$selectFields]
biodb.TRACE[2022-10-15 08:05:58.151][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:58.152][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:58.153][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:05:58.154][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:58.154][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:58.155][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.156][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.156][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:58.157][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:58.158][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.158][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.159][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.160][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.161][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.161][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.162][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:58.163][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:58.164][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.164][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.165][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:58.166][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:58.166][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.167][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.168][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.168][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.169][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.170][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.171][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.171][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.172][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.173][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.173][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.174][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.175][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.176][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.176][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.177][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.178][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.178][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.179][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.180][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.181][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.181][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.182][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:58.183][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:58.184][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.184][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.185][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:58.186][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:58.187][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.187][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.188][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:58.189][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:58.189][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.190][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.191][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:58.192][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:58.192][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.193][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.194][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.195][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.195][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.196][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.197][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:58.197][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:58.198][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.199][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.200][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:58.200][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:58.201][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.202][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.202][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.203][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.204][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.205][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.205][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.206][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.207][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.207][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.208][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.209][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.210][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.210][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.211][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.212][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.213][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.213][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.214][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.215][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.215][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.216][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.217][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:58.218][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:58.218][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.219][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.220][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:58.220][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:58.221][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.222][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.223][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:05:58.223][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:05:58.224][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:58.225][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:58.225][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.226][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.227][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:58.228][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:58.228][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.229][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.230][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.230][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.231][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.232][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.233][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:58.233][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:58.234][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.235][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.235][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:58.236][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:58.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.238][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.238][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.239][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.240][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.240][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.241][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.242][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.243][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.243][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.244][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.245][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.246][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.246][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.247][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.248][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.248][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.249][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.250][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.251][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.251][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.252][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.253][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:58.253][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:58.254][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.255][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.255][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:58.256][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:58.257][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.258][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.258][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-10-15 08:05:58.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:58.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:58.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:58.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:58.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:58.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:58.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.268][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:58.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:58.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.271][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:58.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:58.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.274][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:58.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:58.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.286][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:58.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:58.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.289][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:58.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:58.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.291][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:58.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:58.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.294][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:58.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:58.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.297][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:58.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:58.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:58.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:58.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.306][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.309][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.317][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.320][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.323][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.344][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.347][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.350][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.352][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:58.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:58.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.355][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:58.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:58.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.358][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:58.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:58.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.361][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:58.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:58.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.364][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:58.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:58.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.367][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:58.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:58.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.374][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2022-10-15 08:05:58.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:58.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:58.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:58.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:58.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:58.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:58.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:58.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:58.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:58.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:58.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:58.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.388][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:58.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:58.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.391][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:58.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:58.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.400][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:58.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:58.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.403][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:58.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:58.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:58.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:58.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:58.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:58.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.412][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.415][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.418][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.421][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.436][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.439][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.442][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:58.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:58.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.445][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:58.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:58.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.448][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:58.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:58.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:58.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:58.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.454][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:05:58.455][private$selectFields]
biodb.TRACE[2022-10-15 08:05:58.456][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:58.457][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:58.457][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:05:58.458][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:58.459][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:58.460][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.460][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.461][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:58.462][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:58.462][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.463][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.464][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.465][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.465][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.466][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.467][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:58.468][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:58.468][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.469][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.470][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:58.471][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:58.471][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.472][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.473][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.474][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.474][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.475][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.476][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.477][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.477][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.478][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.479][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.480][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.481][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.482][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.483][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.483][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.484][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.485][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.485][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.486][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.487][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.488][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:58.488][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:58.489][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.490][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.491][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:58.491][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:58.492][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.493][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.494][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:58.494][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:58.495][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.496][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.497][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:58.497][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:58.498][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.499][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.500][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.500][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.501][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.502][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.503][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:58.503][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:58.504][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.505][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.505][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:58.506][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:58.507][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.508][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.508][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.509][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.510][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.511][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.511][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.512][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.513][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.514][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.514][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.515][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.516][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.517][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.517][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.518][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.519][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.520][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.520][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.521][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.522][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.522][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.523][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:58.524][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:58.525][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.525][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.526][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:58.527][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:58.528][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.528][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.529][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-10-15 08:05:58.530][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-10-15 08:05:58.531][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:58.531][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:58.532][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.533][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.534][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:58.535][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:58.535][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.536][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.537][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.538][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.538][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.539][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.540][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:58.540][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:58.545][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.546][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.547][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:58.548][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:58.549][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.550][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.551][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.551][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.552][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.553][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.554][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.554][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.555][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.556][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.557][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.557][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.558][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.559][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.560][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.560][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.561][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.562][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.563][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:58.563][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:58.564][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.565][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.565][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:58.566][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:58.567][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.568][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.568][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-10-15 08:05:58.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:58.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:58.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:58.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:58.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:58.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:58.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.578][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:58.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:58.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.581][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:58.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:58.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.584][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:58.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:58.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.596][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:58.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:58.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.599][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:58.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:58.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.602][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:58.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:58.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.605][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:58.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:58.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:58.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:58.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:58.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:58.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.614][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.641][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.644][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.647][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.650][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:58.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:58.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.653][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:58.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:58.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.656][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:58.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:58.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.659][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:58.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:58.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.662][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:58.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:58.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.665][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:58.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:58.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.672][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2022-10-15 08:05:58.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:58.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:58.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:58.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:58.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:58.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:58.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:58.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:58.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:58.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:58.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:58.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.686][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:58.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:58.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.689][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:58.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:58.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.698][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:58.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:58.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.701][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:58.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:58.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.704][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:58.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:58.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:58.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:58.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.710][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.715][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.718][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.733][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.736][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.739][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:58.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:58.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.742][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:58.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:58.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.745][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:58.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:58.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.747][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:58.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:58.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.750][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:05:58.751][private$selectFields]
biodb.TRACE[2022-10-15 08:05:58.752][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:58.753][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:58.753][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:05:58.754][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:58.755][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:58.755][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.756][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.757][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:58.758][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:58.758][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.759][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.760][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.761][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.761][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.762][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.763][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:58.763][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:58.764][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.765][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.766][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:58.766][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:58.767][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.768][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.768][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.769][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.770][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.775][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.776][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.777][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.778][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.778][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.779][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.780][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.781][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.781][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.782][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.783][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.784][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.784][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.785][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.786][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.787][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.787][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.788][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:58.789][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:58.789][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.790][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.791][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:58.792][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:58.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.793][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.794][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:58.794][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:58.795][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.796][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.796][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:58.797][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:58.798][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.799][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.799][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.800][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.801][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.802][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.802][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:58.803][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:58.804][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.804][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.805][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:58.806][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:58.806][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.807][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.808][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.809][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.809][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.810][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.811][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.811][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.812][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.813][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.814][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.814][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.815][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.816][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.816][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.817][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.818][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.818][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.819][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.820][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.821][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.821][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.822][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:58.823][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:58.823][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.824][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.825][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:58.826][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:58.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.827][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.828][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:05:58.828][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:05:58.829][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:58.830][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:58.831][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.831][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.832][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:58.833][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:58.833][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.834][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.835][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.835][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.836][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.837][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.838][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:58.838][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:58.839][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.840][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.840][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:58.841][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:58.842][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.842][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.843][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.844][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.845][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.845][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.846][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.847][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.848][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.848][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.849][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.850][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.850][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.851][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.852][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.852][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.853][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.854][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.854][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.855][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.856][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.857][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.857][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:58.858][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:58.859][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.859][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.860][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:58.861][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:58.862][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.862][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.863][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-10-15 08:05:58.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:58.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:58.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:58.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:58.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:58.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:58.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.873][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:58.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:58.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.876][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:58.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:58.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.879][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:58.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:58.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:58.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.891][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:58.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:58.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.894][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:58.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:58.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.896][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:58.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:58.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:58.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:58.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.902][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:58.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:58.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:58.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:58.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.908][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.911][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:58.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.917][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.920][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.923][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:58.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:58.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:58.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.944][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.946][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.949][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:58.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.952][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:58.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:58.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.955][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:58.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:58.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.958][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:58.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:58.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.961][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:58.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:58.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.964][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:58.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:58.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.967][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:58.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:58.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:58.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:58.974][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [3017, 0, 3017, C16H18N4O7S, InChI=1S/C16H18N4O7S/c1-25-12-8-13(26-2)18-15(17-12)19-16(22)20-28(23,24)9-10-6-4-5-7-11(10)14(21)27-3/h4-8H,9H2,1-3H3,(H2,17,18,19,20,22), ...].
biodb.DEBUG[2022-10-15 08:05:58.975][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:05:58.976][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:05:58.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:58.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:58.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:58.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:58.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:58.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:58.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:59.025][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:59.027][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:59.028][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2022-10-15 08:05:59.029][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:59.030][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2022-10-15 08:05:59.031][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:59.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:59.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:59.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:59.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:59.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:59.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:59.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:59.048][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:59.050][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:59.051][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2022-10-15 08:05:59.052][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:59.053][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2022-10-15 08:05:59.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:59.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:59.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:59.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:59.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:59.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:59.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:59.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:59.071][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:59.073][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:59.074][cch$loadFileContent] Trying to load 1 files from cache: [1]: "94c7655c8f372fb2982c15119402bcba".
biodb.TRACE[2022-10-15 08:05:59.075][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:59.076][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content".
biodb.DEBUG[2022-10-15 08:05:59.078][private$bdb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:05:59.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:59.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:59.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:59.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:59.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:59.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:59.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:59.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:59.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:59.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:59.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:59.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.092][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:59.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:59.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.095][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:59.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:59.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.104][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:59.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:59.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.107][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:59.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:59.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:59.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:59.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.113][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:59.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:59.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.116][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.119][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.121][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:59.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:59.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.124][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:59.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:59.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.139][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.142][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.145][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:59.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:59.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.148][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:59.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:59.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.151][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:59.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:59.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.154][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:59.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:59.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.156][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:05:59.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:05:59.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.159][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:05:59.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:05:59.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.162][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:05:59.163][private$selectFields]
biodb.TRACE[2022-10-15 08:05:59.164][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:59.164][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:59.165][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:05:59.166][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:59.167][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:59.167][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.168][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.169][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:59.169][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:59.170][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.171][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.172][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.172][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.173][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.174][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.174][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:59.175][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:59.176][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.177][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.177][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:59.178][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:59.179][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.179][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.180][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.181][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.182][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.182][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.183][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:59.184][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:59.185][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.185][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.186][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.187][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.187][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.188][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.189][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.189][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.190][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.191][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.192][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.192][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.193][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.194][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.195][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:59.195][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:59.196][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.197][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.197][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:59.198][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:59.199][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.200][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.200][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:05:59.201][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:05:59.202][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.202][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.203][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:59.204][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:59.205][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.205][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.206][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:59.207][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:59.208][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.208][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.209][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.210][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.210][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.211][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.212][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:59.213][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:59.213][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.214][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.215][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:59.216][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:59.216][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.217][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.218][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.218][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.224][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.224][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.225][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:59.226][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:59.227][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.228][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.229][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.229][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.230][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.231][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.232][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.232][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.233][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.234][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.234][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.235][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.236][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.237][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.237][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:59.238][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:59.239][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.239][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.240][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:59.241][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:59.242][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.242][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.243][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:05:59.244][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:05:59.244][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.245][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.246][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-10-15 08:05:59.246][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-10-15 08:05:59.247][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:59.248][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:59.249][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.249][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.250][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:59.251][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:59.251][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.252][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.253][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.254][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.254][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.255][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.256][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:59.256][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:59.257][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.258][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.258][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:59.259][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:59.260][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.260][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.261][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.262][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.263][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.264][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.265][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.265][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.266][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.267][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.268][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.268][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.269][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.270][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.270][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.271][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.272][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.273][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:59.273][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:59.274][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.275][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.275][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:59.276][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:59.277][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.277][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.278][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-10-15 08:05:59.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:59.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:59.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:59.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:59.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:59.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:59.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.288][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:59.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:59.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.291][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:59.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:59.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.293][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:59.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:59.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.305][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:59.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:59.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.308][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:59.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:59.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.311][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:59.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:59.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:59.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:59.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:59.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:59.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:59.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:59.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.323][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.350][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.353][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.356][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.359][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:59.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:59.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.362][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:59.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:59.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.365][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:59.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:59.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.368][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:59.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:59.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.371][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:59.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:59.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.374][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:59.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:59.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.380][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2022-10-15 08:05:59.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:59.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:59.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:59.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:59.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:59.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:59.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:59.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:59.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:59.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:59.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:59.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.395][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:59.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:59.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.398][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:59.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:59.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.407][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:59.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:59.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.410][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:59.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:59.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:59.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:59.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.416][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:59.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:59.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.424][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:59.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:59.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.427][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:59.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:59.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.442][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.449][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.453][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:59.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:59.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.456][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:59.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:59.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.459][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:59.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:59.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.462][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:59.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:59.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.465][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:05:59.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:05:59.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.468][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:05:59.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:05:59.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.471][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:05:59.471][private$selectFields]
biodb.TRACE[2022-10-15 08:05:59.472][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:59.473][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:59.473][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:05:59.474][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:59.475][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:59.476][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.476][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.477][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:59.478][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:59.479][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.479][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.480][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.481][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.481][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.482][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.483][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:59.484][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:59.484][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.485][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.486][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:59.486][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:59.487][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.488][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.488][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.489][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.490][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.491][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.491][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:59.492][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:59.493][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.493][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.494][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.495][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.496][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.496][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.497][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.498][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.498][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.499][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.500][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.501][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.501][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.502][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.503][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:59.504][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:59.504][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.505][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.506][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:59.507][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:59.507][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.508][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.509][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:05:59.509][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:05:59.510][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.511][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.511][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:59.512][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:59.513][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.514][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.514][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:59.515][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:59.516][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.516][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.517][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.518][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.519][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.519][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.520][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:59.521][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:59.521][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.522][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.523][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:59.524][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:59.524][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.525][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.526][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.526][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.527][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.528][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.529][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:59.529][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:59.530][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.531][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.531][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.532][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.533][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.534][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.534][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.535][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.536][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.536][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.537][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.538][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.539][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.539][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.540][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:59.541][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:59.541][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.542][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.543][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:59.544][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:59.544][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.545][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.546][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:05:59.547][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:05:59.547][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.548][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.549][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:05:59.549][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:05:59.550][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:59.551][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:59.552][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.552][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.553][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:59.554][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:59.555][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.555][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.556][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.557][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.557][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.558][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.559][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:59.560][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:59.560][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.561][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.562][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:59.563][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:59.563][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.564][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.565][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.565][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.566][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.567][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.568][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:59.568][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:59.569][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.570][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.570][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.571][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.572][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.573][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.573][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.574][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.575][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.575][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.576][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.577][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.578][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.578][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.579][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:59.580][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:59.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.581][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.582][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:59.583][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:59.583][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.584][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.585][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-10-15 08:05:59.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:59.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:59.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:59.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:59.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:59.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:59.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.594][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:59.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:59.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.597][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:59.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:59.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.600][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:59.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:59.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.612][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:59.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:59.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.615][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:59.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:59.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.618][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:59.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:59.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.621][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:59.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:59.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:59.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:59.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:59.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:59.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.639][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:59.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:59.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.642][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:59.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:59.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.645][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:59.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:59.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.666][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.669][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.672][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.680][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:59.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:59.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.683][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:59.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:59.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.686][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:59.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:59.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.689][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:59.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:59.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.692][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:59.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:59.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.695][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:59.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:59.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.702][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2022-10-15 08:05:59.702][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:05:59.703][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:05:59.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:59.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:59.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:59.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:59.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:59.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:59.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:05:59.740][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:59.742][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:59.743][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2022-10-15 08:05:59.744][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:59.745][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2022-10-15 08:05:59.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:59.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:59.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:59.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:59.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:59.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:59.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:59.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:59.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:59.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:59.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:59.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:59.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:59.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:59.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:59.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:59.781][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:05:59.783][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:05:59.784][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2022-10-15 08:05:59.785][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:05:59.786][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2022-10-15 08:05:59.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:59.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:59.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:59.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:59.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:59.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:59.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:59.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:59.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:59.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:59.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:59.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:59.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:59.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:59.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:59.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:59.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:59.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:59.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:59.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:59.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:59.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:59.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:59.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:05:59.837][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:05:59.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:05:59.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:05:59.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:05:59.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:05:59.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:05:59.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:05:59.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:05:59.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:59.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:59.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:59.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:59.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.851][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:59.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:59.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.854][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:59.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:59.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.863][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:59.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:59.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.866][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:59.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:59.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.869][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:59.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:59.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:59.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:59.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.875][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.880][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:59.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:59.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.883][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:59.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:59.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.903][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.906][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.909][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:59.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:59.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.912][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:59.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:59.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.915][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:59.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:59.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.918][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:59.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:59.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.921][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:05:59.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:05:59.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.924][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:05:59.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:05:59.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.927][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:05:59.927][private$selectFields]
biodb.TRACE[2022-10-15 08:05:59.928][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:05:59.929][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:05:59.929][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:05:59.930][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:59.931][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:59.931][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.932][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.933][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:59.934][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:59.934][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.935][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.936][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.936][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.937][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.938][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.938][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:59.939][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:59.940][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.941][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.941][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:59.942][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:59.943][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.943][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.944][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.945][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.945][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.946][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.947][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:59.948][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:59.948][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.949][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.950][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.951][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.952][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.953][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.953][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.954][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.955][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.956][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.956][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.957][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.958][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.958][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:59.959][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:59.960][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.960][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.961][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:59.962][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:05:59.963][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.963][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.964][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:05:59.965][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:05:59.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.966][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.967][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:05:59.968][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:05:59.968][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.969][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.970][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:05:59.970][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:05:59.971][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.972][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.972][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.973][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:05:59.974][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.975][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.975][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:05:59.976][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:05:59.977][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.977][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.978][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:05:59.979][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:05:59.980][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.980][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.981][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.982][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:05:59.983][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.983][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.984][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:59.985][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:05:59.985][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.986][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.987][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.988][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:05:59.988][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.989][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.990][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.991][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:05:59.991][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.992][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.993][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.993][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:05:59.994][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.995][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.996][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:05:59.996][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:05:59.997][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:05:59.998][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:05:59.998][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:05:59.999][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:00.000][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.001][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.001][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:00.002][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:00.003][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.003][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.004][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:00.005][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:00.006][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:00.006][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:00.007][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.008][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.008][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:00.009][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:00.010][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.011][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.011][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.012][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.014][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.014][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:00.015][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:00.016][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.016][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.017][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:00.018][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:00.019][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.019][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.020][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.021][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.021][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.022][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.023][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:00.024][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:00.024][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.025][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.026][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.026][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.027][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.028][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.028][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.029][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.031][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.031][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.032][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.033][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.033][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.034][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:00.035][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:00.036][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.036][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.037][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:00.038][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:00.039][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.039][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.040][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-10-15 08:06:00.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:00.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:00.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:00.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:00.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:00.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:00.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.050][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:00.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:00.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.053][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:00.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:00.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.055][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:00.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:00.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.067][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:00.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:00.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.070][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:00.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:00.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.073][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:00.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:00.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.076][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:00.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:00.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:00.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:00.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.082][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:00.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:00.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.091][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.094][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:00.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:00.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.097][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:00.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:00.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.100][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:00.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:00.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.140][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.143][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.146][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.149][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:00.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:00.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.152][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:00.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:00.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.155][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:00.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:00.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.158][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:00.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:00.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.161][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:00.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:00.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.164][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:00.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:00.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.171][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2022-10-15 08:06:00.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:00.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:00.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:00.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:00.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:00.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:00.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:00.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:00.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:00.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:00.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:00.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.186][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:00.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:00.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.189][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:00.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:00.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.198][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:00.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:00.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.201][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:00.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:00.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.203][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:00.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:00.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:00.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:00.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.212][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.215][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:00.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:00.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.218][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:00.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:00.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.233][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.236][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.239][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:00.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:00.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.242][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:00.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:00.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.245][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:00.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:00.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.248][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:00.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:00.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.251][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:00.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:00.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.254][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:00.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:00.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.257][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:00.258][private$selectFields]
biodb.TRACE[2022-10-15 08:06:00.259][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:06:00.260][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:06:00.260][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:00.261][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:00.262][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:00.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.263][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.264][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:00.265][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:00.266][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.266][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.267][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.268][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.269][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.269][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.270][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:00.271][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:00.272][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.272][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.273][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:00.274][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:00.275][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.275][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.276][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.277][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.278][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.278][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.279][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:00.280][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:00.281][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.281][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.282][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.283][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.283][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.284][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.285][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.286][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.286][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.287][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.288][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.289][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.289][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.290][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.291][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:00.292][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:00.292][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.293][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.294][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:00.295][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:00.295][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.296][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.297][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:00.298][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:00.298][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.299][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.300][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:00.301][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:00.301][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.302][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.303][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:00.304][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:00.304][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.305][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.306][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.307][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.307][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.308][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.309][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:00.310][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:00.310][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.311][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.312][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:00.313][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:00.313][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.314][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.315][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.315][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.317][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.318][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:00.318][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:00.319][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.320][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.321][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.321][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.322][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.323][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.324][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.324][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.325][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.326][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.326][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.327][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.328][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.329][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.329][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:00.330][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:00.331][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.332][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.332][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:00.333][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:00.334][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.335][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.335][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:00.336][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:00.337][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.337][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.338][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:00.339][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:00.340][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:00.341][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:00.341][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.342][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.343][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:00.344][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:00.344][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.345][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.346][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.346][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.347][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.348][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.349][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:00.349][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:00.350][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.351][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.352][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:00.352][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:00.353][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.354][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.355][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.355][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.356][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.357][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.357][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:00.358][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:00.359][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.360][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.360][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.361][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.362][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.363][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.363][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.364][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.365][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.370][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.371][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.372][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.373][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.373][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.374][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:00.375][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:00.376][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.376][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.377][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:00.378][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:00.378][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.379][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.380][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-10-15 08:06:00.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:00.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:00.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:00.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:00.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:00.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:00.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.390][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:00.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:00.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.392][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:00.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:00.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.395][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:00.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:00.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.407][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:00.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:00.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.410][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:00.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:00.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.413][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:00.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:00.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.416][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:00.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:00.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:00.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:00.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:00.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:00.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.433][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:00.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:00.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.436][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:00.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:00.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.439][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:00.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:00.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.460][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.463][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.466][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.469][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:00.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:00.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.472][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:00.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:00.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.475][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:00.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:00.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.478][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:00.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:00.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.481][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:00.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:00.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.484][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:00.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:00.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.491][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2022-10-15 08:06:00.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:00.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:00.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:00.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:00.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:00.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:00.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:00.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:00.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:00.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:00.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:00.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.506][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:00.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:00.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.509][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:00.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:00.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.517][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:00.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:00.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.520][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:00.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:00.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.523][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:00.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:00.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.526][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:00.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:00.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.529][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.532][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.535][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:00.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:00.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.538][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:00.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:00.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.552][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.555][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.558][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:00.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:00.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.561][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:00.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:00.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.564][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:00.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:00.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.567][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:00.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:00.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.570][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:00.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:00.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.573][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:00.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:00.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.576][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:00.576][private$selectFields]
biodb.TRACE[2022-10-15 08:06:00.577][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:06:00.578][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:06:00.579][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:00.579][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:00.580][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:00.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.581][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.582][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:00.583][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:00.584][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.584][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.585][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.586][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.587][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.587][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.588][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:00.589][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:00.589][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.590][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.591][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:00.592][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:00.592][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.597][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.598][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.599][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.600][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.601][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.601][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:00.602][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:00.603][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.604][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.604][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.605][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.606][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.607][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.608][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.608][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.609][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.610][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.610][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.611][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.612][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.613][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.613][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:00.614][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:00.615][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.616][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.616][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:00.617][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:00.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.618][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.619][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:00.620][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:00.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.621][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.622][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:00.623][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:00.623][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.624][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.625][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:00.626][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:00.626][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.627][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.628][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.628][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.629][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.630][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.631][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:00.631][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:00.632][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.633][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.634][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:00.634][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:00.635][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.636][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.636][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.637][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.639][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.639][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:00.640][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:00.641][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.642][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.642][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.643][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.644][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.644][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.645][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.646][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.647][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.647][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.648][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.649][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.650][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.650][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.651][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:00.652][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:00.652][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.653][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.654][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:00.655][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:00.655][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.656][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.657][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:00.658][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:00.658][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.659][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.660][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-10-15 08:06:00.660][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-10-15 08:06:00.661][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:00.662][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:00.663][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.663][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.664][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:00.665][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:00.665][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.666][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.667][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.668][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.668][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.669][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.670][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:00.671][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:00.671][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.672][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.673][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:00.674][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:00.674][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.675][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.676][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.676][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.677][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.678][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.679][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.679][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.680][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.681][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.681][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.682][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.683][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.684][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.684][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.685][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.686][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.687][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.687][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:00.688][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:00.689][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.689][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.690][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:00.691][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:00.692][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.692][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.693][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-10-15 08:06:00.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:00.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:00.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:00.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:00.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:00.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:00.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.703][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:00.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:00.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.706][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:00.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:00.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.709][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:00.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:00.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:00.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.721][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:00.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:00.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.724][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:00.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:00.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.727][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:00.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:00.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:00.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:00.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.732][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:00.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:00.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.735][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:00.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:00.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.741][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:00.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:00.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.765][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.768][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.771][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:00.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.774][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:00.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:00.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.776][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:00.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:00.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.779][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:00.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:00.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.782][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:00.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:00.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.787][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:00.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:00.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.792][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:00.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:00.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.806][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2022-10-15 08:06:00.808][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:06:00.809][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:06:00.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:00.814][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:00.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:00.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:00.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:00.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:00.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:00.865][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:06:00.868][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:06:00.869][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2022-10-15 08:06:00.870][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:06:00.871][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2022-10-15 08:06:00.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:00.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:00.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:00.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:00.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:00.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:00.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:00.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:00.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:00.896][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:00.897][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:00.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:00.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:00.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:00.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:00.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:00.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:00.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:00.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:00.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:00.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:00.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:00.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:00.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:00.937][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:00.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:00.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:00.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:00.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:00.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:00.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:00.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:00.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:00.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:00.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:00.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:00.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:00.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:00.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:00.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:00.978][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:00.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:00.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:00.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:00.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:00.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:00.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:00.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:00.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:00.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:00.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:01.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:01.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:01.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:01.005][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:01.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:01.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:01.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:01.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:01.020][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:06:01.023][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:06:01.024][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2022-10-15 08:06:01.025][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:06:01.026][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2022-10-15 08:06:01.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:01.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:01.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:01.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:01.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:01.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:01.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:01.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:01.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:01.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:01.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:01.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:01.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:01.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:01.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:01.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:01.069][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:06:01.071][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:06:01.072][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dd9d19fb78fcc7453eff2e9dd7ba5702".
biodb.TRACE[2022-10-15 08:06:01.073][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:06:01.074][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.content".
biodb.DEBUG[2022-10-15 08:06:01.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:01.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:01.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:01.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:01.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:01.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:01.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:01.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.095][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:01.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:01.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:01.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:01.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:01.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:01.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:01.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:01.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:01.126][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:06:01.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:01.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:01.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:01.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:01.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:01.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:01.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:01.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:01.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:01.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:01.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:01.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.146][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:01.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:01.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.149][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:01.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:01.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.159][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:01.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:01.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.162][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:01.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:01.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.166][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:01.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:01.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.169][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:01.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:01.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.179][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:01.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:01.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.182][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:01.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:01.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.197][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.201][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.204][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:01.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:01.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.207][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:01.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:01.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.210][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:01.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:01.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.213][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:01.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:01.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.216][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:01.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:01.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.219][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:01.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:01.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.222][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:01.223][private$selectFields]
biodb.TRACE[2022-10-15 08:06:01.224][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:06:01.225][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:06:01.225][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:01.226][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:01.227][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:01.228][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.229][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.229][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:01.230][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:01.231][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.232][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.233][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.233][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.234][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.235][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.236][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:01.237][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:01.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.238][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.239][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:01.240][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:01.240][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.241][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.242][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.243][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.244][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.244][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.245][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:01.246][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:01.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.248][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.248][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.249][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.250][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.251][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.251][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.252][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.253][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.254][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.254][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.255][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.256][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.257][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.258][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:01.258][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:01.259][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.260][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.261][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:01.261][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:01.262][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.263][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.264][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:01.265][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:01.265][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.266][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.267][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:01.268][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:01.269][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.269][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.270][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:01.271][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:01.272][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.273][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.273][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.274][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.275][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.276][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.277][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:01.277][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:01.278][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.279][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.280][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:01.281][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:01.281][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.282][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.283][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.284][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.284][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.285][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.286][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:01.287][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:01.288][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.288][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.289][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.290][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.291][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.292][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.292][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.293][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.294][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.295][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.295][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.296][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.297][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.298][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.299][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:01.299][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:01.300][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.301][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.302][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:01.303][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:01.303][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.304][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.305][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:01.306][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:01.306][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.307][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.308][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:01.309][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:01.309][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:01.310][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:01.311][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.312][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.313][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:01.313][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:01.314][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.315][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.316][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.317][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.317][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.318][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.319][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:01.320][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:01.320][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.321][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.322][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:01.323][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:01.324][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.324][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.325][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.326][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.327][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.327][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.328][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:01.329][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:01.330][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.330][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.331][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.332][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.333][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.333][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.334][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.335][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.336][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.336][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.337][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.338][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.339][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.339][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.340][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:01.341][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:01.342][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.342][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.343][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:01.344][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:01.344][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.345][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.346][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-10-15 08:06:01.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:01.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:01.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:01.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:01.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:01.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:01.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.356][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:01.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:01.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.359][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:01.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:01.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.362][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:01.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:01.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.378][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:01.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:01.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.381][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:01.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:01.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.384][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:01.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:01.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.387][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:01.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:01.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:01.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:01.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:01.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:01.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.405][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:01.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:01.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.407][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:01.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:01.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.410][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:01.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:01.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.431][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.434][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.436][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.439][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:01.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:01.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.442][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:01.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:01.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.445][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:01.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:01.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.448][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:01.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:01.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:01.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:01.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.454][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:01.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:01.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.461][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2022-10-15 08:06:01.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:01.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:01.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:01.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:01.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:01.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:01.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:01.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:01.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:01.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:01.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:01.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.476][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:01.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:01.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.479][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:01.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:01.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.488][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:01.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:01.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.491][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:01.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:01.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:01.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:01.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.496][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:01.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:01.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.499][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.502][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.505][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:01.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:01.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.508][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:01.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:01.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.522][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.525][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.528][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:01.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:01.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.531][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:01.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:01.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.534][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:01.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:01.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.537][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:01.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:01.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.540][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:01.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:01.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.543][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:01.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:01.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.546][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:01.546][private$selectFields]
biodb.TRACE[2022-10-15 08:06:01.547][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:06:01.548][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:06:01.548][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:01.549][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:01.550][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:01.551][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.551][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.552][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:01.553][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:01.554][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.554][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.555][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.556][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.556][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.557][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.558][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:01.559][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:01.559][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.560][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.561][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:01.562][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:01.562][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.563][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.564][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.564][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.566][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.567][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:01.567][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:01.568][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.569][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.569][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.570][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.571][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.572][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.572][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.573][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.574][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.574][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.575][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.576][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.577][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.577][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.578][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:01.579][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:01.580][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.580][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.581][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:01.582][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:01.583][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.583][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.584][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:01.585][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:01.585][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.586][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.587][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:01.588][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:01.588][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.589][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.590][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:01.591][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:01.592][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.592][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.597][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.598][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.599][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.600][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.601][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:01.601][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:01.602][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.603][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.604][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:01.604][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:01.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.606][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.607][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.607][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.608][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.609][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.609][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:01.610][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:01.611][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.612][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.612][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.613][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.614][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.614][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.615][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.616][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.617][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.617][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.618][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.619][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.619][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.620][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.621][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:01.621][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:01.622][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.623][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.624][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:01.624][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:01.625][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.626][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.626][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:01.627][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:01.628][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.628][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.629][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-10-15 08:06:01.630][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-10-15 08:06:01.631][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:01.631][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:01.632][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.633][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.633][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:01.634][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:01.635][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.636][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.636][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.637][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.638][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.639][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:01.640][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:01.641][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.641][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.642][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:01.643][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:01.643][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.644][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.645][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.645][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.646][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.647][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.648][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.648][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.649][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.650][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.651][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.651][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.652][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.653][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.653][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.654][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.655][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.656][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.656][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:01.657][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:01.658][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.659][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.659][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:01.660][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:01.661][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.661][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.662][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-10-15 08:06:01.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:01.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:01.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:01.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:01.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:01.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:01.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.672][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:01.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:01.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.675][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:01.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:01.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.678][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:01.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:01.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.690][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:01.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:01.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.693][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:01.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:01.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.696][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:01.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:01.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:01.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:01.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:01.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:01.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.704][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:01.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:01.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.710][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.734][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.737][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.740][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.743][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:01.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:01.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.746][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:01.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:01.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.748][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:01.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:01.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.752][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:01.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:01.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.754][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:01.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:01.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.757][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:01.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:01.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.764][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2022-10-15 08:06:01.765][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:01.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:01.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:01.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:01.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:01.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:01.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:01.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:01.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:01.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:01.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:01.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.779][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:01.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:01.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.781][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:01.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:01.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.790][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:01.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:01.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.793][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:01.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:01.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:01.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:01.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.799][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:01.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:01.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.808][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:01.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:01.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.811][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:01.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:01.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.831][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.834][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.837][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:01.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:01.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.840][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:01.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:01.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.843][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:01.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:01.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.846][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:01.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:01.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.848][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:01.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:01.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.851][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:01.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:01.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.854][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:01.855][private$selectFields]
biodb.TRACE[2022-10-15 08:06:01.856][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:06:01.856][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:06:01.857][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:01.858][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:01.859][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:01.859][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.860][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.861][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:01.862][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:01.862][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.863][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.864][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.864][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.865][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.866][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.867][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:01.867][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:01.868][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.869][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.870][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:01.870][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:01.871][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.872][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.872][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.873][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.874][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.875][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.875][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:01.876][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:01.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.878][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.878][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.879][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.880][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.881][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.881][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.882][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.883][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.883][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.884][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.885][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.886][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.886][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.887][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:01.888][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:01.889][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.889][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.890][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:01.891][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:01.891][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.892][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.893][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:01.894][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:01.894][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.895][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.896][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:01.897][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:01.897][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.898][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.899][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:01.900][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:01.900][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.901][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.902][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.903][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.903][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.904][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.905][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:01.906][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:01.906][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.907][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.908][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:01.908][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:01.909][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.910][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.911][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.911][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.912][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.913][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.914][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:01.914][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:01.915][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.916][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.917][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.917][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.918][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.919][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.920][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.920][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.921][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.922][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.923][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.923][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.924][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.925][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.926][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:01.926][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:01.927][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.928][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.929][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:01.929][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:01.930][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.931][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.932][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:01.932][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:01.933][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.934][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.935][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:01.936][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:01.936][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:01.937][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:01.938][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.938][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.939][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:01.940][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:01.941][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.941][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.942][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.943][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.944][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.944][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.945][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:01.946][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:01.947][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.947][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.948][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:01.949][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:01.950][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.950][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.951][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.952][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:01.953][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.953][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.954][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:01.955][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:01.955][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.956][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.957][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.958][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:01.958][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.959][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.960][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.961][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:01.961][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.962][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.963][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.964][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:01.964][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.965][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.966][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:01.967][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:01.967][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.968][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.969][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:01.970][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:01.970][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.971][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.972][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-10-15 08:06:01.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:01.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:01.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:01.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:01.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:01.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:01.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.982][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:01.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:01.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.985][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:01.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:01.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.988][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:01.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:01.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:01.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:01.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:01.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.000][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:02.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:02.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.003][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:02.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:02.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.006][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:02.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:02.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.009][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:02.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:02.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:02.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:02.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:02.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:02.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.024][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.027][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.030][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.033][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.059][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.062][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.065][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.068][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:02.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:02.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.071][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:02.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:02.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.074][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:02.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:02.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.077][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:02.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:02.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.080][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:02.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:02.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.083][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:02.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:02.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.090][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [3017, 0, 3017, C16H18N4O7S, InChI=1S/C16H18N4O7S/c1-25-12-8-13(26-2)18-15(17-12)19-16(22)20-28(23,24)9-10-6-4-5-7-11(10)14(21)27-3/h4-8H,9H2,1-3H3,(H2,17,18,19,20,22), ...].
biodb.DEBUG[2022-10-15 08:06:02.090][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:06:02.091][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-10-15 08:06:02.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:02.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:02.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:02.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:02.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:02.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:02.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:02.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:02.170][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:06:02.172][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:06:02.173][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2022-10-15 08:06:02.174][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:06:02.175][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2022-10-15 08:06:02.177][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:06:02.179][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:06:02.180][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2022-10-15 08:06:02.181][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:06:02.182][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2022-10-15 08:06:02.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:02.184][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:02.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:02.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:02.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:02.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:02.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:02.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:02.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:02.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:02.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:02.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:02.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:02.206][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:02.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:02.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:02.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:02.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:02.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:02.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:02.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:02.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:02.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:02.224][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:02.233][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:06:02.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:02.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:02.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:02.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:02.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:02.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:02.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:02.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:02.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:02.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:02.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:02.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.247][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:02.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:02.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.250][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:02.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:02.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.259][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:02.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:02.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.262][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:02.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:02.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:02.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:02.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:02.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:02.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.271][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.282][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.285][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.299][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.302][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.305][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:02.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:02.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.308][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:02.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:02.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.310][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:02.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:02.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.313][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:02.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:02.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.316][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:02.317][private$selectFields]
biodb.TRACE[2022-10-15 08:06:02.317][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:06:02.318][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:06:02.319][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:02.320][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:02.320][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:02.321][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.322][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.322][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:02.323][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:02.324][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.325][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.325][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.326][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.327][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.327][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.328][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:02.329][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:02.330][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.330][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.331][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:02.332][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:02.332][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.333][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.334][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.335][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.335][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.336][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.337][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.337][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.338][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.339][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.339][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.340][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.341][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.342][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.342][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.343][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.344][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.344][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.345][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.346][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.347][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.347][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.348][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:02.349][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:02.349][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.350][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.351][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:02.352][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:02.352][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.353][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.354][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:02.354][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:02.355][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.356][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.356][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:02.357][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:02.358][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.359][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.359][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.360][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.361][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.361][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.362][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:02.363][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:02.364][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.364][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.365][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:02.366][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:02.367][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.367][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.368][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.369][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.369][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.370][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.371][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.372][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.372][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.373][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.374][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.375][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.376][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.376][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.377][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.378][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.378][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.379][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.380][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.381][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.381][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.382][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.383][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:02.384][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:02.384][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.385][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.386][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:02.386][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:02.387][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.388][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.389][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:02.389][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:02.390][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:02.391][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:02.392][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.392][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.393][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:02.394][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:02.394][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.395][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.396][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.397][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.397][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.398][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.399][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:02.400][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:02.400][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.401][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.402][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:02.402][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:02.403][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.404][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.405][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.405][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.406][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.407][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.407][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.408][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.409][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.410][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.410][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.411][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.412][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.412][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.413][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.414][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.415][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.415][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.416][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.417][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.417][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.418][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.419][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:02.420][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:02.420][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.421][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.422][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:02.423][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:02.423][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.424][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.425][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-10-15 08:06:02.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:02.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:02.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:02.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:02.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:02.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:02.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.434][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:02.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:02.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.437][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:02.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:02.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.440][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:02.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:02.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.452][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:02.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:02.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.455][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:02.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:02.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.458][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:02.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:02.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:02.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:02.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.464][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:02.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:02.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:02.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:02.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.470][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.473][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.476][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.479][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.481][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.484][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.510][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.513][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.516][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.519][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:02.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:02.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.522][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:02.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:02.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.525][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:02.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:02.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.528][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:02.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:02.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.531][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:02.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:02.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.534][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:02.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:02.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.541][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2022-10-15 08:06:02.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:02.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:02.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:02.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:02.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:02.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:02.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:02.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:02.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:02.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:02.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:02.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.555][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:02.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:02.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.558][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:02.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:02.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.567][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:02.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:02.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.570][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:02.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:02.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:02.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:02.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:02.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:02.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.584][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.587][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.602][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.605][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.608][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:02.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:02.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.611][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:02.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:02.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.613][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:02.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:02.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.616][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:02.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:02.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.619][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:02.620][private$selectFields]
biodb.TRACE[2022-10-15 08:06:02.621][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:06:02.621][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:06:02.622][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:02.623][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:02.624][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:02.624][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.625][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.626][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:02.627][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:02.627][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.628][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.629][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.629][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.630][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.631][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.632][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:02.632][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:02.633][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.634][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.634][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:02.635][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:02.636][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.637][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.637][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.638][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.639][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.640][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.640][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.641][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.642][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.642][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.643][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.644][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.645][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.645][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.646][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.647][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.647][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.648][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.649][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.650][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.650][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.651][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.652][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:02.653][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:02.653][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.654][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.655][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:02.655][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:02.656][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.657][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.658][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:02.658][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:02.659][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.660][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.660][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:02.661][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:02.662][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.663][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.663][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.664][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.665][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.665][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.666][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:02.667][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:02.668][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.668][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.669][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:02.670][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:02.671][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.671][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.672][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.673][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.674][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.674][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.675][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.676][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.677][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.677][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.678][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.679][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.680][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.680][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.681][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.682][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.683][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.683][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.684][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.685][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.686][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.686][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.687][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:02.688][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:02.688][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.689][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.690][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:02.691][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:02.691][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.692][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.693][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:02.694][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:02.694][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:02.695][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:02.696][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.697][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.697][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:02.698][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:02.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.700][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.700][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.701][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.702][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.703][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.703][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:02.704][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:02.705][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.705][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.706][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:02.707][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:02.708][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.708][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.709][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.710][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.711][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.711][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.712][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.713][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.713][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.714][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.715][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.716][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.716][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.717][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.718][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.719][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.719][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.720][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.721][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.721][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.722][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.723][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.724][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:02.724][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:02.725][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.730][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.731][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:02.732][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:02.733][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.734][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.734][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-10-15 08:06:02.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:02.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:02.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:02.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:02.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:02.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:02.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.744][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:02.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:02.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.747][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:02.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:02.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.750][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:02.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:02.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.762][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:02.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:02.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.765][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:02.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:02.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.768][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:02.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:02.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.771][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:02.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:02.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.774][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:02.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:02.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.777][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:02.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:02.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.789][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.792][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.795][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.816][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.819][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.822][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.825][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:02.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:02.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.828][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:02.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:02.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.831][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:02.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:02.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.834][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:02.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:02.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.837][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:02.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:02.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.840][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:02.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:02.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.847][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2022-10-15 08:06:02.847][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:02.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:02.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:02.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:02.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:02.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:02.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:02.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:02.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:02.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:02.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:02.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.861][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:02.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:02.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.864][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:02.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:02.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.873][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:02.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:02.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.876][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:02.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:02.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:02.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:02.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:02.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:02.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.885][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.890][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.893][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.908][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.911][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.914][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:02.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:02.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.917][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:02.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:02.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.919][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:02.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:02.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.922][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:02.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:02.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.925][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:02.926][private$selectFields]
biodb.TRACE[2022-10-15 08:06:02.927][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:06:02.927][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:06:02.928][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:02.929][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:02.930][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:02.930][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.931][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.932][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:02.932][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:02.933][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.934][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.935][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.935][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.936][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.937][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.937][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:02.938][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:02.939][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.940][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.940][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:02.941][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:02.942][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.943][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.943][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.944][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.945][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.945][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.946][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.947][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.948][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.948][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.949][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.950][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.950][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.951][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.952][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.957][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.958][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.959][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.960][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.960][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.961][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.962][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.963][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:02.963][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:02.964][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.965][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.966][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:02.966][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:02.967][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.968][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.968][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:02.969][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:02.970][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.971][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.971][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:02.972][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:02.973][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.973][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.974][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.975][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:02.976][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.976][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.977][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:02.978][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:02.978][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.979][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.980][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:02.981][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:02.981][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.982][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.983][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.983][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:02.984][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.985][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.986][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.986][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:02.987][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.988][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.988][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.989][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:02.990][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.990][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.991][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.992][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:02.993][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.993][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.994][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.995][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:02.995][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.996][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:02.997][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:02.998][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:02.998][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:02.999][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.000][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:03.000][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:03.001][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.002][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.002][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-10-15 08:06:03.003][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-10-15 08:06:03.004][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:03.005][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:03.005][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.006][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.007][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:03.008][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:03.008][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.009][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.010][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.011][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.011][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.012][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.013][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:03.013][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:03.014][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.015][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.015][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:03.016][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:03.017][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.018][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.018][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.019][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.020][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.020][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.021][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.022][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.023][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.023][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.024][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.025][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.025][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.026][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.027][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.028][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.028][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.029][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.030][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:03.030][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:03.031][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.032][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.032][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:03.033][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:03.034][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.035][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.035][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-10-15 08:06:03.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:03.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:03.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:03.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:03.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:03.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:03.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.045][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:03.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:03.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.048][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:03.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:03.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.051][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:03.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:03.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.063][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:03.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:03.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.066][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:03.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:03.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.069][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:03.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:03.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.072][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:03.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:03.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:03.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:03.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.077][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:03.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:03.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.095][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.107][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.110][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.113][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.116][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:03.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:03.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.118][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:03.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:03.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.121][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:03.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:03.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.124][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:03.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:03.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.127][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:03.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:03.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.130][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:03.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:03.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.137][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2022-10-15 08:06:03.138][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:06:03.138][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:06:03.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:03.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:03.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:03.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:03.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:03.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:03.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:03.181][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:06:03.184][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:06:03.185][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2022-10-15 08:06:03.186][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:06:03.187][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2022-10-15 08:06:03.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:03.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:03.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:03.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:03.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:03.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:03.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:03.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:03.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:03.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:03.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:03.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:03.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:03.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:03.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:03.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:03.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:03.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:03.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:03.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:03.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:03.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:03.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:03.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:03.237][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:06:03.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:03.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:03.240][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:03.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:03.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:03.245][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:03.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:03.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:03.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:03.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:03.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:03.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.252][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:03.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:03.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.255][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:03.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:03.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.264][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:03.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:03.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.267][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:03.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:03.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.270][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:03.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:03.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.273][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:03.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:03.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.276][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.282][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:03.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:03.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.285][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:03.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:03.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.300][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.303][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:03.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:03.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.309][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:03.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:03.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.312][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:03.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:03.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.315][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:03.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:03.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.318][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:03.318][private$selectFields]
biodb.TRACE[2022-10-15 08:06:03.319][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:06:03.320][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:06:03.320][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:03.321][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:03.322][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:03.323][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.323][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.324][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:03.325][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:03.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.326][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.327][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.328][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.328][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.329][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.330][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:03.331][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:03.331][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.332][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.333][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:03.334][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:03.334][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.335][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.336][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.336][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.337][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.338][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.339][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:03.339][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:03.340][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.341][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.341][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.342][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.343][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.344][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.344][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.345][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.346][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.347][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.347][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.348][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.349][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.349][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.350][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:03.351][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:03.352][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.352][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.353][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:03.354][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:03.355][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.355][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.356][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:03.357][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:03.358][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.358][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.359][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:03.360][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:03.361][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.361][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.362][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.363][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.363][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.364][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.365][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:03.366][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:03.366][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.367][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.368][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:03.369][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:03.369][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.370][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.371][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.371][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.372][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.373][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.373][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:03.374][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:03.375][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.376][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.376][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.377][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.378][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.379][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.379][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.380][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.381][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.381][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.382][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.383][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.384][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.384][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.385][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:03.386][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:03.386][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.387][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.388][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:03.389][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:03.389][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.390][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.391][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:03.392][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:03.392][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:03.393][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:03.394][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.394][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.395][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:03.396][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:03.397][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.397][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.398][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.399][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.400][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.400][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.401][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:03.407][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:03.408][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.408][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.409][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:03.410][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:03.411][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.411][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.412][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.413][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.414][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.414][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.415][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:03.416][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:03.416][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.417][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.418][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.419][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.419][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.420][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.421][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.422][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.422][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.423][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.424][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.424][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.425][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.426][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.426][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:03.427][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:03.428][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.428][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.429][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:03.430][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:03.431][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.431][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.432][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-10-15 08:06:03.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:03.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:03.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:03.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:03.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:03.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:03.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.442][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:03.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:03.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.444][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:03.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:03.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.447][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:03.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:03.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.459][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:03.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:03.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.462][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:03.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:03.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.465][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:03.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:03.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.468][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:03.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:03.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.470][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:03.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:03.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.473][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:03.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:03.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.476][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.479][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.485][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:03.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:03.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.488][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:03.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:03.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.491][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:03.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:03.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.512][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.515][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.518][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.526][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:03.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:03.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.529][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:03.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:03.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:03.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:03.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.536][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:03.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:03.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.540][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:03.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:03.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.543][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:03.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:03.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.551][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2022-10-15 08:06:03.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:03.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:03.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:03.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:03.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:03.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:03.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:03.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:03.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:03.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:03.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:03.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.569][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:03.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:03.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.573][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:03.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:03.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.583][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:03.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:03.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.586][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:03.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:03.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:03.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:03.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:03.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:03.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.603][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:03.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:03.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.606][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:03.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:03.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.623][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.626][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.629][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:03.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:03.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.633][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:03.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:03.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.636][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:03.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:03.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.639][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:03.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:03.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.643][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:03.643][private$selectFields]
biodb.TRACE[2022-10-15 08:06:03.644][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:06:03.645][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:06:03.646][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:03.647][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:03.648][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:03.660][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.662][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.663][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:03.664][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:03.665][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.666][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.667][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.668][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.668][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.669][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.670][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:03.671][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:03.672][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.672][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.673][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:03.674][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:03.675][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.676][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.676][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.677][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.678][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.679][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.679][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:03.680][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:03.681][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.682][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.683][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.683][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.684][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.685][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.686][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.686][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.687][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.688][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.689][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.690][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.690][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.691][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.692][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:03.693][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:03.693][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.694][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.695][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:03.696][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:03.696][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.697][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.698][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:03.699][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:03.700][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.700][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.701][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:03.702][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:03.703][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.703][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.704][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.705][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.706][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.707][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.707][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:03.708][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:03.709][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.710][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.711][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:03.711][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:03.712][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.713][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.714][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.714][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.715][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.716][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.717][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:03.718][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:03.718][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.719][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.720][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.721][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.722][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.722][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.723][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.724][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.725][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.725][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.726][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.727][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.728][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.728][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.729][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:03.730][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:03.731][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.731][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.732][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:03.733][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:03.734][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.734][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.735][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-10-15 08:06:03.736][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-10-15 08:06:03.737][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:03.738][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:03.738][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.739][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.740][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:03.741][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:03.741][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.742][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.743][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.744][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.744][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.745][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.746][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:03.747][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:03.747][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.748][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.749][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:03.750][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:03.751][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.751][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.752][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.753][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.754][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.754][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.755][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.756][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.757][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.758][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.758][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.759][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.760][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.761][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.762][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.763][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.763][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.764][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.765][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:03.766][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:03.766][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.767][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.768][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:03.769][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:03.769][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.770][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.771][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-10-15 08:06:03.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:03.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:03.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:03.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:03.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:03.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:03.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.781][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:03.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:03.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.784][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:03.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:03.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.787][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:03.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:03.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.799][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:03.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:03.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.802][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:03.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:03.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.805][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:03.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:03.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.808][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:03.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:03.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.811][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:03.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:03.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:03.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:03.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.840][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.843][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.846][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.849][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.852][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:03.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:03.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.855][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:03.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:03.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.858][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:03.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:03.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.861][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:03.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:03.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.864][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:03.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:03.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.867][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:03.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:03.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.874][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2022-10-15 08:06:03.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:03.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:03.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:03.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:03.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:03.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:03.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:03.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:03.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:03.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:03.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:03.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.888][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:03.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:03.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.896][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:03.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:03.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.905][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:03.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:03.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.908][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:03.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:03.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.911][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:03.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:03.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:03.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:03.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.923][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:03.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:03.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.925][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:03.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:03.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.940][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.943][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.946][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:03.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:03.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.948][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:03.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:03.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.951][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:03.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:03.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.954][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:03.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:03.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.957][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:03.958][private$selectFields]
biodb.TRACE[2022-10-15 08:06:03.959][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:06:03.959][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:06:03.960][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:03.961][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:03.961][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:03.962][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.963][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.963][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:03.964][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:03.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.966][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.966][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.967][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:03.968][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.968][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.969][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:03.970][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:03.971][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.971][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.972][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:03.973][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:03.973][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.974][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.975][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.976][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:03.976][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.977][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.978][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:03.978][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:03.979][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.980][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.981][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.981][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:03.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.983][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.983][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.984][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:03.985][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.986][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.986][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.987][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:03.988][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.989][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.989][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:03.990][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:03.991][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.991][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.992][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:03.993][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:03.994][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.994][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.995][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:03.996][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:03.997][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:03.997][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:03.998][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:03.999][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:03.999][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.000][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.001][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.002][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.002][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.003][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.004][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:04.004][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:04.005][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.006][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.007][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:04.007][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:04.008][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.009][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.009][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.010][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.011][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.012][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.012][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:04.013][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:04.014][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.014][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.015][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.016][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.017][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.017][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.018][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.019][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.020][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.020][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.021][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.022][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.022][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.023][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.024][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:04.025][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:04.025][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.026][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.027][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:04.027][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:04.028][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.029][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.030][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-10-15 08:06:04.030][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-10-15 08:06:04.031][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:04.032][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:04.033][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.033][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.034][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:04.035][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:04.036][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.036][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.037][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.038][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.038][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.039][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.040][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:04.041][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:04.041][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.042][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.043][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:04.044][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:04.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.045][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.046][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.046][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.047][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.048][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.049][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.049][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.050][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.051][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.051][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.052][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.053][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.054][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.054][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.055][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.056][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.056][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.057][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:04.058][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:04.059][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.059][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.060][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:04.061][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:04.062][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.062][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.063][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-10-15 08:06:04.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:04.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:04.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:04.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:04.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:04.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:04.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.073][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:04.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:04.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.076][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:04.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:04.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.079][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:04.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:04.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.091][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:04.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:04.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.093][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:04.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:04.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.096][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:04.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:04.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.099][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:04.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:04.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.102][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:04.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:04.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:04.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:04.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.108][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.111][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.114][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.140][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.143][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.146][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.149][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:04.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:04.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.152][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:04.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:04.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.154][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:04.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:04.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.157][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:04.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:04.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.160][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:04.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:04.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.163][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:04.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:04.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.170][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2022-10-15 08:06:04.170][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:06:04.171][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:06:04.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:04.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:04.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:04.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:04.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:04.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:04.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:04.209][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:06:04.211][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:06:04.212][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2022-10-15 08:06:04.213][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:06:04.214][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2022-10-15 08:06:04.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:04.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:04.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:04.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:04.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:04.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:04.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:04.224][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:04.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:04.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:04.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:04.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:04.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:04.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:04.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:04.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:04.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:04.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:04.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:04.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:04.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:04.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:04.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:04.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:04.266][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:06:04.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:04.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:04.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:04.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:04.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:04.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:04.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:04.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:04.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:04.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:04.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:04.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.281][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:04.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:04.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.284][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:04.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:04.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.292][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:04.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:04.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.295][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:04.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:04.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.298][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:04.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:04.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:04.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:04.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.304][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.310][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:04.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:04.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.313][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:04.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:04.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.322][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.328][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.331][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.334][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:04.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:04.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.337][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:04.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:04.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.345][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:04.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:04.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.348][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:04.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:04.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.351][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:04.352][private$selectFields]
biodb.TRACE[2022-10-15 08:06:04.352][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:06:04.353][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:06:04.354][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:04.355][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:04.355][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:04.356][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.357][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.357][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:04.358][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:04.359][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.360][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.360][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.361][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.362][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.363][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.363][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:04.364][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:04.365][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.365][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.366][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:04.367][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:04.368][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.368][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.369][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.370][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.370][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.371][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.372][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:04.373][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:04.373][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.374][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.375][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.376][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.376][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.377][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.378][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.378][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.379][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.380][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.380][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.381][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.382][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.383][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.383][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:04.384][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:04.385][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.385][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.386][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:04.387][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:04.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.388][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.389][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:04.390][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:04.391][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.391][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.392][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:04.393][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:04.393][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.394][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.395][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.396][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.396][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.397][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.398][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:04.399][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:04.399][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.400][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.401][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:04.401][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:04.402][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.403][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.404][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.404][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.405][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.406][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.406][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:04.407][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:04.408][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.409][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.409][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.410][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.411][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.411][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.412][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.413][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.414][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.414][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.415][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.416][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.416][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.417][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.418][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:04.419][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:04.419][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.420][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.421][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:04.421][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:04.422][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.423][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.424][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:04.424][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:04.425][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:04.426][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:04.427][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.427][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.428][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:04.429][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:04.429][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.430][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.431][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.432][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.432][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.433][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.434][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:04.435][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:04.435][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.436][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.437][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:04.438][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:04.438][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.439][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.440][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.440][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.441][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.442][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.443][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:04.443][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:04.444][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.445][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.446][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.446][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.447][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.448][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.448][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.449][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.450][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.451][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.451][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.452][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.453][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.454][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.454][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:04.455][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:04.456][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.457][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.457][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:04.458][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:04.459][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.460][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.460][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-10-15 08:06:04.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:04.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:04.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:04.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:04.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:04.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:04.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.470][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:04.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:04.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.473][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:04.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:04.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.477][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:04.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:04.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.489][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:04.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:04.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.491][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:04.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:04.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.494][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:04.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:04.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:04.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:04.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.500][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:04.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:04.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.503][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:04.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:04.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.509][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.515][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:04.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:04.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.518][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:04.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:04.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.521][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:04.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:04.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.524][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.542][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.545][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.548][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.551][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:04.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:04.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.554][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:04.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:04.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.557][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:04.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:04.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.560][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:04.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:04.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.563][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:04.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:04.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.566][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:04.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:04.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.579][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2022-10-15 08:06:04.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:04.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:04.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:04.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:04.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:04.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:04.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:04.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:04.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:04.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:04.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:04.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.593][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:04.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:04.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.596][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:04.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:04.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.605][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:04.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:04.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.608][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:04.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:04.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.610][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:04.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:04.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.613][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:04.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:04.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.622][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:04.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:04.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.625][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:04.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:04.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.639][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.642][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.645][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:04.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:04.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.648][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:04.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:04.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.651][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:04.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:04.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.654][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:04.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:04.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.657][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:04.657][private$selectFields]
biodb.TRACE[2022-10-15 08:06:04.658][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:06:04.659][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:06:04.659][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:04.660][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:04.661][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:04.662][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.662][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.663][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:04.664][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:04.665][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.665][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.666][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.667][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.668][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.668][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.669][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:04.670][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:04.671][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.671][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.672][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:04.673][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:04.673][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.674][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.675][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.676][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.676][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.677][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.678][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:04.679][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:04.679][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.680][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.681][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.681][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.682][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.683][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.684][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.684][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.685][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.686][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.687][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.687][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.688][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.689][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.689][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:04.690][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:04.691][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.692][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.692][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:04.693][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:04.694][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.694][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.695][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:04.696][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:04.697][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.697][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.698][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:04.699][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:04.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.700][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.701][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.702][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.702][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.703][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.704][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:04.704][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:04.705][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.706][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.707][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:04.707][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:04.708][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.709][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.709][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.710][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.711][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.712][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.712][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:04.713][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:04.714][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.714][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.715][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.716][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.717][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.717][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.718][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.719][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.720][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.720][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.721][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.722][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.722][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.723][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.724][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:04.725][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:04.725][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.726][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.727][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:04.728][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:04.728][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.729][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.730][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-10-15 08:06:04.731][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-10-15 08:06:04.731][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:04.732][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:04.733][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.734][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.734][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:04.735][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:04.736][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.736][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.737][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.738][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.739][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.739][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.740][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:04.741][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:04.742][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.742][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.743][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:04.744][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:04.745][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.745][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.746][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.747][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.748][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.748][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.749][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.750][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.751][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.751][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.752][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.753][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.753][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.754][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.755][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.756][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.756][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.757][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.758][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:04.759][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:04.759][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.760][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.761][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:04.761][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:04.762][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.763][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.764][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-10-15 08:06:04.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:04.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:04.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:04.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:04.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:04.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:04.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.773][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:04.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:04.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.776][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:04.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:04.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.779][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:04.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:04.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.791][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:04.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:04.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.799][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:04.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:04.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.802][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:04.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:04.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:04.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:04.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.808][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:04.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:04.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.811][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:04.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:04.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.840][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.843][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.846][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.849][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:04.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:04.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.852][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:04.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:04.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.855][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:04.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:04.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.858][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:04.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:04.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.861][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:04.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:04.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.864][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:04.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:04.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.870][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2022-10-15 08:06:04.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:04.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:04.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:04.876][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:04.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:04.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:04.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:04.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:04.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:04.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:04.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:04.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.885][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:04.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:04.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.888][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:04.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:04.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.896][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:04.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:04.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.899][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:04.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:04.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.902][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:04.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:04.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:04.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:04.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.908][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.911][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.914][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:04.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:04.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.917][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:04.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:04.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.932][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.935][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.938][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:04.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:04.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.941][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:04.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:04.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.943][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:04.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:04.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.946][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:04.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:04.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.949][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:04.950][private$selectFields]
biodb.TRACE[2022-10-15 08:06:04.951][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:06:04.951][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:06:04.952][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:04.953][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:04.954][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:04.954][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.955][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.956][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:04.956][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:04.957][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.958][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.959][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.959][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.960][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.961][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.961][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:04.962][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:04.963][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.964][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.964][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:04.965][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:04.966][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.967][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.967][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.968][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:04.969][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.969][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.970][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:04.971][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:04.972][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.972][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.973][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.974][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:04.975][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.975][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.976][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.977][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:04.977][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.978][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.979][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.980][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:04.980][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.981][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.982][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:04.983][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:04.983][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.984][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.985][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:04.985][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:04.986][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.987][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.988][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:04.988][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:04.989][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.990][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.990][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:04.991][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:04.992][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.993][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.993][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.994][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:04.995][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.996][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.996][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:04.997][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:04.998][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:04.998][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:04.999][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:05.000][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:05.001][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.001][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.002][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.003][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.004][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.004][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.005][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:05.006][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:05.007][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.007][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.008][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.009][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.009][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.010][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.011][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.012][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.012][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.013][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.014][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.015][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.015][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.016][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.023][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:05.024][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:05.025][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.026][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.027][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:05.028][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:05.028][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.029][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.030][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-10-15 08:06:05.031][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-10-15 08:06:05.032][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:05.032][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:05.033][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.034][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.034][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:05.035][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:05.036][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.037][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.037][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.038][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.039][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.040][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.040][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:05.041][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:05.042][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.042][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.043][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:05.044][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:05.045][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.045][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.046][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.047][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.047][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.048][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.049][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.050][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.050][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.051][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.052][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.052][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.053][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.054][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.054][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.055][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.056][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.057][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.057][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:05.058][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:05.059][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.059][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.060][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:05.061][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:05.062][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.062][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.063][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-10-15 08:06:05.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:05.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:05.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:05.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:05.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:05.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:05.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.073][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:05.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:05.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.076][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:05.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:05.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.078][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:05.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:05.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.090][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:05.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:05.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.093][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:05.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:05.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.096][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:05.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:05.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.099][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:05.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:05.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.102][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:05.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:05.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:05.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:05.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.108][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.111][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.114][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.135][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.137][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.140][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.143][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:05.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:05.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.146][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:05.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:05.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.149][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:05.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:05.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.152][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:05.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:05.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.155][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:05.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:05.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.158][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:05.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:05.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.165][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2022-10-15 08:06:05.165][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:06:05.166][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:06:05.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:05.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:05.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:05.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:05.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:05.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:05.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:05.211][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:06:05.213][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:06:05.214][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2022-10-15 08:06:05.215][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:06:05.216][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2022-10-15 08:06:05.218][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:06:05.220][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:06:05.221][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2022-10-15 08:06:05.222][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:06:05.223][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2022-10-15 08:06:05.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:05.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:05.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:05.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:05.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:05.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:05.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:05.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:05.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:05.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:05.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:05.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:05.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:05.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:05.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:05.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:05.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:05.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:05.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:05.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:05.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:05.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:05.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:05.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:05.280][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:06:05.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:05.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:05.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:05.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:05.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:05.288][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:05.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:05.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:05.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:05.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:05.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:05.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.295][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:05.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:05.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.298][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:05.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:05.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.307][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:05.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:05.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.310][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:05.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:05.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.313][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:05.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:05.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.316][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:05.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:05.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.319][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.322][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.325][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:05.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:05.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.328][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:05.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:05.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.343][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.346][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.349][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:05.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:05.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.352][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:05.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:05.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.355][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:05.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:05.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.358][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:05.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:05.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.361][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:05.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:05.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.364][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:05.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:05.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.367][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:05.368][private$selectFields]
biodb.TRACE[2022-10-15 08:06:05.369][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:06:05.370][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:06:05.370][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:05.371][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:05.372][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:05.373][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.373][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.374][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:05.375][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:05.376][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.376][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.377][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.378][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.379][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.379][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.380][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:05.381][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:05.382][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.382][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.383][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:05.384][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:05.385][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.385][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.386][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.387][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.388][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.389][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:05.390][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:05.391][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.391][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.392][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.393][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.394][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.394][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.395][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.396][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.397][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.397][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.398][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.399][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.400][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.400][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.401][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:05.402][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:05.403][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.403][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.404][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:05.405][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:05.406][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.406][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.407][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:05.408][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:05.409][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.409][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.410][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:05.411][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:05.412][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.412][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.413][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:05.414][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:05.414][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.415][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.416][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.417][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.417][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.418][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.419][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:05.420][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:05.420][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.421][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.422][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:05.423][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:05.423][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.424][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.425][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.426][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.426][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.427][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.428][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:05.429][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:05.429][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.430][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.431][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.432][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.432][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.433][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.434][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.435][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.435][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.436][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.437][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.438][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.438][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.439][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.440][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:05.441][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:05.441][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.442][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.443][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:05.444][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:05.444][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.445][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.446][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:05.447][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:05.447][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.448][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.449][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:05.450][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:05.450][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:05.451][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:05.452][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.453][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.453][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:05.454][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:05.455][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.455][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.456][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.457][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.458][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.458][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.459][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:05.460][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:05.461][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.462][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.462][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:05.463][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:05.464][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.465][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.465][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.466][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.467][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.468][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.468][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:05.469][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:05.470][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.471][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.471][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.472][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.473][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.474][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.474][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.475][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.481][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.481][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.482][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.484][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.484][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.485][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.486][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:05.487][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:05.487][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.488][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.489][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:05.490][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:05.490][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.491][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.492][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-10-15 08:06:05.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:05.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:05.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:05.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:05.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:05.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:05.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.502][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:05.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:05.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.505][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:05.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:05.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.507][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:05.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:05.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.520][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:05.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:05.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.522][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:05.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:05.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.525][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:05.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:05.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.528][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:05.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:05.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.531][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:05.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:05.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.534][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:05.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:05.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.537][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.540][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.543][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.546][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:05.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:05.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.549][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:05.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:05.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.552][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:05.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:05.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.572][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.575][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.578][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.581][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:05.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:05.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.584][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:05.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:05.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.587][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:05.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:05.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.590][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:05.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:05.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.593][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:05.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:05.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.596][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:05.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:05.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.603][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2022-10-15 08:06:05.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:05.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:05.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:05.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:05.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:05.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:05.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:05.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:05.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:05.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:05.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:05.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.618][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:05.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:05.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.621][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:05.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:05.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.630][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:05.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:05.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.633][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:05.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:05.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:05.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:05.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:05.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:05.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.641][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.647][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:05.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:05.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.650][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:05.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:05.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.665][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.668][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.671][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:05.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:05.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.674][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:05.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:05.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.676][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:05.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:05.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.679][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:05.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:05.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.682][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:05.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:05.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.685][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:05.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:05.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.688][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:05.689][private$selectFields]
biodb.TRACE[2022-10-15 08:06:05.690][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:06:05.690][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:06:05.691][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:05.692][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:05.693][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:05.693][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.694][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.695][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:05.695][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:05.696][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.697][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.698][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.698][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.700][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.701][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:05.701][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:05.702][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.703][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.708][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:05.709][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:05.710][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.711][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.712][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.713][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.713][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.714][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.715][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:05.715][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:05.716][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.717][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.718][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.718][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.719][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.720][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.721][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.721][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.722][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.723][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.724][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.724][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.725][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.726][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.726][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:05.727][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:05.728][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.729][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.729][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:05.730][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:05.731][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.731][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.732][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:05.733][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:05.734][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.734][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.735][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:05.736][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:05.736][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.737][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.738][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:05.739][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:05.739][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.740][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.741][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.741][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.742][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.743][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.744][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:05.744][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:05.745][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.746][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.746][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:05.747][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:05.748][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.749][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.749][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.750][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.751][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.752][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.752][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:05.753][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:05.754][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.754][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.755][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.756][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.757][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.757][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.758][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.759][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.760][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.760][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.761][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.762][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.763][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.763][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.764][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:05.765][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:05.766][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.766][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.767][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:05.768][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:05.768][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.769][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.770][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:05.771][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:05.771][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.772][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.773][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:05.774][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:05.774][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:05.775][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:05.776][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.776][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.777][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:05.778][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:05.779][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.779][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.780][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.781][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.781][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.782][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.783][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:05.784][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:05.784][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.785][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.786][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:05.786][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:05.787][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.788][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.789][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.789][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.790][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.791][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.791][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:05.792][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:05.793][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.794][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.794][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.795][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.796][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.796][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.797][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.798][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.799][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.799][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.800][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.801][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.802][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.802][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.803][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:05.804][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:05.804][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.805][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.806][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:05.807][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:05.807][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.808][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.809][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-10-15 08:06:05.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:05.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:05.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:05.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:05.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:05.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:05.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.819][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:05.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:05.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.822][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:05.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:05.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.825][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:05.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:05.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.836][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:05.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:05.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.839][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:05.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:05.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.842][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:05.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:05.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:05.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:05.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:05.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:05.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:05.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:05.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.863][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:05.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:05.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.866][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:05.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:05.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.869][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:05.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:05.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:05.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:05.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.890][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.893][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.896][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:05.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.899][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:05.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:05.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.902][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:05.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:05.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.905][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:05.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:05.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.911][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:05.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:05.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.917][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:05.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:05.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.923][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:05.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:05.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.937][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2022-10-15 08:06:05.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:05.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:05.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:05.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:05.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:05.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:05.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:05.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:05.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:05.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:05.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:05.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.963][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:05.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:05.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.967][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:05.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:05.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:05.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.979][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:05.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:05.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.983][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:05.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:05.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:05.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:05.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:05.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:05.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.995][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:05.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:05.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:05.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.002][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:06.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:06.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.006][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:06.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:06.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.022][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.026][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.030][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.034][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:06.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:06.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.038][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:06.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:06.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.041][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:06.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:06.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:06.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:06.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.048][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:06.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:06.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.052][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:06.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:06.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.056][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:06.057][private$selectFields]
biodb.TRACE[2022-10-15 08:06:06.058][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:06:06.059][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:06:06.060][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:06.061][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:06.062][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:06.063][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.064][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.065][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:06.066][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:06.067][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.068][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.069][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.070][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.071][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.072][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.072][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:06.074][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:06.075][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.075][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.076][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:06.077][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:06.078][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.079][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.080][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.081][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.083][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.084][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.085][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:06.086][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:06.087][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.087][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.088][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.089][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.090][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.091][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.092][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.093][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.093][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.094][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.095][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.096][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.097][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.098][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.099][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:06.100][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:06.101][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.102][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.102][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:06.104][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:06.104][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.105][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.106][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:06.107][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:06.108][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.109][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.110][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:06.111][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:06.112][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.113][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.114][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:06.115][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:06.116][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.117][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.118][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.119][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.120][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.121][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.122][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:06.123][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:06.124][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.125][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.126][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:06.127][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:06.128][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.129][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.130][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.131][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.131][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.132][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.133][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:06.134][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:06.135][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.136][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.137][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.138][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.139][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.140][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.141][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.142][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.143][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.144][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.145][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.146][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.147][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.148][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.149][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:06.150][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:06.151][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.152][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.152][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:06.153][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:06.154][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.155][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.156][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:06.157][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:06.158][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.158][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.159][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-10-15 08:06:06.160][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-10-15 08:06:06.161][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:06.162][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:06.163][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.164][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.165][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:06.166][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:06.167][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.168][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.169][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.170][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.171][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.172][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.173][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:06.174][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:06.175][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.176][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.177][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:06.178][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:06.179][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.180][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.181][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.182][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.183][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.184][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.184][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.185][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.186][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.187][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.188][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.189][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.189][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.190][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.191][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.192][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.193][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.194][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.195][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:06.196][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:06.197][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.198][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.199][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:06.200][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:06.201][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.202][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.203][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-10-15 08:06:06.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:06.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:06.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:06.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:06.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:06.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:06.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.216][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:06.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:06.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.220][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:06.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:06.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.224][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:06.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:06.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.241][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:06.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:06.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.245][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:06.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:06.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.248][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:06.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:06.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:06.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:06.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:06.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:06.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.267][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:06.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:06.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.271][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.306][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.309][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.313][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.316][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:06.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:06.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.321][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:06.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:06.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.325][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:06.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:06.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.329][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:06.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:06.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.333][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:06.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:06.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.336][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:06.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:06.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.343][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2022-10-15 08:06:06.344][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:06:06.345][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:06:06.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:06.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:06.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:06.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:06.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:06.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:06.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:06.386][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:06:06.388][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:06:06.389][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2022-10-15 08:06:06.390][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:06:06.391][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2022-10-15 08:06:06.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:06.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:06.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:06.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:06.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:06.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:06.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:06.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:06.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:06.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:06.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:06.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:06.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:06.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:06.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:06.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:06.429][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:06.430][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:06.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:06.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:06.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:06.436][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:06.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:06.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:06.446][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:06:06.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:06.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:06.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:06.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:06.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:06.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:06.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:06.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:06.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:06.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:06.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:06.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.461][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:06.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:06.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.464][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:06.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:06.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.473][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:06.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:06.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.476][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:06.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:06.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.478][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:06.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:06.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.481][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:06.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:06.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.490][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:06.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:06.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.493][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:06.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:06.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.513][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.516][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.519][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:06.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:06.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.522][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:06.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:06.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.525][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:06.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:06.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.528][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:06.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:06.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.531][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:06.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:06.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.534][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:06.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:06.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.537][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:06.537][private$selectFields]
biodb.TRACE[2022-10-15 08:06:06.538][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:06:06.539][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:06:06.539][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:06.540][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:06.541][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:06.542][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.542][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.543][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:06.544][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:06.545][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.545][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.546][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.547][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.547][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.548][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.549][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:06.549][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:06.550][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.551][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.552][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:06.552][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:06.553][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.554][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.554][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.555][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.556][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.557][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.557][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:06.558][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:06.559][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.560][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.560][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.561][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.562][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.562][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.563][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.564][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.565][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.566][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.567][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.567][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.568][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.569][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:06.569][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:06.570][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.571][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.572][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:06.572][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:06.573][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.574][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.574][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:06.575][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:06.576][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.577][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.577][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:06.578][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:06.579][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.579][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.580][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:06.581][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:06.582][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.582][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.583][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.584][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.584][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.585][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.586][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:06.587][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:06.587][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.588][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.589][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:06.590][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:06.590][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.591][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.592][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.592][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.593][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.594][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.595][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:06.595][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:06.596][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.597][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.597][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.598][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.599][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.600][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.601][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.601][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.602][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.603][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.603][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.604][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.606][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.606][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:06.607][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:06.608][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.609][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.609][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:06.610][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:06.611][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.611][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.612][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:06.613][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:06.614][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.614][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.615][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:06.616][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:06.617][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:06.617][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:06.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.619][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.619][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:06.620][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:06.621][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.622][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.622][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.623][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.624][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.625][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.625][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:06.626][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:06.627][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.627][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.628][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:06.629][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:06.630][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.630][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.631][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.632][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.633][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.633][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.634][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:06.635][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:06.635][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.636][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.637][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.638][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.639][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.640][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.641][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.641][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.642][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.643][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.643][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.644][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.645][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.645][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:06.646][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:06.647][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.648][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.648][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:06.649][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:06.650][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.650][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.651][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-10-15 08:06:06.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:06.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:06.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:06.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:06.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:06.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:06.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.661][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:06.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:06.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.664][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:06.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:06.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.667][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:06.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:06.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.679][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:06.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:06.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.682][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:06.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:06.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.685][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:06.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:06.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:06.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:06.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:06.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:06.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.694][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:06.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:06.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.697][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.700][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.703][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.706][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:06.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:06.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.709][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:06.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:06.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.712][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:06.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:06.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.738][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.741][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.744][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.747][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:06.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:06.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.750][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:06.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:06.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.753][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:06.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:06.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.756][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:06.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:06.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.759][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:06.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:06.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.762][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:06.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:06.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.769][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2022-10-15 08:06:06.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:06.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:06.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:06.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:06.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:06.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:06.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:06.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:06.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:06.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:06.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:06.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.784][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:06.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:06.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.787][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:06.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:06.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.796][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:06.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:06.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.799][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:06.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:06.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:06.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:06.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:06.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:06.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.813][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:06.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:06.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.816][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:06.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:06.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.831][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.834][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.837][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:06.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:06.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.839][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:06.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:06.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.842][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:06.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:06.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.845][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:06.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:06.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.848][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:06.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:06.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.851][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:06.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:06.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.854][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:06.855][private$selectFields]
biodb.TRACE[2022-10-15 08:06:06.856][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:06:06.857][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:06:06.858][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:06.858][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:06.859][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:06.860][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.861][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.861][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:06.862][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:06.863][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.864][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.864][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.865][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.866][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.866][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.867][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:06.868][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:06.869][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.869][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.870][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:06.871][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:06.871][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.872][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.873][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.874][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.874][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.875][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.876][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:06.876][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:06.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.878][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.879][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.879][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.880][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.881][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.881][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.882][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.883][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.884][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.884][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.885][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.886][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.886][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.887][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:06.888][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:06.889][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.889][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.890][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:06.891][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:06.891][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.892][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.893][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:06.894][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:06.894][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.895][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.896][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:06.897][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:06.897][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.898][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.899][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:06.899][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:06.900][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.901][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.902][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.902][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.903][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.904][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.904][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:06.905][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:06.906][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.907][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.907][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:06.908][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:06.909][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.910][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.910][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.911][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.912][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.912][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.913][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:06.914][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:06.915][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.915][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.916][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.917][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.917][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.918][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.919][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.920][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.920][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.921][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.922][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.923][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.923][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.924][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.925][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:06.925][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:06.926][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.927][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.928][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:06.928][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:06.929][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.930][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.930][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:06.931][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:06.932][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.933][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.933][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-10-15 08:06:06.934][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-10-15 08:06:06.935][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:06.936][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:06.936][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.937][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.938][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:06.939][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:06.939][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.940][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.941][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.941][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.942][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.943][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.944][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:06.944][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:06.945][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.946][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.946][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:06.947][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:06.948][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.949][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.949][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.950][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:06.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.952][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.952][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.958][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:06.959][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.960][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.961][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.961][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:06.962][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.963][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.964][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.964][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:06.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.966][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.966][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:06.967][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:06.968][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.969][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.969][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:06.970][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:06.971][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.972][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.972][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-10-15 08:06:06.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:06.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:06.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:06.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:06.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:06.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:06.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.982][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:06.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:06.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.985][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:06.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:06.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.987][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:06.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:06.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:06.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:06.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:06.999][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:07.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:07.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.002][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:07.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:07.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.005][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:07.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:07.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:07.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:07.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:07.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:07.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.014][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:07.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:07.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.017][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.023][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.044][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.047][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.050][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.053][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:07.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:07.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.056][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:07.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:07.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.059][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:07.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:07.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.062][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:07.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:07.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.065][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:07.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:07.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.068][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:07.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:07.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.075][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2022-10-15 08:06:07.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:07.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:07.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:07.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:07.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:07.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:07.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:07.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:07.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:07.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:07.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:07.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.090][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:07.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:07.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.093][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:07.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:07.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.102][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:07.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:07.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.105][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:07.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:07.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.108][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:07.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:07.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.111][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:07.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:07.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.114][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.120][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:07.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:07.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.123][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:07.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:07.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.138][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.141][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.144][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:07.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:07.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.147][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:07.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:07.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.150][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:07.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:07.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.153][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:07.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:07.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.156][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:07.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:07.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.159][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:07.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:07.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.162][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:07.163][private$selectFields]
biodb.TRACE[2022-10-15 08:06:07.163][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:06:07.164][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:06:07.165][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:07.166][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:07.166][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:07.167][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.168][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.169][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:07.169][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:07.170][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.171][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.172][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.172][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.173][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.174][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.175][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:07.175][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:07.176][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.177][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.178][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:07.178][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:07.179][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.180][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.181][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.181][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.187][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.188][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.189][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:07.190][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:07.191][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.191][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.192][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.193][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.194][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.194][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.195][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.196][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.197][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.197][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.198][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.199][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.200][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.201][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.201][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:07.202][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:07.203][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.204][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.204][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:07.205][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:07.206][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.206][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.207][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:07.208][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:07.209][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.209][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.210][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:07.211][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:07.212][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.212][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.213][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:07.214][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:07.214][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.215][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.216][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.217][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.217][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.218][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.219][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:07.220][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:07.220][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.221][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.222][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:07.222][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:07.223][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.224][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.224][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.225][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.226][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.227][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.227][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:07.228][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:07.229][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.230][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.230][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.231][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.232][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.233][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.234][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.235][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.235][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.236][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.237][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.238][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.239][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:07.240][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:07.240][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.241][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.242][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:07.243][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:07.243][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.244][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.245][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:07.246][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:07.246][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.247][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.248][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-10-15 08:06:07.248][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-10-15 08:06:07.249][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:07.250][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:07.251][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.251][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.252][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:07.253][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:07.254][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.254][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.255][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.256][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.257][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.257][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.258][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:07.259][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:07.259][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.260][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.261][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:07.262][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:07.262][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.263][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.264][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.265][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.265][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.266][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.267][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.267][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.268][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.269][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.270][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.270][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.271][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.272][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.272][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.273][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.274][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.275][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.275][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:07.276][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:07.277][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.277][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.278][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:07.279][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:07.280][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.280][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.281][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-10-15 08:06:07.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:07.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:07.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:07.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:07.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:07.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:07.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.291][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:07.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:07.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.294][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:07.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:07.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.297][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:07.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:07.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.309][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:07.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:07.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.312][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:07.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:07.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.315][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:07.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:07.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.318][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:07.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:07.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:07.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:07.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:07.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:07.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.330][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.332][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.353][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.356][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.359][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.362][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:07.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:07.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.365][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:07.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:07.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.368][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:07.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:07.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.371][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:07.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:07.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.374][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:07.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:07.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.377][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:07.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:07.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.384][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2022-10-15 08:06:07.385][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:06:07.385][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:06:07.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:07.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:07.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:07.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:07.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:07.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:07.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:07.429][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-10-15 08:06:07.432][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:06:07.433][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2022-10-15 08:06:07.434][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:06:07.434][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2022-10-15 08:06:07.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:07.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:07.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:07.441][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:07.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:07.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:07.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:07.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:07.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:07.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:07.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:07.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:07.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:07.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:07.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:07.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:07.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:07.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:07.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:07.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:07.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:07.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:07.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:07.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:07.485][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:06:07.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:07.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:07.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:07.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:07.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:07.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:07.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:07.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:07.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:07.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:07.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:07.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.500][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:07.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:07.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.503][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:07.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:07.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.512][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:07.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:07.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.515][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:07.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:07.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:07.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:07.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:07.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:07.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.530][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:07.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:07.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.533][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:07.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:07.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.548][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.550][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.553][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:07.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:07.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.556][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:07.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:07.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.559][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:07.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:07.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.562][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:07.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:07.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.565][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:07.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:07.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.568][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:07.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:07.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.571][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:07.572][private$selectFields]
biodb.TRACE[2022-10-15 08:06:07.573][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:06:07.573][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:06:07.574][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:07.575][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:07.576][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:07.576][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.577][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.578][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:07.578][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:07.579][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.580][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.581][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.581][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.582][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.583][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.583][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:07.584][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:07.585][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.586][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.586][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:07.587][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:07.588][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.588][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.589][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.590][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.591][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.591][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.592][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:07.593][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:07.594][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.594][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.595][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.596][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.596][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.597][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.598][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.599][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.599][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.600][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.601][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.602][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.602][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.603][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.604][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:07.604][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:07.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.606][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.607][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:07.607][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:07.608][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.609][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.610][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:07.610][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:07.611][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.612][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.612][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:07.613][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:07.614][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.615][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.615][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:07.616][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:07.617][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.617][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.618][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.619][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.620][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.621][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:07.622][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:07.623][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.623][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.624][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:07.625][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:07.626][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.626][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.627][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.628][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.628][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.629][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.630][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:07.631][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:07.631][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.632][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.638][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.639][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.640][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.641][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.642][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.642][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.643][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.644][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.645][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.645][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.646][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.647][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.648][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:07.648][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:07.649][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.650][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.651][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:07.651][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:07.652][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.653][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.653][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:07.654][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:07.655][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.656][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.656][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:07.657][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:07.658][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:07.659][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:07.659][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.660][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.661][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:07.661][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:07.662][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.663][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.664][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.664][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.665][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.666][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.666][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:07.667][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:07.668][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.669][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.669][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:07.670][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:07.671][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.671][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.672][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.673][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.674][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.674][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.675][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:07.676][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:07.676][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.677][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.678][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.679][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.679][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.680][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.681][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.681][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.682][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.683][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.683][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.684][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.685][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.685][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.686][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:07.687][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:07.688][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.688][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.689][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:07.690][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:07.691][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.691][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.692][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-10-15 08:06:07.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:07.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:07.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:07.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:07.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:07.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:07.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.702][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:07.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:07.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.705][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:07.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:07.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.708][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:07.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:07.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.719][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:07.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:07.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.722][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:07.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:07.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.725][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:07.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:07.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:07.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:07.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:07.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:07.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.734][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:07.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:07.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.740][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.746][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:07.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:07.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.749][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:07.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:07.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.752][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:07.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:07.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.773][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.776][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.779][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.782][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:07.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:07.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.785][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:07.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:07.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.788][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:07.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:07.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.791][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:07.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:07.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.794][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:07.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:07.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.797][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:07.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:07.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.804][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2022-10-15 08:06:07.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:07.805][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:07.806][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:07.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:07.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:07.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:07.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:07.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:07.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:07.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:07.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:07.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.819][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:07.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:07.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.822][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:07.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:07.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.831][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:07.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:07.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.834][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:07.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:07.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:07.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:07.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:07.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:07.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.845][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.848][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:07.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:07.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.851][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:07.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:07.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.872][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.875][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.878][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:07.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:07.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.881][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:07.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:07.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.883][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:07.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:07.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.886][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:07.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:07.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.889][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:07.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:07.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.892][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:07.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:07.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.895][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:07.896][private$selectFields]
biodb.TRACE[2022-10-15 08:06:07.896][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:06:07.897][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:06:07.898][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:07.898][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:07.899][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:07.900][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.901][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.901][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:07.902][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:07.903][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.903][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.904][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.905][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.906][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.906][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.907][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:07.908][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:07.908][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.909][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.910][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:07.910][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:07.911][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.912][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.913][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.913][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.914][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.915][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.915][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:07.916][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:07.917][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.917][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.918][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.919][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.920][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.920][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.921][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.922][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.922][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.923][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.924][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.925][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.925][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.926][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.927][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:07.927][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:07.928][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.929][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.930][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:07.930][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:07.931][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.932][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.932][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:07.933][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:07.934][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.935][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.936][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:07.936][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:07.937][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.938][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.938][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:07.939][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:07.940][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.941][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.941][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.942][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.943][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.944][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.944][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:07.945][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:07.946][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.947][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.947][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:07.948][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:07.949][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.950][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.950][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.951][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.952][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.953][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.953][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:07.954][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:07.955][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.956][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.956][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.957][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.958][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.959][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.960][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.960][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.961][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.962][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.963][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.963][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:07.964][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.965][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.966][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:07.966][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:07.967][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.968][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.969][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:07.969][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:07.970][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.971][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.972][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:07.972][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:07.973][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.974][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.975][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-10-15 08:06:07.975][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-10-15 08:06:07.976][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:07.977][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:07.978][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.978][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.979][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:07.980][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:07.980][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.981][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.982][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.983][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:07.984][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.984][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.985][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:07.986][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:07.986][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.987][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.988][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:07.989][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:07.989][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.990][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.991][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.992][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:07.992][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.993][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.994][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.994][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:07.995][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.996][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.997][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.997][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:07.998][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:07.999][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:07.999][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:08.000][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:08.001][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.002][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.002][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:08.003][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:08.004][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.005][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.005][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:08.006][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:08.007][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.007][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.008][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-10-15 08:06:08.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:08.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:08.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:08.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:08.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:08.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:08.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.018][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:08.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:08.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.021][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:08.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:08.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.024][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:08.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:08.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:08.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:08.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:08.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:08.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:08.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:08.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.036][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:08.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:08.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.039][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:08.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:08.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.042][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:08.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:08.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:08.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:08.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.047][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:08.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:08.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:08.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:08.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.053][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:08.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:08.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:08.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:08.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.059][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:08.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:08.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:08.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:08.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:08.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:08.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:08.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:08.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:08.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:08.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:08.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:08.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:08.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:08.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.080][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:08.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:08.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.083][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:08.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:08.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.086][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:08.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:08.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.094][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:08.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:08.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.098][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:08.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:08.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.101][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:08.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:08.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.104][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:08.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:08.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.107][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:08.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:08.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.110][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:08.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:08.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.116][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2022-10-15 08:06:08.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:08.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:08.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:08.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:08.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:08.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:08.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:08.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:08.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:08.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:08.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:08.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.131][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:08.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:08.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.134][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:08.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:08.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:08.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:08.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:08.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:08.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.142][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:08.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:08.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.145][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:08.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:08.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.148][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:08.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:08.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.151][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:08.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:08.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:08.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:08.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.157][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:08.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:08.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.160][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:08.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:08.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.163][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:08.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:08.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:08.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:08.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:08.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:08.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:08.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:08.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:08.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:08.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.177][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:08.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:08.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.180][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:08.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:08.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.183][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:08.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:08.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.186][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:08.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:08.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.189][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:08.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:08.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.192][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:08.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:08.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.195][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:08.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:08.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.198][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:08.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:08.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.201][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:08.201][private$selectFields]
biodb.TRACE[2022-10-15 08:06:08.202][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:06:08.203][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:06:08.203][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-10-15 08:06:08.204][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:08.205][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:08.206][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.206][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.207][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:08.208][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:08.209][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.209][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.210][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:08.211][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:08.211][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.212][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.213][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:08.214][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:08.214][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.215][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.216][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:08.217][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:08.217][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.218][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.219][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:08.220][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:08.220][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.221][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.222][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:08.222][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:08.223][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.224][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.224][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:08.225][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:08.226][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.227][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.227][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:08.228][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:08.229][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.230][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.230][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:08.231][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:08.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.232][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.233][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:08.234][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:08.235][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.235][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.236][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:08.237][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:08.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.238][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.239][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:08.240][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:08.240][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.241][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.242][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:08.243][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:08.243][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.244][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.245][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:08.246][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:08.246][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.247][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.248][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:08.248][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:08.249][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.250][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.251][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:08.251][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:08.252][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.253][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.253][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:08.254][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:08.255][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.256][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.256][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:08.257][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:08.258][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.258][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.259][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:08.260][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:08.261][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.261][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.262][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:08.263][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:08.264][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.264][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.265][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:08.266][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:08.267][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.267][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.268][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:08.269][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:08.269][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.270][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.271][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:08.272][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:08.272][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.273][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.274][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:08.274][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:08.275][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.276][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.277][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:06:08.277][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:06:08.278][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.279][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.280][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-10-15 08:06:08.280][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-10-15 08:06:08.281][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:08.282][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:08.283][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.283][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.284][ef$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:08.285][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:08.285][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.286][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.287][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:08.288][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:08.288][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.289][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.290][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:08.291][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:08.291][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.292][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.293][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:08.293][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:08.294][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.295][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.296][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:08.296][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:08.297][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.298][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.298][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:08.299][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:08.300][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.301][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.301][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:08.302][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:08.303][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.304][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.304][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:08.305][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:08.306][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.306][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.307][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:08.308][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:08.309][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.309][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.310][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:08.311][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:08.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.317][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.318][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-10-15 08:06:08.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:08.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:08.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:08.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:08.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:08.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:08.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.329][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:08.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:08.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.332][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:08.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:08.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.334][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-10-15 08:06:08.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-10-15 08:06:08.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:08.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:08.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:08.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:08.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:08.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:08.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.346][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:08.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:08.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.349][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:08.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:08.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.352][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:08.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:08.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.355][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:08.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:08.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.358][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:08.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:08.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.361][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:06:08.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:06:08.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:08.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:08.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.367][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:08.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:08.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.369][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:06:08.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:06:08.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:08.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:08.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:08.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:08.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:08.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:08.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:08.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:08.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:08.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:08.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:08.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:08.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.390][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:08.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:08.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.393][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:08.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:08.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.396][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-10-15 08:06:08.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-10-15 08:06:08.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.399][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:08.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:08.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.402][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:08.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:08.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.405][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:08.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:08.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.408][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:08.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:08.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.411][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:08.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:08.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.414][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-15 08:06:08.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-15 08:06:08.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.421][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2022-10-15 08:06:08.421][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:06:08.422][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-10-15 08:06:08.426][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:06:08.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:06:08.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.429][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:06:08.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:06:08.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:08.432][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:06:08.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:06:08.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:08.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-10-15 08:06:08.435][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-10-15 08:06:08.436][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2022-10-15 08:06:08.437][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2022-10-15 08:06:08.438][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-10-15 08:06:08.438][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:08.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:08.440][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:08.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:08.441][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:08.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1354 ]
> 
> proc.time()
   user  system elapsed 
 66.575   2.335 205.506 

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.2.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.15-bioc-longtests/meat/biodbChebi.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: OK


Installation output

biodbChebi.Rcheck/00install.out

* installing *source* package ‘biodbChebi’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)