Back to Multiple platform build/check report for BioC 3.15
[A]BCDEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2022-03-18 11:06:55 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for animalcules on riesling1


To the developers/maintainers of the animalcules package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/animalcules.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 53/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
animalcules 1.11.1  (landing page)
Yue Zhao
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/animalcules
git_branch: master
git_last_commit: 66921d7
git_last_commit_date: 2022-01-14 11:36:35 -0400 (Fri, 14 Jan 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: animalcules
Version: 1.11.1
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL animalcules
StartedAt: 2022-03-17 16:00:29 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 16:01:31 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 62.0 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL animalcules
###
##############################################################################
##############################################################################


* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'animalcules' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'SummarizedExperiment::colnames' by 'biomformat::colnames' when loading 'animalcules'
Warning: replacing previous import 'SummarizedExperiment::rownames' by 'biomformat::rownames' when loading 'animalcules'
** help
*** installing help indices
  converting help for package 'animalcules'
    finding HTML links ... done
    alpha_div_boxplot                       html  
    alpha_div_test                          html  
    animalcules-package                     html  
    counts_to_logcpm                        html  
    counts_to_relabu                        html  
    df_char_to_factor                       html  
    differential_abundance                  html  
    dimred_pca                              html  
    dimred_pcoa                             html  
    dimred_tsne                             html  
    dimred_umap                             html  
    diversities                             html  
    diversities_help                        html  
    diversity_beta_boxplot                  html  
    diversity_beta_heatmap                  html  
    diversity_beta_test                     html  
    do_alpha_div_test                       html  
    filter_categorize                       html  
    filter_summary_bar_density              html  
    filter_summary_pie_box                  html  
    find_biomarker                          html  
    find_taxon_mat                          html  
    find_taxonomy                           html  
    find_taxonomy_300                       html  
    gini_simpson                            html  
    grep_tid                                html  
    inverse_simpson                         html  
    is_categorical                          html  
    is_integer0                             html  
    is_integer1                             html  
    mae_pick_organisms                      html  
    mae_pick_samples                        html  
    pct2str                                 html  
    percent                                 html  
    read_pathoscope_data                    html  
    relabu_barplot                          html  
    relabu_boxplot                          html  
    relabu_heatmap                          html  
    run_animalcules                         html  
    shannon                                 html  
    simpson_index                           html  
    upsample_counts                         html  
    write_to_biom                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'SummarizedExperiment::colnames' by 'biomformat::colnames' when loading 'animalcules'
Warning: replacing previous import 'SummarizedExperiment::rownames' by 'biomformat::rownames' when loading 'animalcules'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'SummarizedExperiment::colnames' by 'biomformat::colnames' when loading 'animalcules'
Warning: replacing previous import 'SummarizedExperiment::rownames' by 'biomformat::rownames' when loading 'animalcules'
** testing if installed package keeps a record of temporary installation path
* DONE (animalcules)
Making 'packages.html' ... done