############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL dce ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'dce' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'dce' finding HTML links ... done as.data.frame.dce html as_adjmat html create_random_DAG html dce-methods html dce_nb html df_pathway_statistics html estimate_latent_count html g2dag html get_pathway_info html get_pathways html get_prediction_counts html graph2df html graph_union html pcor html permutation_test html plot.dce html plot_network html propagate_gene_edges html resample_edge_weights html rlm_dce html simulate_data-methods html summary.rlm_dce html topologically_ordering html trueEffects html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dce) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'cBioPortalData' is missing or broken done