Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-03-18 11:06:54 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for altcdfenvs on riesling1


To the developers/maintainers of the altcdfenvs package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/altcdfenvs.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 45/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
altcdfenvs 2.57.0  (landing page)
Laurent Gautier
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/altcdfenvs
git_branch: master
git_last_commit: c080456
git_last_commit_date: 2021-10-26 11:46:44 -0400 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: altcdfenvs
Version: 2.57.0
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL altcdfenvs
StartedAt: 2022-03-17 15:37:41 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 15:38:56 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 74.4 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL altcdfenvs
###
##############################################################################
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'altcdfenvs' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
NOTE: arguments in definition for validity method for class 'AffyProbesMatch' changed from (obj) to (object)
in method for 'toHypergraph' with signature '"CdfEnvAffy"': no definition for class "CdfEnvAffy"
** help
*** installing help indices
  converting help for package 'altcdfenvs'
    finding HTML links ... done
    AffyProbesMatch-class                   html  
    CdfEnvAffy-class                        html  
    appendCdfEnvAffy                        html  
    buildCdfEnv.biostrings                  html  
    cdfenv                                  html  
    cdfenvEx                                html  
    copyCdfEnvAffy                          html  
    countduplicated                         html  
    geneNames                               html  
    getxy.probeseq                          html  
    index2xy                                html  
    indexProbes.CdfEnvAffy                  html  
    matchAffyProbes                         html  
    plot.CdfEnvAffy                         html  
    removeIndex                             html  
    toHypergraph                            html  
    unique.CdfEnvAffy                       html  
    utils.FASTA                             html  
    validAffyBatch                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (altcdfenvs)
Making 'packages.html' ... done