Pierrick Roger
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/biodbChebi |
| git_branch: master |
| git_last_commit: e6431ec |
| git_last_commit_date: 2022-03-15 08:36:18 -0400 (Tue, 15 Mar 2022) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:07:02 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the biodbChebi package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbChebi.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 174/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbChebi 1.1.1 (landing page) Pierrick Roger
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: biodbChebi |
| Version: 1.1.1 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbChebi.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings biodbChebi_1.1.1.tar.gz |
| StartedAt: 2022-03-17 18:33:20 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 18:35:14 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 113.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: biodbChebi.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbChebi.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings biodbChebi_1.1.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/biodbChebi.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'biodbChebi/DESCRIPTION' ... OK
* this is package 'biodbChebi' version '1.1.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbChebi' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ChebiConn 3.54 1.29 5.76
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
biodbChebi.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL biodbChebi
###
##############################################################################
##############################################################################
* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'biodbChebi' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'biodbChebi'
finding HTML links ... done
ChebiConn html
ChebiEntry html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
DESCRIPTION file of package 'maftools' is missing or broken
done
biodbChebi.Rcheck/tests/testthat.Rout
R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2022-03-17 18:34:06.580][biodb::testContext]
biodb.INFO [2022-03-17 18:34:06.580][biodb::testContext] ********************************************************************************
biodb.INFO [2022-03-17 18:34:06.580][biodb::testContext] Test context - Generic tests
biodb.INFO [2022-03-17 18:34:06.580][biodb::testContext] ********************************************************************************
biodb.INFO [2022-03-17 18:34:06.580][biodb::testContext]
biodb.INFO [2022-03-17 18:34:06.611][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.3.2.
biodb.DEBUG[2022-03-17 18:34:06.611][self$loadDefinitions] Load definitions from file "D:/biocbuild/bbs-3.15-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-03-17 18:34:06.611][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-03-17 18:34:06.611][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-03-17 18:34:06.611][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-03-17 18:34:06.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:06.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.627][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-03-17 18:34:06.642][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-03-17 18:34:06.642][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:06.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.642][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-03-17 18:34:06.642][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-03-17 18:34:06.642][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:06.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.642][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-03-17 18:34:06.642][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-03-17 18:34:06.642][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-03-17 18:34:06.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:06.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.658][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-03-17 18:34:06.658][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-03-17 18:34:06.658][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-03-17 18:34:06.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:06.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.674][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-03-17 18:34:06.674][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-03-17 18:34:06.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:06.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.674][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-03-17 18:34:06.674][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-03-17 18:34:06.674][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-03-17 18:34:06.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:06.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.674][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-03-17 18:34:06.674][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-03-17 18:34:06.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:06.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.674][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-03-17 18:34:06.689][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-03-17 18:34:06.689][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-03-17 18:34:06.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:06.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.689][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-03-17 18:34:06.689][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-03-17 18:34:06.689][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-03-17 18:34:06.689][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-03-17 18:34:06.689][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-03-17 18:34:06.689][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-03-17 18:34:06.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:06.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.689][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-03-17 18:34:06.689][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-03-17 18:34:06.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:06.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.705][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-03-17 18:34:06.705][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-03-17 18:34:06.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:06.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.705][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-03-17 18:34:06.705][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-03-17 18:34:06.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:06.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.705][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-03-17 18:34:06.705][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-03-17 18:34:06.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:06.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.705][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-03-17 18:34:06.705][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-03-17 18:34:06.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:06.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.721][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-03-17 18:34:06.721][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-03-17 18:34:06.721][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-03-17 18:34:06.721][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:06.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.721][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-03-17 18:34:06.721][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-03-17 18:34:06.721][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-03-17 18:34:06.721][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:06.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.721][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-03-17 18:34:06.752][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:06.767][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-03-17 18:34:06.767][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:06.767][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:34:06.767][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:06.767][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-03-17 18:34:06.767][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:06.767][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-03-17 18:34:06.767][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-03-17 18:34:06.767][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:34:06.767][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:06.767][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-03-17 18:34:06.767][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:34:06.767][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:06.767][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:06.767][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-03-17 18:34:06.767][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-03-17 18:34:06.767][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-03-17 18:34:06.767][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-03-17 18:34:06.767][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-03-17 18:34:06.767][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-03-17 18:34:06.767][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:06.783][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:06.783][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:34:06.783][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:06.783][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:06.783][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:34:06.783][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:06.783][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:34:06.783][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:34:06.783][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:06.783][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:06.783][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-03-17 18:34:06.783][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:06.783][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-03-17 18:34:06.783][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:06.783][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:34:06.783][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:06.783][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-03-17 18:34:06.799][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:06.799][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-03-17 18:34:06.799][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-03-17 18:34:06.799][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:34:06.799][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:06.799][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-03-17 18:34:06.799][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:34:06.799][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:06.799][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:06.799][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-03-17 18:34:06.799][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-03-17 18:34:06.799][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-03-17 18:34:06.799][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-03-17 18:34:06.799][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-03-17 18:34:06.799][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-03-17 18:34:06.799][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:06.799][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:06.799][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:34:06.799][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:06.799][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:06.799][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:34:06.799][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:06.799][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:34:06.814][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:34:06.814][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:06.814][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:06.814][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-03-17 18:34:06.814][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:06.814][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-03-17 18:34:06.814][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:06.814][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:34:06.814][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:06.814][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-03-17 18:34:06.814][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:06.814][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-03-17 18:34:06.814][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-03-17 18:34:06.814][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:34:06.814][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:06.814][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-03-17 18:34:06.830][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:34:06.830][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:06.830][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:06.830][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:06.830][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-03-17 18:34:06.830][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:06.830][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:06.830][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:34:06.830][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:06.830][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:06.830][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:34:06.830][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:06.830][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:34:06.830][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:34:06.830][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:06.846][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:06.846][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-03-17 18:34:06.846][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:06.846][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-03-17 18:34:06.846][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:06.846][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:34:06.846][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:06.846][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-03-17 18:34:06.846][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:06.846][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-03-17 18:34:06.846][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-03-17 18:34:06.846][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:34:06.846][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:06.846][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-03-17 18:34:06.846][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:34:06.846][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:06.846][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:06.861][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:06.861][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-03-17 18:34:06.861][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:06.861][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:06.861][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:34:06.861][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:06.861][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:06.861][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:34:06.861][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:06.861][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:34:06.861][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:34:06.861][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:06.861][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:06.861][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-03-17 18:34:06.861][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.861][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:06.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:06.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:06.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.877][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:06.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:06.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:06.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.877][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:06.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:06.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:06.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.877][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:06.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:06.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:06.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.877][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:06.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:06.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:06.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.892][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:06.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:06.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:06.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.892][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:06.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:06.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:06.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.892][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:06.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:06.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:06.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.892][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:06.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:06.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:06.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.908][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:06.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:06.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:06.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.908][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:06.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:06.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:06.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.908][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:06.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:06.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:06.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.908][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:06.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:06.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:06.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.924][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:06.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:06.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:06.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.924][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:06.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:06.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:06.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.924][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:06.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:06.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:06.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.924][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:06.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:06.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:06.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:06.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:06.939][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-03-17 18:34:06.939][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-03-17 18:34:06.939][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-03-17 18:34:06.939][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-03-17 18:34:06.939][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-03-17 18:34:06.939][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-03-17 18:34:06.939][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-03-17 18:34:06.939][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-03-17 18:34:06.939][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-03-17 18:34:06.955][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-03-17 18:34:06.955][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-03-17 18:34:06.955][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-03-17 18:34:06.955][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-03-17 18:34:06.955][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-03-17 18:34:06.955][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-03-17 18:34:06.955][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-03-17 18:34:06.955][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-03-17 18:34:06.955][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-03-17 18:34:06.955][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-03-17 18:34:06.955][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-03-17 18:34:06.971][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-03-17 18:34:06.971][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-03-17 18:34:06.971][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-03-17 18:34:06.971][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-03-17 18:34:06.971][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-03-17 18:34:06.971][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-03-17 18:34:06.971][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-03-17 18:34:06.971][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-03-17 18:34:06.971][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-03-17 18:34:06.971][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-03-17 18:34:06.971][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-03-17 18:34:06.971][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-03-17 18:34:06.971][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-03-17 18:34:06.986][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-03-17 18:34:06.986][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-03-17 18:34:06.986][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-03-17 18:34:06.986][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-03-17 18:34:06.986][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-03-17 18:34:06.986][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-03-17 18:34:06.986][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-03-17 18:34:06.986][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-03-17 18:34:06.986][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-03-17 18:34:06.986][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-03-17 18:34:06.986][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-03-17 18:34:06.986][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-03-17 18:34:06.986][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-03-17 18:34:07.002][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-03-17 18:34:07.002][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-03-17 18:34:07.002][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-03-17 18:34:07.002][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-03-17 18:34:07.002][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-03-17 18:34:07.002][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-03-17 18:34:07.002][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-03-17 18:34:07.002][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-03-17 18:34:07.002][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-03-17 18:34:07.002][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-03-17 18:34:07.017][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-03-17 18:34:07.017][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-03-17 18:34:07.017][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-03-17 18:34:07.017][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-03-17 18:34:07.017][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-03-17 18:34:07.017][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-03-17 18:34:07.017][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-03-17 18:34:07.017][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-03-17 18:34:07.017][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-03-17 18:34:07.017][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-03-17 18:34:07.017][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-03-17 18:34:07.017][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-03-17 18:34:07.017][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-03-17 18:34:07.033][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-03-17 18:34:07.033][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-03-17 18:34:07.033][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-03-17 18:34:07.033][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-03-17 18:34:07.033][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-03-17 18:34:07.033][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-03-17 18:34:07.033][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-03-17 18:34:07.033][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-03-17 18:34:07.033][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-03-17 18:34:07.033][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-03-17 18:34:07.033][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-03-17 18:34:07.033][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-03-17 18:34:07.033][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-03-17 18:34:07.049][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-03-17 18:34:07.049][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-03-17 18:34:07.049][initialize] This is biodb version 1.3.2.
biodb.DEBUG[2022-03-17 18:34:07.049][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-03-17 18:34:07.049][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:07.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:07.064][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:07.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:07.064][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:07.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:07.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:07.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:07.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:07.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:07.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:07.064][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:07.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:07.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:07.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:07.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:07.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:07.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:07.064][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:07.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:07.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:07.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:07.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:07.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:07.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:07.080][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:07.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:07.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:07.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:07.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:07.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:07.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:07.080][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:07.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:07.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:07.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:07.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:07.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:07.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:07.080][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:07.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:07.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:07.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:07.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:07.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:07.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:07.096][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:07.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:07.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:07.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:07.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:07.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:07.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:07.096][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:07.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:07.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:07.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:07.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:07.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:07.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:07.111][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:07.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:07.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:07.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:07.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:07.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:07.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:07.111][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:07.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:07.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:07.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:07.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:07.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:07.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:07.111][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:07.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:07.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:07.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:07.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:07.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:07.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:07.127][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:07.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:07.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:07.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:07.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:07.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:07.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:07.127][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:07.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:07.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:07.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:07.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:07.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:07.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:07.127][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:07.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:07.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:07.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:07.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:07.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:07.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:07.142][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:07.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:07.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:07.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:07.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:07.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:07.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:07.142][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:07.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:07.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:07.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:07.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:07.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:07.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:07.142][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:07.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:07.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:07.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:07.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:07.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:07.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:07.158][biodb$loadDefinitions] Load definitions from file "D:/biocbuild/bbs-3.15-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2022-03-17 18:34:07.158][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2022-03-17 18:34:07.158][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:07.174][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-03-17 18:34:07.174][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:07.174][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:34:07.174][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:07.174][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-03-17 18:34:07.174][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:07.174][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2022-03-17 18:34:07.174][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-03-17 18:34:07.174][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:34:07.174][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:07.174][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2022-03-17 18:34:07.174][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:34:07.174][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2022-03-17 18:34:07.174][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2022-03-17 18:34:07.174][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2022-03-17 18:34:07.174][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2022-03-17 18:34:07.174][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2022-03-17 18:34:07.174][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2022-03-17 18:34:07.174][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2022-03-17 18:34:07.174][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2022-03-17 18:34:07.174][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2022-03-17 18:34:07.174][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2022-03-17 18:34:07.174][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2022-03-17 18:34:07.174][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:07.174][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-03-17 18:34:07.174][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-03-17 18:34:07.174][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-03-17 18:34:07.174][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-03-17 18:34:07.174][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:07.174][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:07.189][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:34:07.189][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:07.189][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:07.189][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:34:07.189][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-03-17 18:34:07.189][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2022-03-17 18:34:07.189][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:34:07.189][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:34:07.189][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:07.189][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2022-03-17 18:34:07.189][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2022-03-17 18:34:07.189][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-03-17 18:34:07.189][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-03-17 18:34:07.189][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2022-03-17 18:34:07.189][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-03-17 18:34:07.205][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-03-17 18:34:07.205][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-03-17 18:34:07.221][super$initialize] Initialize connector chebi.
biodb.DEBUG[2022-03-17 18:34:07.221][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2022-03-17 18:34:07.221][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2022-03-17 18:34:07.236][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2022-03-17 18:34:07.236][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-03-17 18:34:07.236][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-03-17 18:34:07.236][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2022-03-17 18:34:07.236][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2022-03-17 18:34:07.267][biodb::testThat]
biodb.INFO [2022-03-17 18:34:07.267][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2022-03-17 18:34:07.267][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:07.267][biodb::testThat]
biodb.TRACE[2022-03-17 18:34:07.267][loadFileContents] Loaded 1 files from cache: [1]: "D:/biocbuild/bbs-3.15-bioc/R/library/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2022-03-17 18:34:07.283][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-03-17 18:34:07.283][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-03-17 18:34:07.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:07.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:07.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:07.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:07.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:07.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:07.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:07.314][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:07.314][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:07.314][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.314][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:07.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:07.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.346][ef$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:07.346][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:07.346][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.346][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.377][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:07.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:07.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.392][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:07.392][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:07.392][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.392][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.392][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:07.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:07.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.408][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:07.408][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:07.408][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.408][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.408][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:07.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:07.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.424][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:07.424][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:07.424][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.424][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.424][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:07.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:07.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.439][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:07.439][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:07.439][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.439][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.439][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:07.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:07.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.455][ef$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:07.455][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:07.455][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.455][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.455][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:07.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:07.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.471][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:07.471][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:07.471][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.471][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:07.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:07.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.486][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:07.486][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:07.486][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.486][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.486][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:07.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:07.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.502][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:07.502][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:07.502][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.502][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.502][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:07.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:07.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.517][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:07.517][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:07.517][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.517][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.517][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:07.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:07.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:07.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:07.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:07.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:07.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:07.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:07.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:07.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:07.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:07.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:07.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:07.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:07.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:07.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:07.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:07.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:07.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:07.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:07.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:07.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:07.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:07.596][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2022-03-17 18:34:07.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:07.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:07.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:07.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:07.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:07.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:07.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:07.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:07.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:07.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:07.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:07.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:07.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.674][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-03-17 18:34:07.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-03-17 18:34:07.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.674][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-03-17 18:34:07.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-03-17 18:34:07.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.689][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-03-17 18:34:07.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-03-17 18:34:07.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.689][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-03-17 18:34:07.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-03-17 18:34:07.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:07.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:07.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:07.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:07.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:07.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:07.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:07.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:07.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:07.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:07.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:07.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:07.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:07.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:07.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:07.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:07.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:07.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:07.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:07.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:07.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:07.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:07.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:07.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:07.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:07.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:07.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:07.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:07.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.767][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:07.767][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:07.767][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.783][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:07.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:07.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:07.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:07.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:07.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:07.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:07.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:07.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.799][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:07.799][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:07.799][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.799][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:07.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:07.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.814][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:07.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:07.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.814][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:07.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:07.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.814][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:07.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:07.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.830][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:07.830][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:07.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.830][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.830][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:07.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:07.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.830][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:07.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:07.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.846][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:07.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:07.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.846][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:07.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:07.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.846][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:07.846][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:07.846][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.846][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.846][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:07.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:07.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:07.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:07.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:07.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:07.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:07.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:07.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.877][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:07.877][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:07.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.877][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:07.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:07.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:07.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:07.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:07.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:07.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:07.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:07.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.892][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:07.892][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:07.892][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.892][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:07.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:07.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.908][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:07.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:07.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.908][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:07.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:07.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.908][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:07.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:07.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.924][ef$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:07.924][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:07.924][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.924][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.924][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:07.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:07.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.939][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-03-17 18:34:07.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:07.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.939][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-03-17 18:34:07.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:07.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.939][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-03-17 18:34:07.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:07.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.939][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-03-17 18:34:07.939][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:07.939][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.939][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.955][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-03-17 18:34:07.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:07.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.955][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:07.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:07.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.955][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:07.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:07.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.971][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:07.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:07.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.971][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:07.971][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:07.971][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.971][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.971][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:07.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:07.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.986][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:07.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:07.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.986][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:07.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:07.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.986][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:07.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:07.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:07.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:07.986][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:08.002][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:08.002][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.002][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.002][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:08.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:08.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.002][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:08.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:08.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.017][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:08.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:08.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.017][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:08.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:08.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.017][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:08.017][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:08.017][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.017][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.017][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:08.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:08.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.033][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:08.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:08.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.033][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:08.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:08.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:08.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:08.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.049][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:08.049][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:08.049][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.049][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:08.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:08.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.064][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:08.064][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:08.064][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.064][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.064][ef$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:08.064][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:08.064][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.064][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.080][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:08.080][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:08.080][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.080][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.080][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:08.080][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:08.080][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.080][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.096][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:08.096][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:08.096][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.096][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.096][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:08.096][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:08.096][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.096][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.111][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:08.111][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:08.111][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.111][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.111][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:08.111][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:08.111][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.111][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.111][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-03-17 18:34:08.127][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:08.127][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.127][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.127][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:08.127][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:08.127][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.127][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.127][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:08.127][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:08.127][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.142][ef$get] fields variable is a list.
biodb.INFO [2022-03-17 18:34:08.142][biodb::testThat]
biodb.INFO [2022-03-17 18:34:08.142][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2022-03-17 18:34:08.142][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:08.142][biodb::testThat]
biodb.DEBUG[2022-03-17 18:34:08.158][private$loadEntries] Creating entries from ids [1]: "15440".
biodb.DEBUG[2022-03-17 18:34:08.158][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-03-17 18:34:08.158][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15440".
biodb.TRACE[2022-03-17 18:34:08.158][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:34:08.158][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml".
biodb.DEBUG[2022-03-17 18:34:08.174][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-03-17 18:34:08.205][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-03-17 18:34:08.205][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-03-17 18:34:08.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:08.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:08.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:08.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:08.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:08.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:08.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:08.221][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:08.221][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:08.221][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.221][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:08.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:08.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.252][ef$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:08.252][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:08.252][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.252][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.252][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:08.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:08.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.267][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:08.267][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:08.267][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.267][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.267][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:08.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:08.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.283][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:08.283][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:08.283][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.283][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.283][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:08.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:08.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.299][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:08.299][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:08.299][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.299][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.299][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:08.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:08.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.314][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:08.314][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:08.314][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.314][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.314][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:08.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:08.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.330][ef$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:08.330][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:08.330][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.330][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.330][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:08.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:08.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.346][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:08.346][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:08.346][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.346][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:08.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:08.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.361][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:08.361][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:08.361][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.361][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.361][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:08.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:08.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.377][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:08.377][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:08.377][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.377][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.377][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:08.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:08.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.392][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:08.392][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:08.392][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.392][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.392][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:08.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:08.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:08.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:08.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:08.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:08.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:08.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:08.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:08.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:08.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:08.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:08.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:08.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:08.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:08.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:08.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:08.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:08.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:08.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:08.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:08.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:08.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:08.455][self$createEntryFromContent] Accession numbers: 15440.
biodb.TRACE[2022-03-17 18:34:08.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-03-17 18:34:08.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-03-17 18:34:08.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-03-17 18:34:08.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-03-17 18:34:08.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-03-17 18:34:08.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-03-17 18:34:08.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-03-17 18:34:08.471][biodb::testThat]
biodb.INFO [2022-03-17 18:34:08.471][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2022-03-17 18:34:08.471][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:08.471][biodb::testThat]
biodb.TRACE[2022-03-17 18:34:08.471][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:08.471][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:08.471][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.471][ef$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:08.471][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2022-03-17 18:34:08.502][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:08.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:08.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.502][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:08.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:08.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:08.502][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:08.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:08.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:08.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:08.517][function(conn, opt)] With value "squalene".
biodb.DEBUG[2022-03-17 18:34:08.533][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2022-03-17 18:34:08.549][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-03-17 18:34:08.564][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2022-03-17 18:34:08.564][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:34:08.564][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2022-03-17 18:34:08.580][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:08.596][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:34:08.596][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:34:08.596][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL%20NAMES&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-03-17 18:34:11.017][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL%20NAMES&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-03-17 18:34:11.689][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:34:11.705][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content"
biodb.TRACE[2022-03-17 18:34:11.752][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.request"
biodb.DEBUG[2022-03-17 18:34:11.767][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2022-03-17 18:34:11.783][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:11.783][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:11.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:11.783][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:11.783][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:11.783][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:11.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:11.783][ef$get] fields variable is a list.
biodb.INFO [2022-03-17 18:34:11.783][biodb::testThat]
biodb.INFO [2022-03-17 18:34:11.783][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2022-03-17 18:34:11.783][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:11.783][biodb::testThat]
biodb.TRACE[2022-03-17 18:34:11.814][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:11.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:11.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:11.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:11.814][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:11.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:11.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:11.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:11.830][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:11.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:11.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:11.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:11.877][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:11.892][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-03-17 18:34:11.892][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-03-17 18:34:11.892][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:34:11.892][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2022-03-17 18:34:11.908][biodb::testThat]
biodb.INFO [2022-03-17 18:34:11.908][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2022-03-17 18:34:11.908][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:11.908][biodb::testThat]
biodb.TRACE[2022-03-17 18:34:11.939][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:11.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:11.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:11.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:11.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:11.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:11.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:11.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:11.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:11.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:11.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:11.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:11.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:11.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:11.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:11.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:11.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:11.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:11.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:11.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:11.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:11.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:11.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:11.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:11.971][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-03-17 18:34:11.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-03-17 18:34:11.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:11.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:11.971][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-03-17 18:34:11.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-03-17 18:34:11.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:11.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:11.971][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-03-17 18:34:11.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-03-17 18:34:11.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:11.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:11.971][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-03-17 18:34:11.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-03-17 18:34:11.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:11.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:12.033][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:12.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:12.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:12.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:12.033][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:12.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:12.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:12.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:12.033][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:12.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:12.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:12.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:12.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:12.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:12.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:12.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:12.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:12.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:12.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:12.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:12.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:12.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:12.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:12.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:12.049][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-03-17 18:34:12.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-03-17 18:34:12.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:12.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:12.064][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-03-17 18:34:12.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-03-17 18:34:12.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:12.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:12.064][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-03-17 18:34:12.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-03-17 18:34:12.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:12.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:12.064][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-03-17 18:34:12.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-03-17 18:34:12.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:12.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-03-17 18:34:12.080][biodb::testThat]
biodb.INFO [2022-03-17 18:34:12.080][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2022-03-17 18:34:12.080][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:12.080][biodb::testThat]
biodb.INFO [2022-03-17 18:34:12.080][biodb::testThat]
biodb.INFO [2022-03-17 18:34:12.080][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2022-03-17 18:34:12.080][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:12.080][biodb::testThat]
biodb.INFO [2022-03-17 18:34:12.096][biodb::testThat]
biodb.INFO [2022-03-17 18:34:12.096][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2022-03-17 18:34:12.096][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:12.096][biodb::testThat]
biodb.DEBUG[2022-03-17 18:34:12.096][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2022-03-17 18:34:12.814][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2022-03-17 18:34:13.955][biodb::testThat]
biodb.INFO [2022-03-17 18:34:13.955][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2022-03-17 18:34:13.955][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:13.955][biodb::testThat]
biodb.DEBUG[2022-03-17 18:34:14.486][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2022-03-17 18:34:15.158][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:15.158][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:15.158][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:15.158][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:15.174][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:15.174][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:15.174][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:15.174][ef$get] fields variable is a list.
biodb.INFO [2022-03-17 18:34:15.174][biodb::testThat]
biodb.INFO [2022-03-17 18:34:15.174][biodb::testThat] Running test function test.searchCompound (" We can search for a compound ").
biodb.INFO [2022-03-17 18:34:15.174][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:15.174][biodb::testThat]
biodb.TRACE[2022-03-17 18:34:15.205][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:15.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:15.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:15.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:15.205][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:15.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:15.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:15.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:15.205][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:15.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:15.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:15.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:15.267][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:15.267][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-03-17 18:34:15.283][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-03-17 18:34:15.283][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:34:15.283][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-03-17 18:34:15.299][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:15.314][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-03-17 18:34:15.314][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-03-17 18:34:15.314][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:34:15.314][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2022-03-17 18:34:15.330][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:15.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:15.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:15.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:15.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:15.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:15.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:15.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:15.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:15.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:15.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:15.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:15.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:15.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:15.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:15.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:15.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:15.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:15.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:15.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:15.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:15.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:15.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:15.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:15.408][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:15.408][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:34:15.408][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:34:15.424][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-03-17 18:34:15.892][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-03-17 18:34:16.424][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:34:16.424][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content"
biodb.TRACE[2022-03-17 18:34:16.439][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.request"
biodb.DEBUG[2022-03-17 18:34:16.455][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:16.455][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:34:16.455][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:34:16.455][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-03-17 18:34:16.955][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-03-17 18:34:17.455][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:34:17.471][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content"
biodb.TRACE[2022-03-17 18:34:17.486][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.request"
biodb.DEBUG[2022-03-17 18:34:17.517][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:17.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:17.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:17.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:17.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:17.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:17.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:17.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:17.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:17.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:17.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:17.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:17.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:17.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:17.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:17.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:17.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:17.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:17.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:17.549][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:17.549][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:34:17.549][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:34:17.549][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-03-17 18:34:18.205][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-03-17 18:34:18.736][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:34:18.736][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content"
biodb.TRACE[2022-03-17 18:34:18.752][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.request"
biodb.DEBUG[2022-03-17 18:34:18.799][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:18.799][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-03-17 18:34:18.799][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-03-17 18:34:18.814][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:34:18.814][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-03-17 18:34:18.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:18.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:18.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:18.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:18.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:18.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:18.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:18.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:18.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:18.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:18.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:18.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:18.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:18.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:18.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:18.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:18.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:18.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:18.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:18.861][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:18.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:18.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:18.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:18.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:18.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:18.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:18.861][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2022-03-17 18:34:18.892][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-03-17 18:34:18.908][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2022-03-17 18:34:18.908][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-03-17 18:34:18.908][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-03-17 18:34:18.908][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-03-17 18:34:18.908][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-03-17 18:34:18.908][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-03-17 18:34:18.908][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-03-17 18:34:18.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:18.908][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:18.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:18.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:18.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:18.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:18.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:18.924][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.DEBUG[2022-03-17 18:34:18.924][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:34:18.924][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:34:18.924][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.TRACE[2022-03-17 18:34:19.424][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747).
biodb.DEBUG[2022-03-17 18:34:20.002][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:34:20.002][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.content"
biodb.TRACE[2022-03-17 18:34:20.017][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.request"
biodb.TRACE[2022-03-17 18:34:20.049][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml"
biodb.DEBUG[2022-03-17 18:34:20.064][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-03-17 18:34:20.080][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-03-17 18:34:20.080][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-03-17 18:34:20.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:20.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:20.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:20.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:20.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:20.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:20.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:20.096][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:20.096][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:20.096][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.096][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:20.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:20.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.096][ef$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:20.096][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:20.096][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.096][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.111][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:20.111][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:20.111][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.111][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.111][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:20.111][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:20.111][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.111][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.111][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:20.111][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:20.111][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.111][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.111][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:20.111][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:20.111][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.111][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.111][ef$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:20.127][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:20.127][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.127][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.127][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:20.127][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:20.127][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.127][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.127][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:20.127][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:20.127][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.127][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.127][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:20.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:20.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.142][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:20.142][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:20.142][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.142][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.142][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:20.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:20.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.142][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:20.142][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:20.142][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.158][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:20.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:20.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:20.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:20.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:20.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:20.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:20.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:20.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:20.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:20.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:20.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:20.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:20.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:20.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:20.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:20.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:20.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:20.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:20.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:20.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:20.189][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2022-03-17 18:34:20.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:20.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:20.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:20.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:20.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:20.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:20.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:20.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:20.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:20.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:20.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:20.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:20.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:20.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:20.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:20.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:20.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:20.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:20.236][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2022-03-17 18:34:20.236][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-03-17 18:34:20.236][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2022-03-17 18:34:20.236][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-03-17 18:34:20.236][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-03-17 18:34:20.236][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-03-17 18:34:20.236][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-03-17 18:34:20.236][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-03-17 18:34:20.236][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-03-17 18:34:20.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:20.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:20.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:20.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:20.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:20.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:20.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:20.252][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.DEBUG[2022-03-17 18:34:20.252][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:34:20.267][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:34:20.267][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.TRACE[2022-03-17 18:34:20.736][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285).
biodb.DEBUG[2022-03-17 18:34:21.267][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:34:21.283][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.content"
biodb.TRACE[2022-03-17 18:34:21.299][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.request"
biodb.TRACE[2022-03-17 18:34:21.330][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml"
biodb.DEBUG[2022-03-17 18:34:21.330][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-03-17 18:34:21.361][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-03-17 18:34:21.361][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-03-17 18:34:21.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:21.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:21.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:21.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:21.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:21.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:21.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:21.392][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:21.392][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:21.392][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.392][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:21.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:21.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.392][ef$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:21.408][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:21.408][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.408][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.408][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:21.408][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:21.408][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.408][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.408][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:21.408][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:21.408][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.408][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.408][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:21.408][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:21.408][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.408][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.408][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:21.424][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:21.424][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.424][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.424][ef$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:21.424][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:21.424][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.424][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.424][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:21.424][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:21.424][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.424][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.424][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:21.424][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:21.424][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.424][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.424][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:21.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:21.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.439][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:21.439][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:21.439][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.439][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.439][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:21.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:21.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.455][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:21.455][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:21.455][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.455][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:21.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:21.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:21.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:21.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:21.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:21.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:21.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:21.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:21.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:21.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:21.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:21.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:21.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:21.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:21.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:21.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:21.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:21.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:21.502][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:21.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:21.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:21.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:21.517][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:21.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:21.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:21.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:21.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:21.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:21.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:21.517][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2022-03-17 18:34:21.533][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-03-17 18:34:21.533][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2022-03-17 18:34:21.533][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-03-17 18:34:21.533][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-03-17 18:34:21.533][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-03-17 18:34:21.533][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-03-17 18:34:21.533][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-03-17 18:34:21.533][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-03-17 18:34:21.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:21.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:21.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:21.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:21.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:21.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:21.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:21.549][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.DEBUG[2022-03-17 18:34:21.549][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:34:21.549][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:34:21.549][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.TRACE[2022-03-17 18:34:22.033][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174).
biodb.DEBUG[2022-03-17 18:34:22.549][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:34:22.564][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.content"
biodb.TRACE[2022-03-17 18:34:22.580][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.request"
biodb.TRACE[2022-03-17 18:34:22.596][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml"
biodb.DEBUG[2022-03-17 18:34:22.596][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-03-17 18:34:22.611][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-03-17 18:34:22.611][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-03-17 18:34:22.611][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:22.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:22.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:22.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:22.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:22.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:22.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:22.627][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:22.627][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:22.627][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.627][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:22.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:22.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.642][ef$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:22.642][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:22.642][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.642][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.642][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:22.642][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:22.642][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.642][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.642][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:22.642][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:22.642][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.642][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.642][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:22.642][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:22.642][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.658][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.658][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:22.658][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:22.658][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.658][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.658][ef$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:22.658][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:22.658][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.658][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.658][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:22.658][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:22.658][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.658][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.658][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:22.658][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:22.674][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.674][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.674][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:22.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:22.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.674][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:22.674][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:22.674][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.674][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.689][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:22.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:22.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.689][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:22.689][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:22.689][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.689][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:22.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:22.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:22.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:22.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:22.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:22.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:22.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:22.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:22.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:22.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:22.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:22.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:22.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:22.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:22.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:22.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:22.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:22.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:22.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:22.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:22.736][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2022-03-17 18:34:22.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:22.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:22.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:22.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:22.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:22.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:22.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:22.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:22.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:22.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:22.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:22.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:22.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:22.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:22.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:22.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:22.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:22.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:22.767][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2022-03-17 18:34:22.767][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-03-17 18:34:22.767][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2022-03-17 18:34:22.767][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-03-17 18:34:22.767][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-03-17 18:34:22.767][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-03-17 18:34:22.767][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-03-17 18:34:22.767][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-03-17 18:34:22.767][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-03-17 18:34:22.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:22.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:22.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:22.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:22.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:22.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:22.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:22.799][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.DEBUG[2022-03-17 18:34:22.799][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:34:22.799][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:34:22.799][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.TRACE[2022-03-17 18:34:23.861][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441).
biodb.DEBUG[2022-03-17 18:34:24.361][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:34:24.361][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.content"
biodb.TRACE[2022-03-17 18:34:24.377][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.request"
biodb.TRACE[2022-03-17 18:34:24.392][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml"
biodb.DEBUG[2022-03-17 18:34:24.392][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-03-17 18:34:24.424][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-03-17 18:34:24.424][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-03-17 18:34:24.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:24.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:24.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:24.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:24.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:24.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:24.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:24.439][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:24.439][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:24.439][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.439][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:24.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:24.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:24.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:24.439][ef$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:24.439][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:24.439][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.455][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:24.455][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:24.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:24.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:24.455][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:24.455][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:24.455][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.455][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:24.455][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:24.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:24.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:24.471][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:24.471][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:24.471][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.471][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:24.471][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:24.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:24.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:24.471][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:24.486][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:24.486][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.486][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:24.486][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:24.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:24.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:24.486][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:24.486][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:24.486][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.486][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:24.486][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:24.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:24.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:24.502][ef$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:24.502][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:24.502][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.502][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:24.502][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:24.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:24.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:24.517][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:24.517][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:24.517][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.517][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:24.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:24.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:24.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:24.517][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:24.533][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:24.533][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.533][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:24.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:24.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:24.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:24.533][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:24.533][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:24.533][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.533][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:24.533][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:24.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:24.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:24.549][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:24.549][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:24.549][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.549][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:24.549][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:24.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:24.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:24.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:24.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:24.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:24.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:24.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:24.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:24.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:24.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:24.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:24.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:24.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:24.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:24.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:24.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:24.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:24.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:24.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:24.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:24.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:24.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:24.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:24.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:24.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:24.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:24.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:24.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:24.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:24.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:24.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:24.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:24.596][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2022-03-17 18:34:24.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:24.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:24.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:24.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:24.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:24.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:24.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:24.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:24.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:24.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:24.611][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:24.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:24.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:24.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:24.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:24.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:24.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:24.611][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2022-03-17 18:34:24.611][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-03-17 18:34:24.627][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2022-03-17 18:34:24.627][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-03-17 18:34:24.627][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-03-17 18:34:24.627][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-03-17 18:34:24.627][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-03-17 18:34:24.627][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-03-17 18:34:24.627][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-03-17 18:34:24.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:24.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:24.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:24.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:24.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:24.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:24.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:24.642][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.DEBUG[2022-03-17 18:34:24.642][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:34:24.642][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:34:24.642][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.TRACE[2022-03-17 18:34:25.127][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442).
biodb.DEBUG[2022-03-17 18:34:25.596][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:34:25.611][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.content"
biodb.TRACE[2022-03-17 18:34:25.627][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.request"
biodb.TRACE[2022-03-17 18:34:25.627][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml"
biodb.DEBUG[2022-03-17 18:34:25.642][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-03-17 18:34:25.658][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-03-17 18:34:25.658][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-03-17 18:34:25.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:25.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:25.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:25.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:25.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:25.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:25.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:25.674][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:25.674][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:25.674][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.674][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:25.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:25.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:25.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:25.689][ef$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:25.689][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:25.689][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.689][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:25.689][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:25.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:25.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:25.689][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:25.689][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:25.705][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.705][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:25.705][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:25.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:25.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:25.705][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:25.705][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:25.705][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.705][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:25.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:25.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:25.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:25.721][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:25.721][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:25.721][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.721][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:25.721][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:25.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:25.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:25.721][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:25.736][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:25.736][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.736][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:25.736][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:25.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:25.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:25.736][ef$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:25.736][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:25.736][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.736][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:25.736][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:25.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:25.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:25.752][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:25.752][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:25.752][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.752][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:25.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:25.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:25.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:25.767][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:25.767][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:25.767][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.767][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:25.767][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:25.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:25.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:25.783][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:25.783][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:25.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.783][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:25.783][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:25.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:25.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:25.783][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:25.783][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:25.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.783][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:25.783][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:25.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:25.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:25.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:25.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:25.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:25.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:25.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:25.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:25.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:25.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:25.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:25.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:25.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:25.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:25.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:25.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:25.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:25.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:25.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:25.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:25.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:25.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:25.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:25.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:25.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:25.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:25.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:25.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:25.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:25.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:25.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:25.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:25.830][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2022-03-17 18:34:25.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:25.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:25.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:25.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:25.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:25.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:25.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:25.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:25.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:25.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:25.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:25.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:25.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:25.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:25.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:25.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:25.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:25.861][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2022-03-17 18:34:25.861][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-03-17 18:34:25.861][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2022-03-17 18:34:25.861][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-03-17 18:34:25.861][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-03-17 18:34:25.861][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-03-17 18:34:25.861][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-03-17 18:34:25.861][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-03-17 18:34:25.861][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-03-17 18:34:25.861][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:25.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:25.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:25.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:25.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:25.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:25.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:25.877][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.DEBUG[2022-03-17 18:34:25.877][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:34:25.877][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:34:25.877][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.TRACE[2022-03-17 18:34:26.346][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310).
biodb.DEBUG[2022-03-17 18:34:26.846][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:34:26.846][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.content"
biodb.TRACE[2022-03-17 18:34:26.861][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.request"
biodb.TRACE[2022-03-17 18:34:26.877][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml"
biodb.DEBUG[2022-03-17 18:34:26.877][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-03-17 18:34:26.908][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-03-17 18:34:26.908][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-03-17 18:34:26.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:26.908][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:26.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:26.908][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:26.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:26.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:26.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:26.908][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:26.908][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:26.924][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:26.924][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:26.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:26.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:26.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:26.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:26.924][ef$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:26.924][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:26.924][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:26.924][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:26.924][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:26.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:26.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:26.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:26.939][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:26.939][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:26.939][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:26.939][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:26.939][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:26.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:26.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:26.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:26.955][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:26.955][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:26.955][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:26.955][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:26.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:26.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:26.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:26.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:26.955][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:26.955][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:26.955][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:26.955][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:26.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:26.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:26.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:26.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:26.971][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:26.971][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:26.971][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:26.971][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:26.971][ef$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:26.971][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:26.971][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:26.971][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:26.971][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:26.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:26.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:26.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:26.986][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:26.986][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:26.986][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:26.986][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:26.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:26.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:26.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:26.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:26.986][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:27.002][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:27.002][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.002][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.002][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:27.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:27.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.002][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:27.017][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:27.017][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.017][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.017][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:27.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:27.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.017][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:27.017][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:27.017][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.017][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.017][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:27.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:27.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:27.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:27.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:27.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:27.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:27.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:27.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:27.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:27.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:27.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:27.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:27.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:27.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:27.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:27.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:27.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:27.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:27.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:27.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:27.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:27.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:27.064][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2022-03-17 18:34:27.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:27.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:27.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:27.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:27.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:27.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:27.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:27.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:27.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:27.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:27.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.096][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2022-03-17 18:34:27.096][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-03-17 18:34:27.096][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2022-03-17 18:34:27.096][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-03-17 18:34:27.096][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-03-17 18:34:27.096][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-03-17 18:34:27.096][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-03-17 18:34:27.096][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-03-17 18:34:27.096][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-03-17 18:34:27.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:27.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:27.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:27.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.111][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.DEBUG[2022-03-17 18:34:27.111][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:34:27.111][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:34:27.127][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.TRACE[2022-03-17 18:34:27.596][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216).
biodb.DEBUG[2022-03-17 18:34:28.080][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:34:28.096][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.content"
biodb.TRACE[2022-03-17 18:34:28.111][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.request"
biodb.TRACE[2022-03-17 18:34:28.142][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml"
biodb.DEBUG[2022-03-17 18:34:28.142][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-03-17 18:34:28.174][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-03-17 18:34:28.174][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-03-17 18:34:28.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:28.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:28.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:28.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:28.205][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:28.205][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:28.205][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.205][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:28.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:28.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.221][ef$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:28.221][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:28.221][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.221][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.221][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:28.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:28.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.236][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:28.236][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:28.236][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.236][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.236][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:28.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:28.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.252][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:28.252][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:28.252][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.252][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.252][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:28.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:28.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.267][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:28.267][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:28.267][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.267][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.267][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:28.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:28.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.283][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:28.283][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:28.283][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.283][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.283][ef$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:28.283][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:28.283][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.283][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.283][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:28.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:28.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.299][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:28.299][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:28.299][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.299][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:28.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:28.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.299][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:28.299][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:28.299][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.299][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.314][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:28.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:28.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.314][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:28.314][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:28.314][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.330][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.330][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:28.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:28.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.330][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:28.330][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:28.330][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.330][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.330][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:28.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:28.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:28.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:28.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:28.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:28.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:28.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:28.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:28.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:28.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:28.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:28.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:28.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:28.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:28.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:28.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:28.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:28.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:28.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:28.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:28.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:28.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:28.377][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2022-03-17 18:34:28.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:28.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:28.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:28.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:28.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:28.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:28.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:28.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:28.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:28.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:28.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.408][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2022-03-17 18:34:28.408][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-03-17 18:34:28.408][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2022-03-17 18:34:28.408][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-03-17 18:34:28.408][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-03-17 18:34:28.408][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-03-17 18:34:28.408][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-03-17 18:34:28.408][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-03-17 18:34:28.408][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-03-17 18:34:28.408][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:28.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:28.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:28.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.424][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.DEBUG[2022-03-17 18:34:28.424][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:34:28.424][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:34:28.424][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.TRACE[2022-03-17 18:34:28.908][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860).
biodb.DEBUG[2022-03-17 18:34:29.408][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:34:29.424][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.content"
biodb.TRACE[2022-03-17 18:34:29.439][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.request"
biodb.TRACE[2022-03-17 18:34:29.455][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml"
biodb.DEBUG[2022-03-17 18:34:29.455][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-03-17 18:34:29.486][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-03-17 18:34:29.486][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-03-17 18:34:29.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:29.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:29.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:29.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:29.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:29.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:29.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:29.502][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:29.502][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:29.502][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.502][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:29.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:29.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.517][ef$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:29.517][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:29.517][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.517][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.517][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:29.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:29.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.517][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:29.517][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:29.517][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.517][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.533][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:29.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:29.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.533][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:29.533][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:29.533][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.533][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:29.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:29.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.549][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:29.549][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:29.549][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.549][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:29.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:29.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.549][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:29.549][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:29.549][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.564][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.564][ef$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:29.564][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:29.564][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.564][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.564][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:29.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:29.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.564][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:29.564][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:29.564][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.564][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:29.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:29.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.580][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:29.580][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:29.580][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.580][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.596][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:29.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:29.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.596][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:29.596][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:29.596][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.596][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.596][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:29.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:29.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.611][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:29.611][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:29.611][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.611][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.611][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:29.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:29.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:29.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:29.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:29.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:29.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:29.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:29.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:29.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:29.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:29.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:29.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:29.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:29.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:29.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:29.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:29.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:29.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:29.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:29.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:29.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:29.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:29.658][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2022-03-17 18:34:29.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:29.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:29.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:29.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:29.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:29.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:29.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:29.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:29.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:29.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:29.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:29.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:29.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:29.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:29.674][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2022-03-17 18:34:29.674][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-03-17 18:34:29.689][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2022-03-17 18:34:29.689][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-03-17 18:34:29.689][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-03-17 18:34:29.689][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-03-17 18:34:29.689][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-03-17 18:34:29.689][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-03-17 18:34:29.689][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-03-17 18:34:29.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:29.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:29.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:29.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:29.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:29.705][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:29.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:29.705][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.DEBUG[2022-03-17 18:34:29.705][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:34:29.705][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:34:29.705][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.TRACE[2022-03-17 18:34:30.174][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861).
biodb.DEBUG[2022-03-17 18:34:30.674][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:34:30.689][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.content"
biodb.TRACE[2022-03-17 18:34:30.705][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.request"
biodb.TRACE[2022-03-17 18:34:30.721][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml"
biodb.DEBUG[2022-03-17 18:34:30.736][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-03-17 18:34:30.767][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-03-17 18:34:30.767][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-03-17 18:34:30.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:30.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:30.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:30.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:30.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:30.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:30.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:30.783][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:30.783][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:30.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.783][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:30.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:30.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.799][ef$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:30.799][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:30.799][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.799][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.799][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:30.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:30.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.814][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:30.814][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:30.814][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.814][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.814][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:30.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:30.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.830][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:30.830][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:30.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.830][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.830][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:30.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:30.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.846][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:30.846][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:30.846][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.846][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:30.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:30.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.861][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:30.861][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:30.861][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.861][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.861][ef$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:30.861][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:30.861][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.861][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.861][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:30.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:30.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.877][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:30.877][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:30.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.877][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:30.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:30.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.892][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:30.892][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:30.892][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.892][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.892][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:30.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:30.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.892][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:30.908][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:30.908][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.908][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.908][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:30.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:30.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.908][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:30.924][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:30.924][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.924][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.924][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:30.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:30.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:30.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:30.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:30.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:30.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:30.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:30.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:30.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:30.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:30.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:30.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:30.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:30.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:30.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:30.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:30.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:30.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:30.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:30.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:30.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:30.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:30.971][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2022-03-17 18:34:30.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:30.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:30.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:30.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:30.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:30.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:30.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:30.971][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:30.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:30.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:30.986][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:30.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:30.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:30.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:30.986][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2022-03-17 18:34:30.986][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-03-17 18:34:30.986][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2022-03-17 18:34:30.986][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-03-17 18:34:30.986][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-03-17 18:34:30.986][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-03-17 18:34:30.986][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-03-17 18:34:30.986][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-03-17 18:34:30.986][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-03-17 18:34:31.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:31.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:31.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:31.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:31.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:31.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:31.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:31.002][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.DEBUG[2022-03-17 18:34:31.002][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:34:31.002][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:34:31.017][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.TRACE[2022-03-17 18:34:31.533][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662).
biodb.DEBUG[2022-03-17 18:34:32.033][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:34:32.033][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.content"
biodb.TRACE[2022-03-17 18:34:32.049][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.request"
biodb.TRACE[2022-03-17 18:34:32.064][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml"
biodb.DEBUG[2022-03-17 18:34:32.064][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-03-17 18:34:32.080][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-03-17 18:34:32.080][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-03-17 18:34:32.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:32.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:32.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:32.096][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:32.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:32.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:32.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:32.111][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:32.111][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:32.111][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:32.111][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:32.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:32.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:32.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:32.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:32.111][ef$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:32.111][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:32.111][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:32.111][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:32.111][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:32.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:32.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:32.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:32.127][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:32.127][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:32.127][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:32.127][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:32.127][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:32.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:32.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:32.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:32.142][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:32.142][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:32.142][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:32.142][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:32.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:32.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:32.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:32.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:32.142][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:32.142][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:32.142][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:32.142][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:32.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:32.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:32.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:32.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:32.158][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:32.158][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:32.158][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:32.158][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:32.158][ef$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:32.158][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:32.158][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:32.158][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:32.158][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:32.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:32.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:32.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:32.174][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:32.174][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:32.174][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:32.174][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:32.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:32.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:32.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:32.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:32.189][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:32.189][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:32.189][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:32.189][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:32.189][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:32.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:32.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:32.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:32.189][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:32.189][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:32.189][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:32.189][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:32.189][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:32.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:32.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:32.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:32.205][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:32.205][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:32.205][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:32.205][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:32.205][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:32.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:32.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:32.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:32.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:32.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:32.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:32.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:32.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:32.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:32.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:32.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:32.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:32.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:32.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:32.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:32.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:32.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:32.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:32.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:32.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:32.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:32.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:32.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:32.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:32.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:32.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:32.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:32.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:32.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:32.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:32.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:32.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:32.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:32.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:32.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:32.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:32.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:32.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:32.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:32.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:32.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:32.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:32.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:32.252][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2022-03-17 18:34:32.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:32.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:32.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:32.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:32.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:32.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:32.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:32.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:32.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:32.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:32.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:32.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:32.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:32.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:32.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:32.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:32.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:32.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:32.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:32.283][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2022-03-17 18:34:32.283][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-03-17 18:34:32.283][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2022-03-17 18:34:32.283][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-03-17 18:34:32.283][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-03-17 18:34:32.283][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-03-17 18:34:32.283][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-03-17 18:34:32.283][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-03-17 18:34:32.283][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-03-17 18:34:32.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:32.283][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:32.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:32.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:32.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:32.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:32.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:32.299][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.DEBUG[2022-03-17 18:34:32.299][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:34:32.299][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:34:32.299][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.TRACE[2022-03-17 18:34:32.783][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084).
biodb.DEBUG[2022-03-17 18:34:33.330][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:34:33.346][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.content"
biodb.TRACE[2022-03-17 18:34:33.361][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.request"
biodb.TRACE[2022-03-17 18:34:33.377][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml"
biodb.DEBUG[2022-03-17 18:34:33.377][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-03-17 18:34:33.392][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-03-17 18:34:33.392][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-03-17 18:34:33.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:33.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:33.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:33.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:33.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:33.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:33.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:33.424][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:33.424][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:33.424][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:33.424][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:33.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:33.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:33.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:33.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:33.424][ef$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:33.424][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:33.424][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:33.424][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:33.439][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:33.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:33.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:33.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:33.439][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:33.439][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:33.439][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:33.439][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:33.439][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:33.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:33.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:33.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:33.455][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:33.455][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:33.455][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:33.455][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:33.455][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:33.455][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:33.455][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:33.455][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:33.455][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:33.455][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:33.471][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:33.471][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:33.471][ef$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:33.471][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:33.471][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:33.471][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:33.471][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:33.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:33.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:33.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:33.471][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:33.486][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:33.486][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:33.486][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:33.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:33.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:33.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:33.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:33.486][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:33.486][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:33.486][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:33.486][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:33.502][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:33.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:33.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:33.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:33.502][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:33.502][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:33.502][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:33.502][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:33.502][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:33.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:33.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:33.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:33.517][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:33.517][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:33.517][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:33.517][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:33.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:33.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:33.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:33.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:33.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:33.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:33.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:33.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:33.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:33.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:33.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:33.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:33.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:33.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:33.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:33.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:33.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:33.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:33.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:33.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:33.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:33.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:33.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:33.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:33.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:33.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:33.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:33.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:33.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:33.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:33.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:33.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:33.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:33.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:33.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:33.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:33.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:33.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:33.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:33.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:33.564][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2022-03-17 18:34:33.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:33.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:33.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:33.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:33.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:33.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:33.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:33.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:33.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:33.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:33.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:33.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:33.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:33.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:33.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:33.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:33.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:33.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:33.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:33.596][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2022-03-17 18:34:33.596][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-03-17 18:34:33.596][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2022-03-17 18:34:33.596][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-03-17 18:34:33.596][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-03-17 18:34:33.596][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-03-17 18:34:33.596][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-03-17 18:34:33.596][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-03-17 18:34:33.596][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-03-17 18:34:33.611][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:33.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:33.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:33.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:33.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:33.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:33.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:33.611][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.DEBUG[2022-03-17 18:34:33.611][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:34:33.611][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:34:33.627][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.TRACE[2022-03-17 18:34:34.127][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086).
biodb.DEBUG[2022-03-17 18:34:34.642][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:34:34.658][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.content"
biodb.TRACE[2022-03-17 18:34:34.689][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.request"
biodb.TRACE[2022-03-17 18:34:34.721][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml"
biodb.DEBUG[2022-03-17 18:34:34.721][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-03-17 18:34:34.752][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-03-17 18:34:34.752][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-03-17 18:34:34.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:34.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:34.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:34.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:34.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:34.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:34.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:34.767][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:34.767][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:34.767][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:34.767][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:34.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:34.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:34.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:34.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:34.783][ef$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:34.783][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:34.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:34.799][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:34.799][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:34.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:34.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:34.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:34.814][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:34.814][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:34.814][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:34.814][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:34.814][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:34.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:34.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:34.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:34.830][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:34.830][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:34.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:34.830][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:34.830][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:34.830][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:34.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:34.830][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:34.830][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:34.830][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:34.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:34.830][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:34.830][ef$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:34.830][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:34.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:34.846][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:34.846][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:34.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:34.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:34.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:34.846][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:34.846][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:34.846][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:34.846][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:34.846][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:34.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:34.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:34.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:34.861][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:34.861][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:34.861][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:34.861][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:34.861][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:34.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:34.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:34.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:34.877][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:34.877][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:34.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:34.877][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:34.877][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:34.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:34.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:34.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:34.877][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:34.877][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:34.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:34.877][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:34.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:34.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:34.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:34.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:34.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:34.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:34.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:34.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:34.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:34.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:34.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:34.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:34.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:34.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:34.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:34.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:34.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:34.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:34.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:34.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:34.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:34.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:34.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:34.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:34.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:34.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:34.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:34.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:34.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:34.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:34.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:34.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:34.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:34.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:34.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:34.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:34.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:34.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:34.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:34.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:34.924][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2022-03-17 18:34:34.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:34.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:34.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:34.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:34.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:34.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:34.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:34.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:34.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:34.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:34.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:34.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:34.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:34.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:34.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:34.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:34.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:34.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:34.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:34.955][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2022-03-17 18:34:34.955][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-03-17 18:34:34.955][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2022-03-17 18:34:34.955][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-03-17 18:34:34.955][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-03-17 18:34:34.955][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-03-17 18:34:34.955][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-03-17 18:34:34.955][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-03-17 18:34:34.955][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-03-17 18:34:34.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:34.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:34.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:34.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:34.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:34.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:34.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:34.971][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.DEBUG[2022-03-17 18:34:34.971][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:34:34.971][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:34:34.971][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.TRACE[2022-03-17 18:34:35.455][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123).
biodb.DEBUG[2022-03-17 18:34:35.939][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:34:35.955][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.content"
biodb.TRACE[2022-03-17 18:34:35.971][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.request"
biodb.TRACE[2022-03-17 18:34:35.986][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml"
biodb.DEBUG[2022-03-17 18:34:35.986][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-03-17 18:34:36.002][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-03-17 18:34:36.002][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-03-17 18:34:36.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:36.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:36.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:36.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:36.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:36.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:36.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:36.017][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:36.017][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:36.017][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:36.017][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:36.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:36.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:36.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:36.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:36.033][ef$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:36.033][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:36.033][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:36.033][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:36.033][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:36.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:36.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:36.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:36.033][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:36.033][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:36.033][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:36.033][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:36.033][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:36.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:36.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:36.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:36.049][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:36.049][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:36.049][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:36.049][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:36.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:36.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:36.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:36.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:36.064][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:36.064][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:36.064][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:36.064][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:36.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:36.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:36.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:36.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:36.080][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:36.080][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:36.080][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:36.080][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:36.080][ef$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:36.080][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:36.080][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:36.080][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:36.080][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:36.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:36.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:36.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:36.096][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:36.096][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:36.096][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:36.096][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:36.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:36.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:36.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:36.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:36.096][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:36.096][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:36.096][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:36.096][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:36.111][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:36.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:36.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:36.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:36.111][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:36.111][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:36.111][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:36.111][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:36.111][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:36.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:36.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:36.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:36.127][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:36.127][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:36.127][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:36.127][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:36.127][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:36.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:36.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:36.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:36.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:36.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:36.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:36.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:36.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:36.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:36.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:36.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:36.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:36.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:36.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:36.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:36.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:36.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:36.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:36.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:36.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:36.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:36.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:36.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:36.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:36.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:36.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:36.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:36.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:36.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:36.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:36.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:36.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:36.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:36.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:36.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:36.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:36.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:36.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:36.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:36.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:36.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:36.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:36.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:36.174][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2022-03-17 18:34:36.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:36.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:36.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:36.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:36.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:36.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:36.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:36.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:36.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:36.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:36.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:36.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:36.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:36.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:36.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:36.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:36.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:36.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:36.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:36.205][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2022-03-17 18:34:36.205][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-03-17 18:34:36.205][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2022-03-17 18:34:36.205][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-03-17 18:34:36.205][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-03-17 18:34:36.205][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-03-17 18:34:36.205][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-03-17 18:34:36.205][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-03-17 18:34:36.205][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-03-17 18:34:36.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:36.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:36.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:36.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:36.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:36.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:36.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:36.221][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.DEBUG[2022-03-17 18:34:36.221][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:34:36.221][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:34:36.221][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.TRACE[2022-03-17 18:34:36.705][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117).
biodb.DEBUG[2022-03-17 18:34:37.189][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:34:37.205][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.content"
biodb.TRACE[2022-03-17 18:34:37.221][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.request"
biodb.TRACE[2022-03-17 18:34:37.221][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml"
biodb.DEBUG[2022-03-17 18:34:37.236][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-03-17 18:34:37.252][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-03-17 18:34:37.252][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-03-17 18:34:37.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:37.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:37.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:37.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:37.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:37.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:37.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:37.252][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:37.252][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:37.267][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:37.267][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:37.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:37.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:37.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:37.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:37.267][ef$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:37.267][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:37.267][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:37.267][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:37.267][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:37.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:37.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:37.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:37.283][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:37.283][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:37.283][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:37.283][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:37.283][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:37.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:37.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:37.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:37.283][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:37.299][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:37.299][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:37.299][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:37.299][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:37.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:37.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:37.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:37.299][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:37.299][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:37.314][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:37.314][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:37.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:37.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:37.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:37.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:37.314][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:37.314][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:37.314][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:37.314][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:37.314][ef$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:37.314][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:37.314][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:37.330][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:37.330][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:37.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:37.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:37.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:37.330][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:37.330][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:37.330][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:37.330][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:37.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:37.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:37.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:37.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:37.346][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:37.346][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:37.346][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:37.346][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:37.346][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:37.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:37.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:37.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:37.346][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:37.346][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:37.361][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:37.361][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:37.361][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:37.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:37.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:37.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:37.361][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:37.361][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:37.361][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:37.361][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:37.361][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:37.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:37.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:37.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:37.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:37.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:37.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:37.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:37.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:37.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:37.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:37.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:37.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:37.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:37.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:37.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:37.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:37.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:37.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:37.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:37.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:37.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:37.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:37.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:37.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:37.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:37.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:37.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:37.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:37.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:37.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:37.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:37.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:37.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:37.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:37.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:37.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:37.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:37.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:37.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:37.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:37.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:37.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:37.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:37.408][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2022-03-17 18:34:37.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:37.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:37.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:37.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:37.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:37.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:37.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:37.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:37.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:37.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:37.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:37.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:37.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:37.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:37.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:37.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:37.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:37.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:37.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:37.439][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2022-03-17 18:34:37.439][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-03-17 18:34:37.439][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2022-03-17 18:34:37.439][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-03-17 18:34:37.439][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-03-17 18:34:37.439][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-03-17 18:34:37.439][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-03-17 18:34:37.439][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-03-17 18:34:37.439][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-03-17 18:34:37.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:37.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:37.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:37.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:37.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:37.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:37.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:37.455][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.DEBUG[2022-03-17 18:34:37.455][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:34:37.455][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:34:37.455][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.TRACE[2022-03-17 18:34:37.924][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307).
biodb.DEBUG[2022-03-17 18:34:38.424][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:34:38.439][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.content"
biodb.TRACE[2022-03-17 18:34:38.455][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.request"
biodb.TRACE[2022-03-17 18:34:38.455][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml"
biodb.DEBUG[2022-03-17 18:34:38.471][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-03-17 18:34:38.486][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-03-17 18:34:38.486][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-03-17 18:34:38.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:38.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:38.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:38.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:38.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:38.486][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:38.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:38.486][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:38.502][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:38.502][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:38.502][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:38.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:38.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:38.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:38.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:38.502][ef$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:38.502][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:38.502][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:38.502][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:38.502][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:38.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:38.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:38.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:38.517][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:38.517][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:38.517][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:38.517][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:38.517][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:38.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:38.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:38.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:38.533][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:38.533][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:38.533][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:38.533][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:38.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:38.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:38.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:38.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:38.549][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:38.549][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:38.549][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:38.549][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:38.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:38.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:38.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:38.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:38.549][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:38.549][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:38.549][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:38.549][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:38.549][ef$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:38.549][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:38.564][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:38.564][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:38.564][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:38.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:38.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:38.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:38.564][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:38.564][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:38.564][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:38.564][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:38.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:38.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:38.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:38.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:38.580][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:38.580][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:38.580][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:38.580][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:38.580][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:38.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:38.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:38.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:38.580][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:38.596][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:38.596][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:38.596][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:38.596][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:38.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:38.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:38.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:38.596][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:38.596][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:38.596][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:38.596][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:38.596][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:38.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:38.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:38.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:38.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:38.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:38.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:38.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:38.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:38.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:38.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:38.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:38.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:38.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:38.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:38.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:38.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:38.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:38.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:38.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:38.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:38.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:38.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:38.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:38.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:38.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:38.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:38.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:38.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:38.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:38.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:38.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:38.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:38.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:38.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:38.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:38.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:38.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:38.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:38.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:38.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:38.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:38.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:38.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:38.767][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2022-03-17 18:34:38.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:38.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:38.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:38.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:38.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:38.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:38.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:38.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:38.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:38.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:38.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:38.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:38.783][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:38.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:38.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:38.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:38.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:38.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:38.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:38.783][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2022-03-17 18:34:38.783][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-03-17 18:34:38.783][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2022-03-17 18:34:38.783][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-03-17 18:34:38.799][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-03-17 18:34:38.799][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-03-17 18:34:38.799][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-03-17 18:34:38.799][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-03-17 18:34:38.799][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-03-17 18:34:38.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:38.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:38.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:38.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:38.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:38.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:38.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:38.799][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.DEBUG[2022-03-17 18:34:38.814][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:34:38.814][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:34:38.814][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.TRACE[2022-03-17 18:34:39.267][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803).
biodb.DEBUG[2022-03-17 18:34:39.752][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:34:39.767][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.content"
biodb.TRACE[2022-03-17 18:34:39.767][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.request"
biodb.TRACE[2022-03-17 18:34:39.783][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml"
biodb.DEBUG[2022-03-17 18:34:39.799][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-03-17 18:34:39.814][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-03-17 18:34:39.814][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-03-17 18:34:39.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:39.814][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:39.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:39.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:39.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:39.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:39.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:39.830][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:39.830][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:39.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:39.830][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:39.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:39.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:39.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:39.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:39.845][ef$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:39.845][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:39.845][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:39.845][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:39.845][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:39.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:39.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:39.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:39.861][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:39.861][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:39.861][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:39.861][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:39.861][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:39.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:39.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:39.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:39.861][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:39.861][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:39.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:39.877][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:39.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:39.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:39.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:39.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:39.877][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:39.877][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:39.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:39.877][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:39.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:39.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:39.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:39.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:39.892][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:39.892][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:39.892][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:39.892][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:39.892][ef$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:39.892][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:39.892][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:39.908][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:39.908][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:39.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:39.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:39.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:39.908][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:39.908][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:39.908][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:39.908][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:39.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:39.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:39.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:39.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:39.924][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:39.924][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:39.924][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:39.924][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:39.924][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:39.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:39.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:39.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:39.939][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:39.939][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:39.939][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:39.939][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:39.939][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:39.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:39.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:39.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:39.955][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:39.955][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:39.955][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:39.955][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:39.955][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:39.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:39.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:39.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:39.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:39.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:39.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:39.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:39.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:39.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:39.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:39.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:39.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:39.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:39.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:39.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:39.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:39.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:39.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:39.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:39.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:39.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:39.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:39.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:39.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:39.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:39.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:39.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:39.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:39.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:40.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:40.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:40.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:40.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:40.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:40.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:40.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:40.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:40.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:40.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:40.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:40.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:40.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:40.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:40.002][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2022-03-17 18:34:40.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:40.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:40.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:40.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:40.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:40.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:40.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:40.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:40.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:40.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:40.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:40.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:40.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:40.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:40.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:40.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:40.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:40.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:40.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:40.033][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2022-03-17 18:34:40.033][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-03-17 18:34:40.033][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2022-03-17 18:34:40.033][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-03-17 18:34:40.033][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-03-17 18:34:40.033][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-03-17 18:34:40.033][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-03-17 18:34:40.033][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-03-17 18:34:40.033][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-03-17 18:34:40.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:40.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:40.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:40.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:40.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:40.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:40.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:40.049][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.DEBUG[2022-03-17 18:34:40.049][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:34:40.049][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:34:40.049][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.TRACE[2022-03-17 18:34:40.517][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962).
biodb.DEBUG[2022-03-17 18:34:41.002][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:34:41.017][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.content"
biodb.TRACE[2022-03-17 18:34:41.017][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.request"
biodb.TRACE[2022-03-17 18:34:41.033][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml"
biodb.DEBUG[2022-03-17 18:34:41.033][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-03-17 18:34:41.049][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-03-17 18:34:41.049][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-03-17 18:34:41.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:41.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:41.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:41.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:41.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:41.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:41.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:41.064][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:41.064][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:41.064][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.064][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:41.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:41.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.080][ef$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:41.080][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:41.080][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.080][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.080][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:41.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:41.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.095][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:41.095][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:41.095][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.095][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.095][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:41.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:41.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.095][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:41.095][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:41.095][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.095][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.095][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:41.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:41.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.111][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:41.111][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:41.111][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.111][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.111][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:41.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:41.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.127][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:41.127][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:41.127][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.127][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.127][ef$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:41.127][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.127][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.127][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.127][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:41.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.127][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:41.127][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:41.142][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.142][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:41.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:41.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.142][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:41.142][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:41.142][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.142][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.142][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:41.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:41.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.158][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:41.158][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:41.158][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.158][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.158][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:41.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:41.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.174][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:41.174][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:41.174][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.174][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.174][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:41.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:41.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:41.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:41.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:41.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:41.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:41.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:41.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:41.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:41.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:41.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:41.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:41.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:41.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:41.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:41.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:41.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:41.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:41.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:41.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:41.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:41.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:41.220][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2022-03-17 18:34:41.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:41.267][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:41.267][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-03-17 18:34:41.267][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-03-17 18:34:41.267][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:34:41.267][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-03-17 18:34:41.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:41.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:41.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:41.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:41.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:41.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:41.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:41.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:41.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:41.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:41.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:41.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:41.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:41.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:41.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:41.330][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.330][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.330][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.330][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.330][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:41.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:41.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:41.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:41.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:41.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:41.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:41.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:41.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:41.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:41.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:41.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:41.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:41.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:41.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:41.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:41.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:41.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:41.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:41.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:41.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:41.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:41.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:41.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:41.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:41.408][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:41.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:41.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:41.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:41.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:41.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:41.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:41.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:41.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:41.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:41.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:41.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:41.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:41.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:41.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:41.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:41.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:41.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:41.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:41.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:41.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:41.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:41.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:41.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:41.470][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:41.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:41.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:41.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:41.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:41.486][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:41.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:41.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:41.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:41.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:41.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:41.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:41.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:41.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:41.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:41.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:41.517][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:41.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:41.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:41.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:41.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:41.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:41.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:41.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:41.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:41.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:41.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:41.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:41.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:41.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:41.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:41.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:41.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:41.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:41.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:41.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:41.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:41.564][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:41.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:41.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:41.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:41.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:41.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:41.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:41.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:41.580][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:41.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:41.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:41.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:41.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:41.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:41.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:41.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:41.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:41.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:41.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:41.611][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:41.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:41.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:41.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:41.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:41.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:41.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:41.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:41.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:41.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:41.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:41.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:41.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:41.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:41.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:41.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:41.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:41.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:41.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:41.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:41.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:41.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:41.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:41.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:41.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:41.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:41.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:41.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:41.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:41.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:41.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:41.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:41.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:41.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:41.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:41.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:41.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:41.752][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:41.767][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:34:41.767][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:34:41.767][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-03-17 18:34:42.236][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-03-17 18:34:42.720][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:34:42.736][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1eb5a44d25716d90ff717fcfe93533e3.content"
biodb.TRACE[2022-03-17 18:34:42.736][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1eb5a44d25716d90ff717fcfe93533e3.request"
biodb.DEBUG[2022-03-17 18:34:42.752][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:42.752][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:34:42.752][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:34:42.752][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-03-17 18:34:43.892][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-03-17 18:34:44.408][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:34:44.424][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ef91a3654a792571304ae6f83c5871b.content"
biodb.TRACE[2022-03-17 18:34:44.439][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ef91a3654a792571304ae6f83c5871b.request"
biodb.DEBUG[2022-03-17 18:34:44.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:44.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:44.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:44.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:44.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:44.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:44.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:44.455][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2022-03-17 18:34:44.455][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-03-17 18:34:44.455][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2022-03-17 18:34:44.455][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-03-17 18:34:44.455][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-03-17 18:34:44.455][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-03-17 18:34:44.455][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-03-17 18:34:44.455][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-03-17 18:34:44.455][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-03-17 18:34:44.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:44.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:44.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:44.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:44.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:44.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:44.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:44.470][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648".
biodb.DEBUG[2022-03-17 18:34:44.470][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:34:44.470][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:34:44.470][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648".
biodb.TRACE[2022-03-17 18:34:44.970][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648).
biodb.DEBUG[2022-03-17 18:34:45.455][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:34:45.470][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/844829d8afb6d338ebac906e62f6cb8e.content"
biodb.TRACE[2022-03-17 18:34:45.486][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/844829d8afb6d338ebac906e62f6cb8e.request"
biodb.TRACE[2022-03-17 18:34:45.502][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml"
biodb.DEBUG[2022-03-17 18:34:45.502][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-03-17 18:34:45.517][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-03-17 18:34:45.517][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-03-17 18:34:45.517][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:45.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:45.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:45.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:45.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:45.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:45.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:45.533][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:45.533][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:45.533][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.533][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:45.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:45.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.549][ef$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:45.549][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:45.549][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.549][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.549][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:45.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:45.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.549][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:45.549][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:45.549][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.549][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.549][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:45.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:45.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.564][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:45.564][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:45.564][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.564][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.564][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:45.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:45.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.580][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:45.580][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:45.580][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.580][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.580][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:45.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:45.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.580][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:45.580][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:45.580][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.580][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.595][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:45.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:45.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.595][ef$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:45.595][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:45.595][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.595][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.595][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:45.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:45.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.611][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:45.611][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:45.611][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.611][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:45.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:45.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.611][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:45.611][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:45.611][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.627][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.627][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:45.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:45.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.627][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:45.627][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:45.627][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.627][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.627][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:45.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:45.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.642][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:45.642][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:45.642][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.642][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.642][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:45.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:45.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:45.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:45.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:45.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:45.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:45.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:45.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:45.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:45.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:45.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:45.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:45.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:45.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:45.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:45.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:45.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:45.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:45.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:45.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:45.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:45.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:45.689][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2022-03-17 18:34:45.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:45.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:45.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:45.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:45.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:45.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:45.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:45.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:45.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:45.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:45.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:45.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:45.705][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:45.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:45.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:45.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:45.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:45.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:45.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:45.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:45.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:45.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:45.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:45.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:45.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:45.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:45.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:45.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:45.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:45.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:45.736][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2022-03-17 18:34:45.736][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-03-17 18:34:45.736][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2022-03-17 18:34:45.736][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-03-17 18:34:45.736][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-03-17 18:34:45.736][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-03-17 18:34:45.736][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-03-17 18:34:45.736][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-03-17 18:34:45.736][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-03-17 18:34:45.736][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:45.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:45.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:45.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:45.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:45.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:45.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:45.752][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447".
biodb.DEBUG[2022-03-17 18:34:45.752][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:34:45.752][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:34:45.752][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447".
biodb.TRACE[2022-03-17 18:34:46.236][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447).
biodb.DEBUG[2022-03-17 18:34:46.767][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:34:46.783][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ceadc6ac0ce91f601616e22be7c76851.content"
biodb.TRACE[2022-03-17 18:34:46.783][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ceadc6ac0ce91f601616e22be7c76851.request"
biodb.TRACE[2022-03-17 18:34:46.799][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml"
biodb.DEBUG[2022-03-17 18:34:46.799][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-03-17 18:34:46.814][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-03-17 18:34:46.814][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-03-17 18:34:46.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:46.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:46.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:46.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:46.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:46.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:46.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:46.830][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:46.830][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:46.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:46.830][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:46.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:46.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:46.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:46.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:46.845][ef$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:46.845][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:46.845][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:46.845][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:46.845][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:46.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:46.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:46.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:46.861][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:46.861][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:46.861][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:46.861][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:46.861][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:46.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:46.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:46.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:46.861][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:46.861][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:46.861][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:46.861][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:46.861][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:46.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:46.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:46.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:46.877][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:46.877][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:46.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:46.877][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:46.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:46.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:46.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:46.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:46.892][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:46.892][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:46.892][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:46.892][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:46.892][ef$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:46.892][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:46.892][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:46.892][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:46.892][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:46.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:46.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:46.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:46.892][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:46.908][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:46.908][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:46.908][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:46.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:46.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:46.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:46.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:46.908][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:46.908][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:46.908][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:46.908][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:46.908][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:46.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:46.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:46.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:46.924][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:46.924][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:46.924][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:46.924][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:46.924][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:46.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:46.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:46.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:46.924][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:46.939][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:46.939][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:46.939][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:46.939][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:46.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:46.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:46.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:46.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:46.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:46.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:46.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:46.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:46.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:46.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:46.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:46.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:46.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:46.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:46.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:46.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:46.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:46.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:46.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:46.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:46.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:46.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:46.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:46.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:46.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:46.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:46.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:46.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:46.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:46.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:46.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:46.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:46.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:46.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:46.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:46.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:46.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:46.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:46.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:46.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:46.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:46.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:46.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:46.986][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2022-03-17 18:34:46.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:46.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:46.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:46.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:46.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:46.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.049][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:47.049][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-03-17 18:34:47.049][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-03-17 18:34:47.049][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:34:47.049][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-03-17 18:34:47.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.283][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.377][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.377][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.408][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.486][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:47.486][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-03-17 18:34:47.486][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-03-17 18:34:47.486][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:34:47.486][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-03-17 18:34:47.517][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.580][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.611][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.736][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.861][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.908][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:47.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:47.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:47.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:47.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:47.986][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:47.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:47.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:47.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:47.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:47.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:47.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:48.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:48.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:48.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:48.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:48.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:48.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:48.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:48.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:48.017][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-03-17 18:34:48.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-03-17 18:34:48.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:48.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-03-17 18:34:48.033][biodb::testThat]
biodb.INFO [2022-03-17 18:34:48.033][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2022-03-17 18:34:48.033][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:48.033][biodb::testThat]
biodb.TRACE[2022-03-17 18:34:48.033][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:48.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:48.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:48.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:48.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:48.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:48.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:48.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:48.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:48.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:48.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:48.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:48.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:48.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:48.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:48.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:48.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:48.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:48.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:48.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:48.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:48.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:48.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:48.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:48.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:48.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:48.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:48.205][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:48.205][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-03-17 18:34:48.205][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-03-17 18:34:48.205][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:34:48.205][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-03-17 18:34:48.220][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:48.220][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-03-17 18:34:48.220][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-03-17 18:34:48.220][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:34:48.220][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-03-17 18:34:48.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:48.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:48.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:48.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:48.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:48.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:48.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:48.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:48.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:48.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:48.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:48.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:48.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:48.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:48.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:48.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:48.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:48.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:48.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:48.236][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:48.252][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-03-17 18:34:48.252][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-03-17 18:34:48.252][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:34:48.252][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-03-17 18:34:48.252][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-03-17 18:34:48.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:48.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:48.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:48.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:48.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:48.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:48.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:48.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:48.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:48.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:48.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:48.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:48.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:48.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:48.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:48.267][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:48.267][private$selectFields]
biodb.TRACE[2022-03-17 18:34:48.267][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-03-17 18:34:48.267][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-03-17 18:34:48.267][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:48.267][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:48.267][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:48.267][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:48.283][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:48.283][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:48.283][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:48.283][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:48.283][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:48.283][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:48.283][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:48.283][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:48.283][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:48.283][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:48.283][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:48.283][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-03-17 18:34:48.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:48.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:48.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:48.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:48.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:48.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:48.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:48.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:48.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:48.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:48.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:48.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:48.299][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-03-17 18:34:48.299][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-03-17 18:34:48.299][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-03-17 18:34:48.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:48.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:48.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:48.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:48.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:48.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:48.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:48.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:48.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:48.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:48.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:48.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:48.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:48.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:48.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:48.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:48.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:48.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:48.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:48.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:48.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:48.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:48.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:48.502][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:48.502][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:34:48.502][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:34:48.502][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-03-17 18:34:49.002][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-03-17 18:34:49.627][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:34:49.658][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content"
biodb.TRACE[2022-03-17 18:34:49.705][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.request"
biodb.DEBUG[2022-03-17 18:34:49.720][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:49.720][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:34:49.720][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:34:49.720][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-03-17 18:34:50.236][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-03-17 18:34:50.783][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:34:50.798][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content"
biodb.TRACE[2022-03-17 18:34:50.830][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.request"
biodb.DEBUG[2022-03-17 18:34:50.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:50.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:50.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:50.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:50.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:50.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:50.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:50.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:50.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:50.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:50.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:50.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:50.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:50.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:50.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:50.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:50.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:50.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:50.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:50.861][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:50.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:50.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:50.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:50.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:50.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:50.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:50.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:50.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:50.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:50.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:50.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:50.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:50.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:50.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:50.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:50.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:50.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:50.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:50.877][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:50.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:50.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:50.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:50.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:50.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:50.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:50.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:50.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:50.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:50.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:50.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:50.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:50.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:50.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:50.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:50.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:50.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:50.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:50.923][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-03-17 18:34:50.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:50.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:50.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:50.939][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:50.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:50.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:50.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:50.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:50.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:50.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:50.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:50.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:50.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:50.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:50.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:50.955][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:50.955][private$selectFields]
biodb.TRACE[2022-03-17 18:34:50.955][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-03-17 18:34:50.955][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-03-17 18:34:50.955][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:50.955][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:50.955][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:50.970][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:50.970][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:50.970][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:50.970][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:50.970][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:50.970][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:50.970][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:50.970][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:50.970][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:50.970][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:50.970][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:50.970][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:50.970][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-03-17 18:34:50.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:50.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:50.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:50.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:50.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:50.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:50.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:50.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:50.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:50.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:50.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:50.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:50.986][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-03-17 18:34:50.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:50.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:50.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:50.986][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:50.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:50.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:51.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:51.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.033][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:51.033][private$selectFields]
biodb.TRACE[2022-03-17 18:34:51.033][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-03-17 18:34:51.033][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-03-17 18:34:51.033][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:51.033][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.033][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.033][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.033][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.033][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.033][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.033][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.033][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.033][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:51.048][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:51.048][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.048][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.048][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.048][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.048][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-03-17 18:34:51.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.064][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-03-17 18:34:51.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:51.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:51.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:51.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:51.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:51.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:51.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:51.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.080][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:51.080][private$selectFields]
biodb.TRACE[2022-03-17 18:34:51.080][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-03-17 18:34:51.080][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-03-17 18:34:51.080][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:51.080][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.080][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.080][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.080][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.080][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.080][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.080][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.095][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.095][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:51.095][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:51.095][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.095][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.095][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.095][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.095][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-03-17 18:34:51.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.111][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-03-17 18:34:51.111][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-03-17 18:34:51.111][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-03-17 18:34:51.111][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-03-17 18:34:51.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-03-17 18:34:51.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-03-17 18:34:51.127][biodb::testThat]
biodb.INFO [2022-03-17 18:34:51.127][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2022-03-17 18:34:51.127][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:51.127][biodb::testThat]
biodb.TRACE[2022-03-17 18:34:51.127][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:51.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:51.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:51.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:51.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:51.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:51.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:51.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:51.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:51.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:51.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:51.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:51.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:51.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:51.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:51.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:51.173][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:51.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:51.283][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:51.283][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-03-17 18:34:51.283][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-03-17 18:34:51.283][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:34:51.298][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-03-17 18:34:51.298][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:51.298][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-03-17 18:34:51.298][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-03-17 18:34:51.298][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:34:51.298][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-03-17 18:34:51.298][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:51.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:51.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:51.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:51.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:51.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:51.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:51.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:51.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:51.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:51.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:51.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:51.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:51.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:51.330][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:51.330][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-03-17 18:34:51.330][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-03-17 18:34:51.330][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:34:51.330][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-03-17 18:34:51.330][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-03-17 18:34:51.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:51.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:51.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:51.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:51.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:51.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:51.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:51.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.345][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:51.345][private$selectFields]
biodb.TRACE[2022-03-17 18:34:51.345][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-03-17 18:34:51.345][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-03-17 18:34:51.361][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:51.361][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.361][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.361][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.361][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.361][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.361][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.361][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.361][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.361][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:51.361][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:51.361][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.361][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.361][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.361][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.361][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-03-17 18:34:51.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.377][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-03-17 18:34:51.377][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-03-17 18:34:51.377][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-03-17 18:34:51.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:51.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:51.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:51.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:51.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:51.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:51.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:51.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:51.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:51.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:51.423][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:51.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:51.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:51.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:51.423][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:51.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:51.549][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:51.549][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-03-17 18:34:51.549][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-03-17 18:34:51.549][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:34:51.549][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-03-17 18:34:51.564][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:51.564][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-03-17 18:34:51.564][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-03-17 18:34:51.564][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:34:51.564][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-03-17 18:34:51.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:51.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:51.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:51.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:51.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:51.580][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:51.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:51.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:51.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:51.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:51.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:51.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:51.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:51.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:51.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:51.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:51.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:51.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:51.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:51.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:51.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:51.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:51.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:51.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:51.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:51.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:51.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:51.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:51.611][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:51.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:51.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:51.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:51.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:51.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:51.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:51.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:51.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:51.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:51.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:51.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:51.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:51.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:51.627][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-03-17 18:34:51.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:51.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:51.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:51.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:51.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:51.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:51.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:51.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.642][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:51.642][private$selectFields]
biodb.TRACE[2022-03-17 18:34:51.642][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-03-17 18:34:51.642][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-03-17 18:34:51.642][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:51.658][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.658][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.658][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.658][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.658][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.658][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.658][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.658][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.658][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:51.658][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:51.658][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.658][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.658][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.658][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.658][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-03-17 18:34:51.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.673][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-03-17 18:34:51.673][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:51.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:51.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:51.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:51.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:51.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:51.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:51.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.689][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:51.689][private$selectFields]
biodb.TRACE[2022-03-17 18:34:51.705][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-03-17 18:34:51.705][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-03-17 18:34:51.705][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:51.705][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.705][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.705][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.705][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.705][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.705][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.705][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.705][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.705][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:51.705][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:51.705][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.705][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.705][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.705][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.705][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-03-17 18:34:51.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.720][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-03-17 18:34:51.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:51.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:51.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:51.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:51.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:51.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:51.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:51.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.736][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:51.736][private$selectFields]
biodb.TRACE[2022-03-17 18:34:51.736][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-03-17 18:34:51.736][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-03-17 18:34:51.736][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:51.752][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.752][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.752][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.752][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.752][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.752][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.752][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.752][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.752][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:51.752][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:51.752][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.752][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.752][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.752][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.752][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-03-17 18:34:51.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:51.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.767][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-03-17 18:34:51.767][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-03-17 18:34:51.767][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-03-17 18:34:51.783][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-03-17 18:34:51.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-03-17 18:34:51.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-03-17 18:34:51.783][biodb::testThat]
biodb.INFO [2022-03-17 18:34:51.783][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2022-03-17 18:34:51.783][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:51.783][biodb::testThat]
biodb.TRACE[2022-03-17 18:34:51.783][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:51.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:51.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:51.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:51.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:51.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:51.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:51.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:51.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:51.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:51.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:51.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:51.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:51.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:51.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:51.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:51.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:51.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:51.939][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:51.939][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-03-17 18:34:51.939][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-03-17 18:34:51.939][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:34:51.955][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-03-17 18:34:51.955][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:51.955][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-03-17 18:34:51.955][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-03-17 18:34:51.955][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:34:51.955][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-03-17 18:34:51.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:51.970][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:51.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:51.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:51.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:51.970][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:51.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:51.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:51.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:51.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:51.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:51.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:51.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:51.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:51.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:51.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:51.986][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:51.986][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-03-17 18:34:51.986][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-03-17 18:34:51.986][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:34:51.986][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-03-17 18:34:51.986][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-03-17 18:34:51.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:51.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:51.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:52.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:52.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:52.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:52.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:52.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.002][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:52.002][private$selectFields]
biodb.TRACE[2022-03-17 18:34:52.002][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-03-17 18:34:52.017][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-03-17 18:34:52.017][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:52.017][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.017][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.017][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.017][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.017][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.017][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.017][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.017][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.017][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:52.017][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:52.017][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.017][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.017][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.017][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.017][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-03-17 18:34:52.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.033][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-03-17 18:34:52.033][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-03-17 18:34:52.033][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-03-17 18:34:52.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:52.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:52.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:52.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:52.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:52.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:52.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:52.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:52.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:52.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:52.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:52.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:52.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:52.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:52.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:52.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:52.205][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:52.205][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-03-17 18:34:52.205][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-03-17 18:34:52.205][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:34:52.205][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-03-17 18:34:52.205][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:52.220][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-03-17 18:34:52.220][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-03-17 18:34:52.220][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:34:52.220][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-03-17 18:34:52.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:52.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:52.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:52.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:52.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:52.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:52.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:52.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:52.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:52.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:52.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:52.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:52.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:52.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:52.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:52.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:52.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:52.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:52.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:52.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:52.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:52.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:52.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:52.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:52.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:52.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:52.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:52.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:52.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:52.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:52.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:52.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:52.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:52.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:52.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:52.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:52.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:52.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:52.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:52.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:52.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:52.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:52.283][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-03-17 18:34:52.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:52.283][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:52.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:52.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:52.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:52.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:52.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:52.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.298][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:52.298][private$selectFields]
biodb.TRACE[2022-03-17 18:34:52.298][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-03-17 18:34:52.298][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-03-17 18:34:52.298][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:52.298][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.298][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.314][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.314][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.314][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.314][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.314][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.314][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.314][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:52.314][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:52.314][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.314][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.314][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.314][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.314][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-03-17 18:34:52.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.330][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-03-17 18:34:52.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:52.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:52.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:52.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:52.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:52.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:52.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:52.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.345][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:52.345][private$selectFields]
biodb.TRACE[2022-03-17 18:34:52.345][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-03-17 18:34:52.345][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-03-17 18:34:52.345][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:52.361][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.361][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.361][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.361][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.361][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.361][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.361][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.361][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.361][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:52.361][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:52.361][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.361][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.361][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.361][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.361][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-03-17 18:34:52.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.377][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-03-17 18:34:52.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:52.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:52.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:52.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:52.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:52.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:52.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:52.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.392][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:52.392][private$selectFields]
biodb.TRACE[2022-03-17 18:34:52.392][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-03-17 18:34:52.392][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-03-17 18:34:52.392][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:52.392][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.392][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.408][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.408][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.408][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.408][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.408][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.408][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.408][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:52.408][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-03-17 18:34:52.408][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.408][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.408][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.408][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.408][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-03-17 18:34:52.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:52.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:52.423][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-03-17 18:34:52.423][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-03-17 18:34:52.423][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-03-17 18:34:52.439][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-03-17 18:34:52.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-03-17 18:34:52.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:52.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-03-17 18:34:52.439][biodb::testThat]
biodb.INFO [2022-03-17 18:34:52.439][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2022-03-17 18:34:52.439][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:52.455][biodb::testThat]
biodb.DEBUG[2022-03-17 18:34:52.455][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2022-03-17 18:34:52.455][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-03-17 18:34:52.455][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2022-03-17 18:34:52.455][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-03-17 18:34:52.455][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-03-17 18:34:52.455][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-03-17 18:34:52.455][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-03-17 18:34:52.455][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-03-17 18:34:52.455][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-03-17 18:34:52.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:52.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:52.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:52.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:52.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:52.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:52.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:52.470][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGA".
biodb.DEBUG[2022-03-17 18:34:52.470][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:34:52.470][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:34:52.470][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGA".
biodb.TRACE[2022-03-17 18:34:53.048][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGA).
biodb.DEBUG[2022-03-17 18:34:53.611][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:34:53.642][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b5b4e4941cdc7bc8ff5e29f921c1e9db.content"
biodb.TRACE[2022-03-17 18:34:53.673][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b5b4e4941cdc7bc8ff5e29f921c1e9db.request"
biodb.TRACE[2022-03-17 18:34:53.705][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGA.xml"
biodb.DEBUG[2022-03-17 18:34:53.720][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-03-17 18:34:53.736][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-03-17 18:34:53.736][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-03-17 18:34:53.736][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:53.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:53.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:53.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:53.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:53.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:53.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:53.752][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:53.752][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:53.752][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:53.752][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:53.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:53.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:53.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:53.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:53.767][ef$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:53.767][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:53.767][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:53.767][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:53.767][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:53.767][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:53.767][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:53.767][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:53.767][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:53.767][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:53.767][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:53.767][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:53.783][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:53.783][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:53.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:53.783][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:53.783][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:53.783][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:53.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:53.783][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:53.783][ef$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:53.783][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:53.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:53.783][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:53.783][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:53.783][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:53.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:53.783][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:53.783][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:53.798][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:53.798][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:53.798][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:53.798][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:53.798][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:53.798][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:53.814][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:53.814][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:53.814][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:53.814][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:53.814][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:53.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:53.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:53.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:53.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:53.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:53.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:53.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:53.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:53.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:53.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:53.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:53.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:53.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:53.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:53.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:53.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:53.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:53.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:53.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:53.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:53.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:53.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:53.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:53.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:53.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:53.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:53.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:53.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:53.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:53.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:53.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:53.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:53.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:53.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:53.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:53.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:53.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:53.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:53.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:53.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:53.861][self$createEntryFromContent] Accession numbers: .
biodb.DEBUG[2022-03-17 18:34:53.861][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2022-03-17 18:34:53.861][biodb::testThat]
biodb.INFO [2022-03-17 18:34:53.861][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2022-03-17 18:34:53.861][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:53.861][biodb::testThat]
biodb.DEBUG[2022-03-17 18:34:53.861][function(conn, opt)] IDS: [4]: "WRONGB, 15440, 2528, 7799"
biodb.DEBUG[2022-03-17 18:34:53.877][private$loadEntries] Creating entries from ids [3]: "WRONGB, 2528, 7799".
biodb.DEBUG[2022-03-17 18:34:53.877][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2022-03-17 18:34:53.877][cch$loadFileContent] Trying to load 3 files from cache: [3]: "WRONGB, 2528, 7799".
biodb.TRACE[2022-03-17 18:34:53.877][cch$loadFileContent] file.exist = [3]: "FALSE, TRUE, FALSE".
biodb.TRACE[2022-03-17 18:34:53.877][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml".
biodb.DEBUG[2022-03-17 18:34:53.877][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-03-17 18:34:53.877][conn$getEntryContent] 2 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-03-17 18:34:53.877][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-03-17 18:34:53.877][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-03-17 18:34:53.877][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:53.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:53.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:53.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:53.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:53.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:53.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:53.892][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGB".
biodb.DEBUG[2022-03-17 18:34:53.892][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:34:53.892][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:34:53.892][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGB".
biodb.TRACE[2022-03-17 18:34:54.408][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGB).
biodb.DEBUG[2022-03-17 18:34:54.955][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:34:54.970][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32348f2b7cfb460a97c8a8aa145f239f.content"
biodb.TRACE[2022-03-17 18:34:55.002][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32348f2b7cfb460a97c8a8aa145f239f.request"
biodb.DEBUG[2022-03-17 18:34:55.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:55.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:55.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:55.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:55.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:55.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:55.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:55.033][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
biodb.DEBUG[2022-03-17 18:34:55.033][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:34:55.033][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:34:55.033][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
biodb.TRACE[2022-03-17 18:34:55.720][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
biodb.DEBUG[2022-03-17 18:34:56.283][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:34:56.298][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/07eb1d5438367a7b1616709944d88b07.content"
biodb.TRACE[2022-03-17 18:34:56.330][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/07eb1d5438367a7b1616709944d88b07.request"
biodb.TRACE[2022-03-17 18:34:56.345][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGB.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml"
biodb.DEBUG[2022-03-17 18:34:56.361][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-03-17 18:34:56.376][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2022-03-17 18:34:56.376][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2022-03-17 18:34:56.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:56.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:56.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:56.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:56.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:56.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:56.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:56.392][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:56.392][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:56.392][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.392][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:56.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:56.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.408][ef$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:56.408][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:56.408][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.408][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.423][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:56.423][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:56.423][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.423][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.423][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:56.423][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:56.423][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.423][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.423][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:56.423][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:56.423][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.423][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.423][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:56.423][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:56.423][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.423][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.423][ef$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:56.423][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:56.439][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.439][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.439][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:56.439][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:56.439][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.439][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.439][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:56.439][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:56.439][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.439][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.439][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:56.439][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:56.439][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.439][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.439][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:56.439][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:56.439][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.439][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:56.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:56.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:56.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:56.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:56.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:56.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:56.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:56.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:56.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:56.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:56.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:56.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:56.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:56.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:56.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:56.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:56.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:56.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:56.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:56.486][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:56.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:56.486][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:56.486][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:56.486][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.486][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:56.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:56.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.501][ef$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:56.501][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:56.501][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.501][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.501][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:56.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:56.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.517][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:56.517][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:56.517][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.517][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.517][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:56.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:56.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.533][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:56.533][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:56.533][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.533][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:56.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:56.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.548][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:56.548][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:56.548][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.548][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:56.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:56.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.564][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:56.564][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:56.564][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.564][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.564][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:56.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:56.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.580][ef$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:56.580][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:56.580][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.580][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.580][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:56.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:56.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.595][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:56.595][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:56.595][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.595][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:56.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:56.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.611][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:56.611][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:56.611][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.611][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.611][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:56.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:56.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.627][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:56.627][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:56.627][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.627][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.627][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:56.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:56.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.642][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:56.642][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:56.642][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.642][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.642][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:56.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:56.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:56.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:56.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:56.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:56.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:56.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:56.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:56.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:56.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:56.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:56.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:56.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:56.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:56.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:56.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:56.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:56.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:56.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:56.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:56.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:56.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:56.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:56.705][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:56.705][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:56.705][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.705][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:56.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:56.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.720][ef$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:56.720][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:56.720][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.720][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.720][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:34:56.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:34:56.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.736][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:56.736][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:56.736][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.736][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.736][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:56.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:56.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.736][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:56.751][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:56.751][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.751][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:56.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:56.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.751][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:56.767][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:56.767][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.767][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.767][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:56.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:56.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.767][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:56.783][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:56.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.783][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.783][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:56.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:56.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.783][ef$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:56.798][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:56.798][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.798][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.798][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:34:56.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:34:56.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.798][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:56.814][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:56.814][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.814][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:56.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:56.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.830][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:56.830][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:56.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.830][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.830][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:56.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:56.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.845][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:56.845][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:56.845][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.845][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.845][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:34:56.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:34:56.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.861][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:56.861][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:56.861][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.861][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.861][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:56.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:56.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:56.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:56.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:56.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:56.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:56.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:56.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:56.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:56.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:56.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:56.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:56.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:56.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:56.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:56.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:56.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:56.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:56.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:56.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:56.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:56.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:56.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:56.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:56.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:56.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:56.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:56.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:56.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:56.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:56.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:56.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:56.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:56.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:56.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:56.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:56.939][self$createEntryFromContent] Accession numbers: , 2528, 7799.
biodb.DEBUG[2022-03-17 18:34:56.939][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2022-03-17 18:34:56.939][function(conn, opt)] Entries: [4]: "NULL, <environment>, <environment>, <environment>"
biodb.INFO [2022-03-17 18:34:56.939][biodb::testThat]
biodb.INFO [2022-03-17 18:34:56.939][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2022-03-17 18:34:56.939][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:56.955][biodb::testThat]
biodb.INFO [2022-03-17 18:34:56.970][biodb::testThat]
biodb.INFO [2022-03-17 18:34:56.970][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2022-03-17 18:34:56.970][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:56.970][biodb::testThat]
biodb.INFO [2022-03-17 18:34:56.970][biodb::testThat]
biodb.INFO [2022-03-17 18:34:56.970][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2022-03-17 18:34:56.986][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:56.986][biodb::testThat]
biodb.DEBUG[2022-03-17 18:34:56.986][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1*&searchCategory=CHEBI ID&maximumResults=100&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:56.986][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:34:56.986][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:34:56.986][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1*&searchCategory=CHEBI%20ID&maximumResults=100&starsCategory=ALL".
biodb.TRACE[2022-03-17 18:34:57.642][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1*&searchCategory=CHEBI%20ID&maximumResults=100&starsCategory=ALL).
biodb.DEBUG[2022-03-17 18:34:58.408][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:34:58.423][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/abfdad4f2c265f1c152262cabd0cf864.content"
biodb.TRACE[2022-03-17 18:34:58.455][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/abfdad4f2c265f1c152262cabd0cf864.request"
biodb.TRACE[2022-03-17 18:34:58.486][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:58.486][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:58.486][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:58.486][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:58.486][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:58.486][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:58.486][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:58.486][ef$get] fields variable is a list.
biodb.INFO [2022-03-17 18:34:58.486][biodb::testThat]
biodb.INFO [2022-03-17 18:34:58.486][biodb::testThat] Running test function test.annotateMzValues (" annotateMzValues() works correctly. ").
biodb.INFO [2022-03-17 18:34:58.486][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:58.486][biodb::testThat]
biodb.ERROR[2022-03-17 18:34:58.501][conn$annotateMzValues] No column named "mz" was found inside data frame.
biodb.ERROR[2022-03-17 18:34:58.517][ef$checkIsDefined] Field(s) "foo" is/are not defined.
biodb.INFO [2022-03-17 18:34:58.533][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-03-17 18:34:58.533][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2022-03-17 18:34:58.533][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2022-03-17 18:34:58.533][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-03-17 18:34:58.533][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:58.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:58.533][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:58.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:58.533][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-03-17 18:34:58.548][biodb::testContext]
biodb.INFO [2022-03-17 18:34:58.548][biodb::testContext] ********************************************************************************
biodb.INFO [2022-03-17 18:34:58.548][biodb::testContext] Test context - Test conversions
biodb.INFO [2022-03-17 18:34:58.548][biodb::testContext] ********************************************************************************
biodb.INFO [2022-03-17 18:34:58.548][biodb::testContext]
biodb.INFO [2022-03-17 18:34:58.564][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.3.2.
biodb.DEBUG[2022-03-17 18:34:58.564][self$loadDefinitions] Load definitions from file "D:/biocbuild/bbs-3.15-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-03-17 18:34:58.564][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-03-17 18:34:58.564][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-03-17 18:34:58.564][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-03-17 18:34:58.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.564][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-03-17 18:34:58.564][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-03-17 18:34:58.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.564][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-03-17 18:34:58.580][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-03-17 18:34:58.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.580][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-03-17 18:34:58.580][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-03-17 18:34:58.580][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-03-17 18:34:58.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.580][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-03-17 18:34:58.580][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-03-17 18:34:58.580][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-03-17 18:34:58.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.580][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-03-17 18:34:58.580][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-03-17 18:34:58.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.595][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-03-17 18:34:58.595][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-03-17 18:34:58.595][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-03-17 18:34:58.595][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.595][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-03-17 18:34:58.595][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-03-17 18:34:58.595][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.595][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-03-17 18:34:58.595][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-03-17 18:34:58.595][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-03-17 18:34:58.595][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.595][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-03-17 18:34:58.595][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-03-17 18:34:58.611][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-03-17 18:34:58.611][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-03-17 18:34:58.611][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-03-17 18:34:58.611][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-03-17 18:34:58.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.611][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-03-17 18:34:58.611][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-03-17 18:34:58.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.611][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-03-17 18:34:58.611][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-03-17 18:34:58.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.611][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-03-17 18:34:58.611][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-03-17 18:34:58.626][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.626][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-03-17 18:34:58.626][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-03-17 18:34:58.626][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.626][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-03-17 18:34:58.626][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-03-17 18:34:58.626][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.626][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-03-17 18:34:58.626][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-03-17 18:34:58.626][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-03-17 18:34:58.626][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.642][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-03-17 18:34:58.642][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-03-17 18:34:58.642][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-03-17 18:34:58.642][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.642][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-03-17 18:34:58.642][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:58.642][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-03-17 18:34:58.642][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:58.642][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:34:58.642][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:58.642][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-03-17 18:34:58.642][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:58.642][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-03-17 18:34:58.642][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-03-17 18:34:58.642][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:34:58.658][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:58.658][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-03-17 18:34:58.658][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:34:58.658][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:58.658][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:58.658][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-03-17 18:34:58.658][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-03-17 18:34:58.658][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-03-17 18:34:58.658][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-03-17 18:34:58.658][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-03-17 18:34:58.658][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-03-17 18:34:58.658][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:58.658][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:58.658][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:34:58.658][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:58.658][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:58.658][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:34:58.658][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:58.658][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:34:58.658][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:34:58.658][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:58.658][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:58.658][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-03-17 18:34:58.673][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:58.673][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-03-17 18:34:58.673][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:58.673][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:34:58.673][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:58.673][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-03-17 18:34:58.673][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:58.673][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-03-17 18:34:58.673][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-03-17 18:34:58.673][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:34:58.673][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:58.673][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-03-17 18:34:58.673][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:34:58.673][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:58.673][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:58.673][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-03-17 18:34:58.673][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-03-17 18:34:58.673][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-03-17 18:34:58.673][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-03-17 18:34:58.673][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-03-17 18:34:58.673][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-03-17 18:34:58.673][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:58.689][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:58.689][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:34:58.689][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:58.689][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:58.689][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:34:58.689][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:58.689][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:34:58.689][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:34:58.689][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:58.689][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:58.689][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-03-17 18:34:58.689][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:58.689][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-03-17 18:34:58.689][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:58.689][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:34:58.689][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:58.689][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-03-17 18:34:58.689][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:58.705][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-03-17 18:34:58.705][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-03-17 18:34:58.705][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:34:58.705][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:58.705][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-03-17 18:34:58.705][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:34:58.705][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:58.705][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:58.705][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:58.705][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-03-17 18:34:58.705][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:58.705][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:58.705][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:34:58.705][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:58.705][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:58.705][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:34:58.705][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:58.705][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:34:58.705][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:34:58.720][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:58.720][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:58.720][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-03-17 18:34:58.720][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:58.720][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-03-17 18:34:58.720][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:58.720][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:34:58.720][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:58.720][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-03-17 18:34:58.720][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:58.720][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-03-17 18:34:58.720][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-03-17 18:34:58.720][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:34:58.720][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:58.720][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-03-17 18:34:58.720][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:34:58.720][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:58.736][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:58.736][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:58.736][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-03-17 18:34:58.736][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:58.736][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:58.736][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:34:58.736][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:58.736][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:58.736][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:34:58.736][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:58.736][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:34:58.736][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:34:58.736][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:58.736][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:58.736][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-03-17 18:34:58.736][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.736][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:58.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:58.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.751][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:58.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:58.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.751][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:58.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:58.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.751][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:58.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:58.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.751][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:58.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:58.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.767][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:58.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:58.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.767][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:58.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:58.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.767][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:58.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:58.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.783][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:58.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:58.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.783][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:58.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:58.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.783][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:58.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:58.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.783][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:58.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:58.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.798][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:58.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:58.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.798][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:58.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:58.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.798][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:58.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:58.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.798][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:58.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:58.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.814][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:58.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:58.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.814][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-03-17 18:34:58.814][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-03-17 18:34:58.814][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-03-17 18:34:58.814][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-03-17 18:34:58.814][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-03-17 18:34:58.814][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-03-17 18:34:58.814][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-03-17 18:34:58.814][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-03-17 18:34:58.814][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-03-17 18:34:58.830][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-03-17 18:34:58.830][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-03-17 18:34:58.830][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-03-17 18:34:58.830][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-03-17 18:34:58.830][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-03-17 18:34:58.830][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-03-17 18:34:58.830][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-03-17 18:34:58.830][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-03-17 18:34:58.830][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-03-17 18:34:58.830][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-03-17 18:34:58.830][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-03-17 18:34:58.830][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-03-17 18:34:58.830][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-03-17 18:34:58.830][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-03-17 18:34:58.845][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-03-17 18:34:58.845][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-03-17 18:34:58.845][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-03-17 18:34:58.845][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-03-17 18:34:58.845][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-03-17 18:34:58.845][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-03-17 18:34:58.845][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-03-17 18:34:58.845][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-03-17 18:34:58.845][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-03-17 18:34:58.845][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-03-17 18:34:58.845][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-03-17 18:34:58.845][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-03-17 18:34:58.845][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-03-17 18:34:58.845][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-03-17 18:34:58.861][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-03-17 18:34:58.861][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-03-17 18:34:58.861][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-03-17 18:34:58.861][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-03-17 18:34:58.861][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-03-17 18:34:58.861][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-03-17 18:34:58.861][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-03-17 18:34:58.861][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-03-17 18:34:58.861][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-03-17 18:34:58.861][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-03-17 18:34:58.861][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-03-17 18:34:58.861][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-03-17 18:34:58.861][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-03-17 18:34:58.876][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-03-17 18:34:58.876][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-03-17 18:34:58.876][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-03-17 18:34:58.876][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-03-17 18:34:58.876][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-03-17 18:34:58.876][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-03-17 18:34:58.876][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-03-17 18:34:58.876][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-03-17 18:34:58.876][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-03-17 18:34:58.876][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-03-17 18:34:58.876][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-03-17 18:34:58.876][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-03-17 18:34:58.876][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-03-17 18:34:58.876][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-03-17 18:34:58.892][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-03-17 18:34:58.892][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-03-17 18:34:58.892][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-03-17 18:34:58.892][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-03-17 18:34:58.892][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-03-17 18:34:58.892][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-03-17 18:34:58.892][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-03-17 18:34:58.892][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-03-17 18:34:58.892][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-03-17 18:34:58.892][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-03-17 18:34:58.892][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-03-17 18:34:58.892][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-03-17 18:34:58.892][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-03-17 18:34:58.908][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-03-17 18:34:58.908][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-03-17 18:34:58.908][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-03-17 18:34:58.908][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-03-17 18:34:58.908][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-03-17 18:34:58.908][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-03-17 18:34:58.908][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-03-17 18:34:58.908][initialize] This is biodb version 1.3.2.
biodb.DEBUG[2022-03-17 18:34:58.908][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-03-17 18:34:58.908][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:58.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:58.908][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.908][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:58.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:58.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:58.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:58.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.923][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:58.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:58.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:58.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:58.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.923][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:58.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:58.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:58.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:58.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.923][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:58.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:58.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:58.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:58.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.939][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:58.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:58.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:58.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:58.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.939][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:58.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:58.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:58.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:58.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.939][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:58.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:58.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:58.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:58.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.955][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:58.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:58.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:58.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:58.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.955][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:58.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:58.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:58.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:58.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.955][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:58.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:58.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:58.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:58.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.970][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:58.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:58.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:58.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:58.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.970][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:58.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:58.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:58.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:58.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.970][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:58.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:58.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:58.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:58.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.986][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:58.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:58.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:58.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:58.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.986][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:58.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:58.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:58.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:58.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:58.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:58.986][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:58.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:59.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:59.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:59.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:59.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:59.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:59.001][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:59.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:59.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:59.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:59.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:59.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:59.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:59.001][biodb$loadDefinitions] Load definitions from file "D:/biocbuild/bbs-3.15-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2022-03-17 18:34:59.001][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2022-03-17 18:34:59.001][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:59.001][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-03-17 18:34:59.001][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:59.017][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:34:59.017][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:59.017][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-03-17 18:34:59.017][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:59.017][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2022-03-17 18:34:59.017][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-03-17 18:34:59.017][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:34:59.017][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:59.017][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2022-03-17 18:34:59.017][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:34:59.017][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2022-03-17 18:34:59.017][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2022-03-17 18:34:59.017][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2022-03-17 18:34:59.017][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2022-03-17 18:34:59.017][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2022-03-17 18:34:59.017][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2022-03-17 18:34:59.017][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2022-03-17 18:34:59.017][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2022-03-17 18:34:59.017][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2022-03-17 18:34:59.017][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2022-03-17 18:34:59.017][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2022-03-17 18:34:59.017][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:59.017][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-03-17 18:34:59.017][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-03-17 18:34:59.017][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-03-17 18:34:59.017][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-03-17 18:34:59.017][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:59.017][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:59.017][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:34:59.033][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:59.033][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:59.033][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:34:59.033][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-03-17 18:34:59.033][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2022-03-17 18:34:59.033][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:34:59.033][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:34:59.033][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:59.033][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2022-03-17 18:34:59.033][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2022-03-17 18:34:59.033][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-03-17 18:34:59.033][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-03-17 18:34:59.033][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2022-03-17 18:34:59.033][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-03-17 18:34:59.048][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-03-17 18:34:59.048][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-03-17 18:34:59.048][super$initialize] Initialize connector chebi.
biodb.DEBUG[2022-03-17 18:34:59.048][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2022-03-17 18:34:59.048][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2022-03-17 18:34:59.048][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2022-03-17 18:34:59.048][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-03-17 18:34:59.048][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-03-17 18:34:59.048][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2022-03-17 18:34:59.048][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2022-03-17 18:34:59.048][biodb::testThat]
biodb.INFO [2022-03-17 18:34:59.048][biodb::testThat] Running test function test_chebi_convCasToChebi (" convCasToChebi() works. ").
biodb.INFO [2022-03-17 18:34:59.048][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:59.048][biodb::testThat]
biodb.DEBUG[2022-03-17 18:34:59.064][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2022-03-17 18:34:59.064][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-03-17 18:34:59.064][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2022-03-17 18:34:59.064][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:34:59.064][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2022-03-17 18:34:59.064][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:59.064][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-03-17 18:34:59.080][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2022-03-17 18:34:59.080][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:34:59.080][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2022-03-17 18:34:59.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:59.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:59.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:59.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:59.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:59.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:59.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:59.080][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:59.095][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-03-17 18:34:59.095][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2022-03-17 18:34:59.095][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:34:59.095][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2022-03-17 18:34:59.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:59.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:59.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:59.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:59.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:59.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:59.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:59.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:59.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:59.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:59.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:59.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:59.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:59.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:59.126][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:59.126][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-03-17 18:34:59.126][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2022-03-17 18:34:59.126][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:34:59.126][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2022-03-17 18:34:59.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:59.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:59.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:59.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:59.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:59.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:59.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:59.142][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:59.142][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-03-17 18:34:59.142][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2022-03-17 18:34:59.142][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:34:59.142][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2022-03-17 18:34:59.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:59.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:59.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:59.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:59.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:59.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:59.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:59.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:59.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:59.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:59.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:59.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:59.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:59.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:59.173][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:59.173][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-03-17 18:34:59.173][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2022-03-17 18:34:59.173][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:34:59.173][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2022-03-17 18:34:59.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:59.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:59.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:59.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:59.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:59.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:59.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:59.189][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:59.189][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-03-17 18:34:59.189][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2022-03-17 18:34:59.189][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:34:59.189][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2022-03-17 18:34:59.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:59.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:59.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:59.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:59.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:59.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:59.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:59.205][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:59.205][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-03-17 18:34:59.205][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70e3912746e7e39b39fbbffe6c90b502".
biodb.TRACE[2022-03-17 18:34:59.205][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:34:59.205][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70e3912746e7e39b39fbbffe6c90b502.content".
biodb.DEBUG[2022-03-17 18:34:59.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:59.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:59.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:59.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:59.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:59.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:59.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-03-17 18:34:59.220][biodb::testThat]
biodb.INFO [2022-03-17 18:34:59.220][biodb::testThat] Running test function test_chebi_convInchiToChebi (" convInchiToChebi() works. ").
biodb.INFO [2022-03-17 18:34:59.220][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:59.220][biodb::testThat]
biodb.DEBUG[2022-03-17 18:34:59.220][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI=1S/C15H24/c1-9(2)11-7-8-15(4)12-6-5-10(3)14(15)13(11)12/h5,9,11-14H,6-8H2,1-4H3/t11?,12?,13?,14?,15-/m0/s1&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:34:59.236][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:34:59.236][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:34:59.236][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI=1S/C15H24/c1-9(2)11-7-8-15(4)12-6-5-10(3)14(15)13(11)12/h5,9,11-14H,6-8H2,1-4H3/t11?,12?,13?,14?,15-/m0/s1&searchCategory=INCHI/INCHI%20KEY&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2022-03-17 18:34:59.783][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI=1S/C15H24/c1-9(2)11-7-8-15(4)12-6-5-10(3)14(15)13(11)12/h5,9,11-14H,6-8H2,1-4H3/t11?,12?,13?,14?,15-/m0/s1&searchCategory=INCHI/INCHI%20KEY&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2022-03-17 18:35:00.392][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:35:00.408][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3d0a94707e73df0ba810a5a87df958c6.content"
biodb.TRACE[2022-03-17 18:35:00.439][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3d0a94707e73df0ba810a5a87df958c6.request"
biodb.DEBUG[2022-03-17 18:35:00.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:35:00.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:00.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:00.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:00.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:00.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:00.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:00.455][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:35:00.455][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:35:00.455][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:35:00.455][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI/INCHI%20KEY&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2022-03-17 18:35:00.970][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI/INCHI%20KEY&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2022-03-17 18:35:01.564][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:35:01.579][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c23a09621704f6dcea62f90283def982.content"
biodb.TRACE[2022-03-17 18:35:01.611][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c23a09621704f6dcea62f90283def982.request"
biodb.DEBUG[2022-03-17 18:35:01.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:35:01.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:01.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:01.626][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:01.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:01.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-03-17 18:35:01.626][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-03-17 18:35:01.626][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2022-03-17 18:35:01.626][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2022-03-17 18:35:01.626][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-03-17 18:35:01.626][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:01.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:01.642][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:01.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:01.642][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-03-17 18:35:01.642][biodb::testContext]
biodb.INFO [2022-03-17 18:35:01.642][biodb::testContext] ********************************************************************************
biodb.INFO [2022-03-17 18:35:01.642][biodb::testContext] Test context - Test web services
biodb.INFO [2022-03-17 18:35:01.642][biodb::testContext] ********************************************************************************
biodb.INFO [2022-03-17 18:35:01.642][biodb::testContext]
biodb.INFO [2022-03-17 18:35:01.658][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.3.2.
biodb.DEBUG[2022-03-17 18:35:01.658][self$loadDefinitions] Load definitions from file "D:/biocbuild/bbs-3.15-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-03-17 18:35:01.658][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-03-17 18:35:01.658][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-03-17 18:35:01.658][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-03-17 18:35:01.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:01.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.658][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-03-17 18:35:01.658][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-03-17 18:35:01.673][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:01.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.673][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-03-17 18:35:01.673][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-03-17 18:35:01.673][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:01.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.673][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-03-17 18:35:01.673][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-03-17 18:35:01.673][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-03-17 18:35:01.673][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:01.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.673][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-03-17 18:35:01.673][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-03-17 18:35:01.673][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-03-17 18:35:01.673][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:01.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.689][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-03-17 18:35:01.689][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-03-17 18:35:01.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:01.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.689][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-03-17 18:35:01.689][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-03-17 18:35:01.689][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-03-17 18:35:01.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:01.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.689][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-03-17 18:35:01.689][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-03-17 18:35:01.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:01.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.689][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-03-17 18:35:01.689][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-03-17 18:35:01.705][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-03-17 18:35:01.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:01.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.705][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-03-17 18:35:01.705][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-03-17 18:35:01.705][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-03-17 18:35:01.705][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-03-17 18:35:01.705][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-03-17 18:35:01.705][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-03-17 18:35:01.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:01.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.705][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-03-17 18:35:01.705][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-03-17 18:35:01.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:01.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.705][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-03-17 18:35:01.705][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-03-17 18:35:01.720][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:01.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.720][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-03-17 18:35:01.720][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-03-17 18:35:01.720][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:01.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.720][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-03-17 18:35:01.720][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-03-17 18:35:01.720][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:01.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.720][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-03-17 18:35:01.720][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-03-17 18:35:01.720][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:01.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.720][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-03-17 18:35:01.736][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-03-17 18:35:01.736][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-03-17 18:35:01.736][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:01.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.736][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-03-17 18:35:01.736][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-03-17 18:35:01.736][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-03-17 18:35:01.736][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:01.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.736][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-03-17 18:35:01.736][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:35:01.736][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-03-17 18:35:01.736][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:01.736][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:35:01.736][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:01.751][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-03-17 18:35:01.751][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-03-17 18:35:01.751][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-03-17 18:35:01.751][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-03-17 18:35:01.751][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:35:01.751][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:01.751][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-03-17 18:35:01.751][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:35:01.751][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:35:01.751][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:01.751][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-03-17 18:35:01.751][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-03-17 18:35:01.751][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-03-17 18:35:01.751][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-03-17 18:35:01.751][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-03-17 18:35:01.751][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-03-17 18:35:01.751][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:35:01.751][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:35:01.751][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:35:01.751][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:35:01.751][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:35:01.751][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:35:01.767][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:35:01.767][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:35:01.767][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:35:01.767][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-03-17 18:35:01.767][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:35:01.767][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-03-17 18:35:01.767][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:35:01.767][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-03-17 18:35:01.767][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:01.767][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:35:01.767][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:01.767][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-03-17 18:35:01.767][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-03-17 18:35:01.767][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-03-17 18:35:01.767][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-03-17 18:35:01.767][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:35:01.767][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:01.767][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-03-17 18:35:01.783][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:35:01.783][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:35:01.783][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:01.783][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-03-17 18:35:01.783][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-03-17 18:35:01.783][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-03-17 18:35:01.783][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-03-17 18:35:01.783][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-03-17 18:35:01.783][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-03-17 18:35:01.783][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:35:01.783][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:35:01.783][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:35:01.783][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:35:01.783][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:35:01.783][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:35:01.783][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:35:01.783][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:35:01.783][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:35:01.783][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-03-17 18:35:01.783][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:35:01.783][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-03-17 18:35:01.798][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:01.798][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-03-17 18:35:01.798][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:01.798][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:35:01.798][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:01.798][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-03-17 18:35:01.798][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-03-17 18:35:01.798][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-03-17 18:35:01.798][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-03-17 18:35:01.798][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:35:01.798][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:35:01.798][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-03-17 18:35:01.798][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:35:01.798][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:35:01.798][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:01.798][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:35:01.798][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-03-17 18:35:01.798][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:35:01.798][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:35:01.814][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:35:01.814][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:35:01.814][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:35:01.814][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:35:01.814][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:35:01.814][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:35:01.814][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:35:01.814][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-03-17 18:35:01.814][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:35:01.814][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-03-17 18:35:01.814][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:01.814][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-03-17 18:35:01.814][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:01.814][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:35:01.814][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:01.814][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-03-17 18:35:01.814][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-03-17 18:35:01.814][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-03-17 18:35:01.829][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-03-17 18:35:01.829][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:35:01.829][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:35:01.829][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-03-17 18:35:01.829][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:35:01.829][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:35:01.829][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:01.829][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:35:01.829][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-03-17 18:35:01.829][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:35:01.829][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:35:01.829][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:35:01.829][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:35:01.845][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:35:01.845][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:35:01.845][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:35:01.845][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:35:01.845][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:35:01.845][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-03-17 18:35:01.845][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:35:01.845][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-03-17 18:35:01.845][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:01.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:01.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:01.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:01.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:01.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:01.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.861][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:01.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:01.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:01.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.861][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:01.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:01.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:01.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.861][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:01.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:01.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:01.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.861][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:01.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:01.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:01.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.876][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:01.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:01.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:01.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.876][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:01.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:01.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:01.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.876][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:01.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:01.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:01.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.876][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:01.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:01.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:01.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.876][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:01.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:01.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:01.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.892][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:01.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:01.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:01.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.892][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:01.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:01.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:01.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.892][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:01.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:01.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:01.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.892][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:01.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:01.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:01.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.908][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:01.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:01.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:01.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.908][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:01.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:01.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:01.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:01.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:01.908][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-03-17 18:35:01.908][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-03-17 18:35:01.908][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-03-17 18:35:01.908][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-03-17 18:35:01.908][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-03-17 18:35:01.923][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-03-17 18:35:01.923][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-03-17 18:35:01.923][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-03-17 18:35:01.923][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-03-17 18:35:01.923][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-03-17 18:35:01.923][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-03-17 18:35:01.923][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-03-17 18:35:01.923][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-03-17 18:35:01.923][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-03-17 18:35:01.923][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-03-17 18:35:01.923][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-03-17 18:35:01.923][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-03-17 18:35:01.923][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-03-17 18:35:01.939][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-03-17 18:35:01.939][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-03-17 18:35:01.939][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-03-17 18:35:01.939][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-03-17 18:35:01.939][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-03-17 18:35:01.939][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-03-17 18:35:01.939][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-03-17 18:35:01.939][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-03-17 18:35:01.939][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-03-17 18:35:01.939][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-03-17 18:35:01.939][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-03-17 18:35:01.939][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-03-17 18:35:01.939][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-03-17 18:35:01.939][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-03-17 18:35:01.954][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-03-17 18:35:01.954][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-03-17 18:35:01.954][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-03-17 18:35:01.954][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-03-17 18:35:01.954][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-03-17 18:35:01.954][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-03-17 18:35:01.954][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-03-17 18:35:01.954][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-03-17 18:35:01.954][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-03-17 18:35:01.954][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-03-17 18:35:01.954][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-03-17 18:35:01.954][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-03-17 18:35:01.954][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-03-17 18:35:01.970][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-03-17 18:35:01.970][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-03-17 18:35:01.970][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-03-17 18:35:01.970][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-03-17 18:35:01.970][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-03-17 18:35:01.970][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-03-17 18:35:01.970][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-03-17 18:35:01.970][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-03-17 18:35:01.970][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-03-17 18:35:01.970][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-03-17 18:35:01.970][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-03-17 18:35:01.970][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-03-17 18:35:01.970][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-03-17 18:35:01.970][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-03-17 18:35:01.986][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-03-17 18:35:01.986][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-03-17 18:35:01.986][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-03-17 18:35:01.986][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-03-17 18:35:01.986][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-03-17 18:35:01.986][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-03-17 18:35:01.986][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-03-17 18:35:01.986][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-03-17 18:35:01.986][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-03-17 18:35:01.986][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-03-17 18:35:01.986][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-03-17 18:35:01.986][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-03-17 18:35:01.986][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-03-17 18:35:02.001][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-03-17 18:35:02.001][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-03-17 18:35:02.001][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-03-17 18:35:02.001][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-03-17 18:35:02.001][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-03-17 18:35:02.001][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-03-17 18:35:02.001][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-03-17 18:35:02.001][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-03-17 18:35:02.001][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-03-17 18:35:02.001][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-03-17 18:35:02.001][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-03-17 18:35:02.001][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-03-17 18:35:02.001][initialize] This is biodb version 1.3.2.
biodb.DEBUG[2022-03-17 18:35:02.017][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-03-17 18:35:02.017][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:02.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:02.017][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:02.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:02.017][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:02.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:02.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:02.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:02.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:02.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:02.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:02.017][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:02.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:02.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:02.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:02.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:02.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:02.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:02.017][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:02.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:02.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:02.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:02.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:02.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:02.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:02.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:02.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:02.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:02.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:02.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:02.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:02.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:02.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:02.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:02.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:02.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:02.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:02.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:02.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:02.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:02.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:02.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:02.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:02.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:02.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:02.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:02.048][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:02.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:02.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:02.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:02.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:02.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:02.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:02.048][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:02.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:02.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:02.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:02.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:02.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:02.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:02.048][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:02.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:02.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:02.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:02.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:02.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:02.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:02.064][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:02.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:02.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:02.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:02.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:02.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:02.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:02.064][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:02.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:02.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:02.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:02.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:02.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:02.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:02.079][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:02.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:02.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:02.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:02.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:02.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:02.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:02.079][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:02.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:02.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:02.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:02.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:02.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:02.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:02.095][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:02.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:02.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:02.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:02.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:02.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:02.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:02.095][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:02.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:02.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:02.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:02.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:02.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:02.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:02.095][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:02.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:02.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:02.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:02.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:02.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:02.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:02.111][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:02.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:02.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:02.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:02.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:02.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:02.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:02.111][biodb$loadDefinitions] Load definitions from file "D:/biocbuild/bbs-3.15-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2022-03-17 18:35:02.111][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2022-03-17 18:35:02.111][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:35:02.111][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-03-17 18:35:02.111][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:02.111][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:35:02.111][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:02.111][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-03-17 18:35:02.111][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:02.126][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2022-03-17 18:35:02.126][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-03-17 18:35:02.126][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:35:02.126][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:02.126][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2022-03-17 18:35:02.126][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:35:02.126][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2022-03-17 18:35:02.126][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2022-03-17 18:35:02.126][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2022-03-17 18:35:02.126][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2022-03-17 18:35:02.126][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2022-03-17 18:35:02.126][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2022-03-17 18:35:02.126][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2022-03-17 18:35:02.126][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2022-03-17 18:35:02.126][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2022-03-17 18:35:02.126][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2022-03-17 18:35:02.126][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2022-03-17 18:35:02.126][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-03-17 18:35:02.126][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-03-17 18:35:02.126][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-03-17 18:35:02.126][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-03-17 18:35:02.126][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-03-17 18:35:02.126][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:35:02.126][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:35:02.126][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:35:02.126][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:35:02.126][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:35:02.126][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:35:02.126][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-03-17 18:35:02.126][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2022-03-17 18:35:02.126][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:35:02.126][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:35:02.142][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:02.142][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2022-03-17 18:35:02.142][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2022-03-17 18:35:02.142][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-03-17 18:35:02.142][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-03-17 18:35:02.142][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2022-03-17 18:35:02.142][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-03-17 18:35:02.142][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-03-17 18:35:02.142][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-03-17 18:35:02.142][super$initialize] Initialize connector chebi.
biodb.DEBUG[2022-03-17 18:35:02.142][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2022-03-17 18:35:02.142][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2022-03-17 18:35:02.142][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2022-03-17 18:35:02.158][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-03-17 18:35:02.158][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-03-17 18:35:02.158][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2022-03-17 18:35:02.158][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2022-03-17 18:35:02.158][biodb::testThat]
biodb.INFO [2022-03-17 18:35:02.158][biodb::testThat] Running test function test.chebi.wsGetLiteEntity (" Web service getLiteEntity works fine. ").
biodb.INFO [2022-03-17 18:35:02.158][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:35:02.158][biodb::testThat]
biodb.DEBUG[2022-03-17 18:35:02.158][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2022-03-17 18:35:02.158][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-03-17 18:35:02.158][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2022-03-17 18:35:02.158][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:35:02.173][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2022-03-17 18:35:02.173][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:35:02.173][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:35:02.173][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:35:02.173][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI%20ID&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2022-03-17 18:35:02.814][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI%20ID&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2022-03-17 18:35:03.376][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:35:03.392][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content"
biodb.TRACE[2022-03-17 18:35:03.439][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.request"
biodb.INFO [2022-03-17 18:35:03.470][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-03-17 18:35:03.470][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2022-03-17 18:35:03.470][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2022-03-17 18:35:03.470][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-03-17 18:35:03.470][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:03.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:03.470][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.470][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-03-17 18:35:03.486][biodb::testContext]
biodb.INFO [2022-03-17 18:35:03.486][biodb::testContext] ********************************************************************************
biodb.INFO [2022-03-17 18:35:03.486][biodb::testContext] Test context - Non regression tests
biodb.INFO [2022-03-17 18:35:03.486][biodb::testContext] ********************************************************************************
biodb.INFO [2022-03-17 18:35:03.486][biodb::testContext]
biodb.INFO [2022-03-17 18:35:03.486][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.3.2.
biodb.DEBUG[2022-03-17 18:35:03.486][self$loadDefinitions] Load definitions from file "D:/biocbuild/bbs-3.15-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-03-17 18:35:03.501][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-03-17 18:35:03.501][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-03-17 18:35:03.501][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-03-17 18:35:03.501][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.501][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-03-17 18:35:03.501][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-03-17 18:35:03.501][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.501][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-03-17 18:35:03.501][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-03-17 18:35:03.501][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.517][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-03-17 18:35:03.517][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-03-17 18:35:03.517][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-03-17 18:35:03.517][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.517][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-03-17 18:35:03.517][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-03-17 18:35:03.517][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-03-17 18:35:03.517][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.517][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-03-17 18:35:03.517][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-03-17 18:35:03.517][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.517][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-03-17 18:35:03.517][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-03-17 18:35:03.533][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-03-17 18:35:03.533][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.533][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-03-17 18:35:03.533][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-03-17 18:35:03.533][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.533][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-03-17 18:35:03.533][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-03-17 18:35:03.533][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-03-17 18:35:03.533][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.533][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-03-17 18:35:03.533][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-03-17 18:35:03.533][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-03-17 18:35:03.533][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-03-17 18:35:03.548][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-03-17 18:35:03.548][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-03-17 18:35:03.548][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.548][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-03-17 18:35:03.548][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-03-17 18:35:03.548][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.548][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-03-17 18:35:03.548][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-03-17 18:35:03.548][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.548][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-03-17 18:35:03.548][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-03-17 18:35:03.548][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.564][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-03-17 18:35:03.564][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-03-17 18:35:03.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.564][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-03-17 18:35:03.564][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-03-17 18:35:03.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.564][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-03-17 18:35:03.564][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-03-17 18:35:03.564][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-03-17 18:35:03.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.564][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-03-17 18:35:03.579][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-03-17 18:35:03.579][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-03-17 18:35:03.579][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.579][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-03-17 18:35:03.579][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:35:03.579][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-03-17 18:35:03.579][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:03.579][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:35:03.579][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:03.579][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-03-17 18:35:03.579][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-03-17 18:35:03.579][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-03-17 18:35:03.579][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-03-17 18:35:03.579][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:35:03.579][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:03.579][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-03-17 18:35:03.595][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:35:03.595][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:35:03.595][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:03.595][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-03-17 18:35:03.595][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-03-17 18:35:03.595][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-03-17 18:35:03.595][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-03-17 18:35:03.595][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-03-17 18:35:03.595][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-03-17 18:35:03.595][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:35:03.595][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:35:03.595][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:35:03.595][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:35:03.595][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:35:03.595][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:35:03.595][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:35:03.595][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:35:03.595][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:35:03.595][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-03-17 18:35:03.595][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:35:03.595][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-03-17 18:35:03.611][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:35:03.611][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-03-17 18:35:03.611][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:03.611][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:35:03.611][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:03.611][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-03-17 18:35:03.611][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-03-17 18:35:03.611][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-03-17 18:35:03.611][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-03-17 18:35:03.611][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:35:03.611][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:03.611][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-03-17 18:35:03.611][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:35:03.611][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:35:03.611][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:03.611][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-03-17 18:35:03.611][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-03-17 18:35:03.611][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-03-17 18:35:03.611][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-03-17 18:35:03.611][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-03-17 18:35:03.611][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-03-17 18:35:03.611][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:35:03.626][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:35:03.626][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:35:03.626][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:35:03.626][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:35:03.626][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:35:03.626][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:35:03.626][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:35:03.626][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:35:03.626][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-03-17 18:35:03.626][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:35:03.626][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-03-17 18:35:03.626][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:03.626][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-03-17 18:35:03.626][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:03.626][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:35:03.626][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:03.626][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-03-17 18:35:03.626][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-03-17 18:35:03.642][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-03-17 18:35:03.642][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-03-17 18:35:03.642][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:35:03.642][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:35:03.642][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-03-17 18:35:03.642][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:35:03.642][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:35:03.642][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:03.642][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:35:03.642][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-03-17 18:35:03.642][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:35:03.642][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:35:03.642][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:35:03.642][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:35:03.642][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:35:03.642][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:35:03.642][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:35:03.642][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:35:03.642][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:35:03.658][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-03-17 18:35:03.658][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:35:03.658][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-03-17 18:35:03.658][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:03.658][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-03-17 18:35:03.658][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:03.658][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:35:03.658][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:03.658][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-03-17 18:35:03.658][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-03-17 18:35:03.658][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-03-17 18:35:03.658][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-03-17 18:35:03.658][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:35:03.658][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:35:03.658][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-03-17 18:35:03.658][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:35:03.658][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:35:03.673][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:03.673][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:35:03.673][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-03-17 18:35:03.673][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:35:03.673][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:35:03.673][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:35:03.673][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:35:03.673][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:35:03.673][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:35:03.673][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:35:03.673][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:35:03.673][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:35:03.673][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-03-17 18:35:03.673][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:35:03.673][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-03-17 18:35:03.673][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.673][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.704][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.704][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.704][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.704][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.720][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.720][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.720][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.736][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.736][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.736][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.736][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.751][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.751][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-03-17 18:35:03.751][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-03-17 18:35:03.751][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-03-17 18:35:03.751][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-03-17 18:35:03.751][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-03-17 18:35:03.751][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-03-17 18:35:03.751][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-03-17 18:35:03.751][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-03-17 18:35:03.767][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-03-17 18:35:03.767][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-03-17 18:35:03.767][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-03-17 18:35:03.767][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-03-17 18:35:03.767][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-03-17 18:35:03.767][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-03-17 18:35:03.767][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-03-17 18:35:03.767][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-03-17 18:35:03.767][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-03-17 18:35:03.767][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-03-17 18:35:03.767][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-03-17 18:35:03.767][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-03-17 18:35:03.767][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-03-17 18:35:03.767][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-03-17 18:35:03.783][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-03-17 18:35:03.783][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-03-17 18:35:03.783][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-03-17 18:35:03.783][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-03-17 18:35:03.783][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-03-17 18:35:03.783][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-03-17 18:35:03.783][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-03-17 18:35:03.783][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-03-17 18:35:03.783][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-03-17 18:35:03.783][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-03-17 18:35:03.783][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-03-17 18:35:03.783][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-03-17 18:35:03.783][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-03-17 18:35:03.783][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-03-17 18:35:03.798][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-03-17 18:35:03.798][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-03-17 18:35:03.798][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-03-17 18:35:03.798][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-03-17 18:35:03.798][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-03-17 18:35:03.798][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-03-17 18:35:03.798][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-03-17 18:35:03.798][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-03-17 18:35:03.798][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-03-17 18:35:03.798][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-03-17 18:35:03.798][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-03-17 18:35:03.798][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-03-17 18:35:03.798][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-03-17 18:35:03.814][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-03-17 18:35:03.814][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-03-17 18:35:03.814][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-03-17 18:35:03.814][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-03-17 18:35:03.814][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-03-17 18:35:03.814][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-03-17 18:35:03.814][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-03-17 18:35:03.814][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-03-17 18:35:03.814][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-03-17 18:35:03.814][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-03-17 18:35:03.814][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-03-17 18:35:03.814][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-03-17 18:35:03.814][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-03-17 18:35:03.814][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-03-17 18:35:03.829][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-03-17 18:35:03.829][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-03-17 18:35:03.829][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-03-17 18:35:03.829][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-03-17 18:35:03.829][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-03-17 18:35:03.829][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-03-17 18:35:03.829][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-03-17 18:35:03.829][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-03-17 18:35:03.829][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-03-17 18:35:03.829][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-03-17 18:35:03.829][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-03-17 18:35:03.829][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-03-17 18:35:03.829][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-03-17 18:35:03.845][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-03-17 18:35:03.845][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-03-17 18:35:03.845][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-03-17 18:35:03.845][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-03-17 18:35:03.845][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-03-17 18:35:03.845][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-03-17 18:35:03.845][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-03-17 18:35:03.845][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-03-17 18:35:03.845][initialize] This is biodb version 1.3.2.
biodb.DEBUG[2022-03-17 18:35:03.845][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-03-17 18:35:03.845][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.845][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:03.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:03.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.861][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:03.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:03.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.861][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:03.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:03.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.876][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:03.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:03.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.876][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:03.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:03.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.876][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:03.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:03.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.892][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:03.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:03.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.892][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:03.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:03.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.892][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:03.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:03.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.908][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:03.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:03.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.908][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:03.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:03.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.908][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:03.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:03.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.923][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:03.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:03.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.923][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:03.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:03.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.923][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:03.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:03.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.939][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:03.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:03.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.939][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:35:03.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:03.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:03.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:03.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:03.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:03.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:03.939][biodb$loadDefinitions] Load definitions from file "D:/biocbuild/bbs-3.15-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2022-03-17 18:35:03.939][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2022-03-17 18:35:03.954][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:35:03.954][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-03-17 18:35:03.954][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:03.954][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:35:03.954][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:03.954][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-03-17 18:35:03.954][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:03.954][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2022-03-17 18:35:03.954][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-03-17 18:35:03.954][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:35:03.954][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:03.954][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2022-03-17 18:35:03.954][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:35:03.954][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2022-03-17 18:35:03.954][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2022-03-17 18:35:03.954][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2022-03-17 18:35:03.954][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2022-03-17 18:35:03.954][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2022-03-17 18:35:03.954][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2022-03-17 18:35:03.954][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2022-03-17 18:35:03.954][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2022-03-17 18:35:03.954][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2022-03-17 18:35:03.954][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2022-03-17 18:35:03.954][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2022-03-17 18:35:03.954][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-03-17 18:35:03.954][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-03-17 18:35:03.954][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-03-17 18:35:03.954][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-03-17 18:35:03.954][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-03-17 18:35:03.954][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:35:03.970][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:35:03.970][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:35:03.970][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:35:03.970][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:35:03.970][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:35:03.970][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-03-17 18:35:03.970][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2022-03-17 18:35:03.970][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:35:03.970][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:35:03.970][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-03-17 18:35:03.970][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2022-03-17 18:35:03.970][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2022-03-17 18:35:03.970][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-03-17 18:35:03.970][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-03-17 18:35:03.986][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2022-03-17 18:35:03.986][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-03-17 18:35:03.986][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-03-17 18:35:03.986][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-03-17 18:35:03.986][super$initialize] Initialize connector chebi.
biodb.DEBUG[2022-03-17 18:35:03.986][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2022-03-17 18:35:03.986][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2022-03-17 18:35:03.986][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2022-03-17 18:35:03.986][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-03-17 18:35:03.986][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-03-17 18:35:03.986][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2022-03-17 18:35:03.986][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2022-03-17 18:35:03.986][biodb::testThat]
biodb.INFO [2022-03-17 18:35:04.001][biodb::testThat] Running test function test.chebi.encoding.issue.in.xml (" ChEBI encoding issue in XML is handled. ").
biodb.INFO [2022-03-17 18:35:04.001][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:35:04.001][biodb::testThat]
biodb.DEBUG[2022-03-17 18:35:04.001][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2022-03-17 18:35:04.001][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-03-17 18:35:04.001][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2022-03-17 18:35:04.001][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:35:04.001][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2022-03-17 18:35:04.001][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-03-17 18:35:04.017][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-03-17 18:35:04.017][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2022-03-17 18:35:04.017][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:35:04.017][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.DEBUG[2022-03-17 18:35:04.017][private$loadEntries] Creating entries from ids [1]: "2571".
biodb.DEBUG[2022-03-17 18:35:04.017][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-03-17 18:35:04.017][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2571".
biodb.TRACE[2022-03-17 18:35:04.017][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-03-17 18:35:04.017][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-03-17 18:35:04.017][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-03-17 18:35:04.017][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-03-17 18:35:04.017][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-03-17 18:35:04.033][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-03-17 18:35:04.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:35:04.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:04.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:04.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:04.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:04.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:04.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:35:04.033][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2571".
biodb.DEBUG[2022-03-17 18:35:04.033][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-03-17 18:35:04.033][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-03-17 18:35:04.048][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2571".
biodb.TRACE[2022-03-17 18:35:04.533][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2571).
biodb.DEBUG[2022-03-17 18:35:05.361][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-03-17 18:35:05.376][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52df2611aa7f9f4c531cce8ac62e2fa0.content"
biodb.TRACE[2022-03-17 18:35:05.423][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52df2611aa7f9f4c531cce8ac62e2fa0.request"
biodb.TRACE[2022-03-17 18:35:05.454][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2571.xml"
biodb.DEBUG[2022-03-17 18:35:05.470][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-03-17 18:35:05.486][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-03-17 18:35:05.486][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-03-17 18:35:05.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:35:05.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:05.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:05.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:05.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:05.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:05.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:35:05.501][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:35:05.501][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:35:05.501][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:35:05.501][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:35:05.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:35:05.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:35:05.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:35:05.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:35:05.517][ef$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:35:05.517][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:35:05.517][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:35:05.517][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:35:05.517][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-03-17 18:35:05.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-03-17 18:35:05.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:35:05.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:35:05.533][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:35:05.533][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:35:05.533][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:35:05.533][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:35:05.533][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:35:05.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:35:05.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:35:05.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:35:05.548][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:35:05.548][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:35:05.548][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:35:05.548][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:35:05.548][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:35:05.548][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:35:05.548][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:35:05.548][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:35:05.548][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:35:05.564][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:35:05.564][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:35:05.564][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:35:05.564][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:35:05.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:35:05.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:35:05.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:35:05.579][ef$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:35:05.579][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:35:05.579][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:35:05.579][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:35:05.579][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-03-17 18:35:05.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-03-17 18:35:05.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:35:05.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:35:05.595][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:35:05.595][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:35:05.595][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:35:05.595][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:35:05.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:35:05.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:35:05.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:35:05.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:35:05.611][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:35:05.611][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:35:05.611][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:35:05.611][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:35:05.611][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:35:05.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:35:05.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:35:05.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:35:05.626][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:35:05.626][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:35:05.626][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:35:05.626][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:35:05.626][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-03-17 18:35:05.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-03-17 18:35:05.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:35:05.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:35:05.642][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:35:05.642][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:35:05.642][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:35:05.642][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:35:05.642][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:35:05.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:35:05.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:35:05.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:35:05.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:35:05.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:35:05.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:35:05.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:35:05.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:35:05.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:35:05.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:35:05.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:35:05.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:35:05.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:35:05.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:35:05.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:35:05.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:35:05.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:35:05.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:35:05.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:35:05.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:35:05.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:35:05.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:35:05.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:35:05.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:35:05.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:35:05.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:35:05.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:35:05.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:35:05.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:35:05.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:35:05.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:35:05.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:35:05.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:35:05.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:35:05.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:35:05.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:35:05.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:35:05.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:35:05.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:35:05.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:35:05.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:35:05.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:35:05.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:35:05.689][self$createEntryFromContent] Accession numbers: 2571.
biodb.INFO [2022-03-17 18:35:05.689][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-03-17 18:35:05.704][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2022-03-17 18:35:05.704][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2022-03-17 18:35:05.704][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-03-17 18:35:05.704][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:35:05.704][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:35:05.704][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:35:05.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:35:05.704][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:35:05.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 355 ]
>
> proc.time()
user system elapsed
23.20 1.12 60.73
biodbChebi.Rcheck/biodbChebi-Ex.timings
| name | user | system | elapsed | |
| ChebiConn | 3.54 | 1.29 | 5.76 | |
| ChebiEntry | 0.42 | 0.00 | 0.42 | |