############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL genphen ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'genphen' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'genphen' finding HTML links ... done dichotomous.phenotype.saap html genotype.saap html genotype.saap.msa html genotype.snp html genotype.snp.msa html phenotype.saap html phenotype.snp html runDiagnostics html runGenphen html runPhyloBiasCheck html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: Package 'genphen' is deprecated and will be removed from Bioconductor version 3.16 ** testing if installed package can be loaded from final location Warning: Package 'genphen' is deprecated and will be removed from Bioconductor version 3.16 ** testing if installed package keeps a record of temporary installation path * DONE (genphen) Making 'packages.html' ... done