############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf compEpiTools.buildbin-libdir && mkdir compEpiTools.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=compEpiTools.buildbin-libdir compEpiTools_1.29.4.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'compEpiTools' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built. ** help *** installing help indices converting help for package 'compEpiTools' finding HTML links ... done GR2fasta-methods html GRanges2ucsc-methods html GRangesInPromoters-methods html GRannotate-methods html GRannotateSimple html GRbaseCoverage-methods html GRcoverage-methods html GRcoverageSummit-methods html GRenrichment-methods html GRmidpoint-methods html GRsetwidth html TSS html compEpiTools-package html countOverlapsInBins-methods html distanceFromTSS-methods html enhancers html findLncRNA html getPromoterClass-methods html finding level-2 HTML links ... done heatmapData html heatmapPlot html makeGtfFromDb html matchEnhancers html overlapOfGRanges-methods html palette2d html plotStallingIndex html simplifyGOterms html stallingIndex html topGOres html ucsc2GRanges html unionMaxScore-methods html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built. Warning: Package 'compEpiTools' is deprecated and will be removed from Bioconductor version 3.16 ** testing if installed package can be loaded from final location groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built. Warning: Package 'compEpiTools' is deprecated and will be removed from Bioconductor version 3.16 ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'compEpiTools' as compEpiTools_1.29.4.zip * DONE (compEpiTools)