Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-03-18 11:07:03 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for biomformat on riesling1


To the developers/maintainers of the biomformat package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biomformat.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 181/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biomformat 1.23.0  (landing page)
Paul J. McMurdie
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/biomformat
git_branch: master
git_last_commit: 0ddeea2
git_last_commit_date: 2021-10-26 12:24:06 -0400 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: biomformat
Version: 1.23.0
Command: rm -rf biomformat.buildbin-libdir && mkdir biomformat.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=biomformat.buildbin-libdir biomformat_1.23.0.tar.gz
StartedAt: 2022-03-17 20:55:57 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 20:57:15 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 78.3 seconds
RetCode: 0
Status:   OK  
PackageFile: biomformat_1.23.0.zip
PackageFileSize: 495.2 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf biomformat.buildbin-libdir && mkdir biomformat.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=biomformat.buildbin-libdir biomformat_1.23.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'biomformat' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'nrow' from package 'base' in package 'biomformat'
Creating a generic function for 'ncol' from package 'base' in package 'biomformat'
Creating a generic function for 'rownames' from package 'base' in package 'biomformat'
Creating a generic function for 'colnames' from package 'base' in package 'biomformat'
** help
*** installing help indices
  converting help for package 'biomformat'
    finding HTML links ... done
    biom-class                              html  
    biom-methods                            html  
    finding level-2 HTML links ... done

    biom-package                            html  
    biom_data-methods                       html  
Rd warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpUVKYNF/R.INSTALL32206d4c219d/biomformat/man/biom_data-methods.Rd:46: missing link 'plyr-package'
    biom_shape-methods                      html  
    colnames-methods                        html  
    header-methods                          html  
    make_biom                               html  
    matrix_element_type-methods             html  
    ncol-methods                            html  
    nrow-methods                            html  
    observation_metadata-methods            html  
Rd warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpUVKYNF/R.INSTALL32206d4c219d/biomformat/man/observation_metadata-methods.Rd:30: missing link 'plyr-package'
    read_biom                               html  
    read_hdf5_biom                          html  
    rownames-methods                        html  
    sample_metadata-methods                 html  
Rd warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpUVKYNF/R.INSTALL32206d4c219d/biomformat/man/sample_metadata-methods.Rd:30: missing link 'plyr-package'
    show-methods                            html  
    write_biom                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'biomformat' as biomformat_1.23.0.zip
* DONE (biomformat)