############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf oppar.buildbin-libdir && mkdir oppar.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=oppar.buildbin-libdir oppar_1.23.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'oppar' ... ** using staged installation ** libs "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c R_init_oppar.c -o R_init_oppar.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c kernel_estimation.c -o kernel_estimation.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c ks_test.c -o ks_test.o ks_test.c: In function 'ks_sample': ks_test.c:22:9: warning: unused variable 'mx_value' [-Wunused-variable] double mx_value = 0.0; ^~~~~~~~ C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o oppar.dll tmp.def R_init_oppar.o kernel_estimation.o ks_test.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR installing to D:/biocbuild/bbs-3.15-bioc/meat/oppar.buildbin-libdir/00LOCK-oppar/00new/oppar/libs/x64 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'oppar' finding HTML links ... done OPPARList-class html bcm html eset html getSampleOutlier html getSubtypeProbes html gsva html maupin html opa html oppar html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'oppar' as oppar_1.23.0.zip * DONE (oppar)