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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL nethet
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'nethet' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c betamat_diffnet.c -o betamat_diffnet.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o nethet.dll tmp.def betamat_diffnet.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-nethet/00new/nethet/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'mclust::dmvnorm' by 'mvtnorm::dmvnorm' when loading 'nethet'
Warning: replacing previous import 'multtest::update' by 'stats::update' when loading 'nethet'
** help
*** installing help indices
  converting help for package 'nethet'
    finding HTML links ... done
    EXPStep.mix                             html  
    MStepGlasso                             html  
    NetHet-package                          html  
    agg.pval                                html  
    agg.score.iriz.scale                    html  
    agg.score.iriz.shift                    html  
    aggpval                                 html  
    aic.glasso                              html  
    beta.mat                                html  
    beta.mat.diffregr                       html  
    bic.glasso                              html  
    buildDotPlotDataFrame                   html  
    bwprun_mixglasso                        html  
    cv.fold                                 html  
    cv.glasso                               html  
    diffnet_multisplit                      html  
    diffnet_pval                            html  
    diffnet_singlesplit                     html  
    diffregr_multisplit                     html  
    diffregr_pval                           html  
    diffregr_singlesplit                    html  
    dot_plot                                html  
    error.bars                              html  
    est2.my.ev2                             html  
    est2.my.ev2.diffregr                    html  
    est2.my.ev3                             html  
    est2.my.ev3.diffregr                    html  
    est2.ww.mat.diffregr                    html  
    est2.ww.mat2                            html  
    est2.ww.mat2.diffregr                   html  
    export_network                          html  
    func.uinit                              html  
    generate_2networks                      html  
    generate_inv_cov                        html  
    getinvcov                               html  
    ggmgsa_multisplit                       html  
    ggmgsa_singlesplit                      html  
    glasso.invcor                           html  
    glasso.invcov                           html  
    glasso.parcor                           html  
    gsea.highdimT2                          html  
    gsea.iriz                               html  
    gsea.iriz.scale                         html  
    gsea.iriz.shift                         html  
    gsea.t2cov                              html  
    het_cv_glasso                           html  
    hugepath                                html  
    inf.mat                                 html  
    invcov2parcor                           html  
    invcov2parcor_array                     html  
    lambda.max                              html  
    lambdagrid_lin                          html  
    lambdagrid_mult                         html  
    loglik_mix                              html  
    logratio                                html  
    logratio.diffregr                       html  
    make_grid                               html  
    mcov                                    html  
    mixglasso                               html  
    mixglasso_init                          html  
    mixglasso_ncomp_fixed                   html  
    mle.ggm                                 html  
    my.ev2.diffregr                         html  
    my.p.adjust                             html  
    my.ttest                                html  
    my.ttest2                               html  
    mytrunc.method                          html  
    perm.diffregr_pval                      html  
    perm.diffregr_teststat                  html  
    plot.diffnet                            html  
    plot.diffregr                           html  
    plot.ggmgsa                             html  
    plot.nethetclustering                   html  
    plotCV                                  html  
    plot_2networks                          html  
    print.nethetsummary                     html  
    q.matrix.diffregr                       html  
    q.matrix.diffregr3                      html  
    q.matrix.diffregr4                      html  
    q.matrix3                               html  
    q.matrix4                               html  
    scatter_plot                            html  
    screen_aic.glasso                       html  
    screen_bic.glasso                       html  
    screen_cv.glasso                        html  
    screen_cv1se.lasso                      html  
    screen_cvfix.lasso                      html  
    screen_cvmin.lasso                      html  
    screen_cvsqrt.lasso                     html  
    screen_cvtrunc.lasso                    html  
    screen_full                             html  
    screen_shrink                           html  
    shapiro_screen                          html  
    sim_mix                                 html  
    sim_mix_networks                        html  
    sparse_conc                             html  
    summary.diffnet                         html  
    summary.diffregr                        html  
    summary.ggmgsa                          html  
    summary.nethetclustering                html  
    sumoffdiag                              html  
    symmkldist                              html  
    t2cov.lr                                html  
    t2diagcov.lr                            html  
    test.sd                                 html  
    test.t2                                 html  
    tr                                      html  
    twosample_single_regr                   html  
    w.kldist                                html  
    ww.mat                                  html  
    ww.mat.diffregr                         html  
    ww.mat2                                 html  
    ww.mat2.diffregr                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'mclust::dmvnorm' by 'mvtnorm::dmvnorm' when loading 'nethet'
Warning: replacing previous import 'multtest::update' by 'stats::update' when loading 'nethet'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'mclust::dmvnorm' by 'mvtnorm::dmvnorm' when loading 'nethet'
Warning: replacing previous import 'multtest::update' by 'stats::update' when loading 'nethet'
** testing if installed package keeps a record of temporary installation path
* DONE (nethet)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'qcmetrics' is missing or broken
 done