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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL scHOT
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'scHOT' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'scHOT'
    finding HTML links ... done
    MOB_subset                              html  
    liver                                   html  
    params-set                              html  
    plotColouredExpression                  html  
    plotEgoNetwork                          html  
    plotHigherOrderSequence                 html  
    plotOrderedExpression                   html  
    positionColData-set                     html  
    positionType-set                        html  
    scHOT-class                             html  
    scHOT                                   html  
    scHOT_addTestingScaffold                html  
    scHOT_buildFromMatrix                   html  
    scHOT_buildFromSCE                      html  
    scHOT_calculateGlobalHigherOrderFunction
                                            html  
    scHOT_calculateHigherOrderTestStatistics
                                            html  
    scHOT_estimatePvalues                   html  
    scHOT_output-set                        html  
    scHOT_performPermutationTest            html  
    scHOT_plotPermutationDistributions      html  
    scHOT_setPermutationScaffold            html  
    scHOT_setWeightMatrix                   html  
    scHOT_stripOutput                       html  
    spatialWeightMatrix                     html  
    testingScaffold-set                     html  
    thin                                    html  
    trajectoryWeightMatrix                  html  
    weightMatrix-set                        html  
    weightedPearson                         html  
    weightedSpearman                        html  
    weightedVariance                        html  
    weightedZIKendall                       html  
    weightedZISpearman                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (scHOT)
Making 'packages.html' ... done