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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL XCIR
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'XCIR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'XCIR'
    finding HTML links ... done
    BetaConversion                          html  
    XCIR-package                            html  
    addAnno                                 html  
    annotateX                               html  
    annotates_snps                          html  
    betaBinomXI                             html  
    consensusXCI                            html  
    getGenicDP                              html  
    getXCIstate                             html  
    mart_genes                              html  
    plotQC                                  html  
    readRNASNPs                             html  
    readVCF4                                html  
    readXCI                                 html  
    readXVcf                                html  
    sample_clean                            html  
    xci_calls                               html  
    xci_qc                                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (XCIR)
Making 'packages.html' ... done