############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r XCIR -R && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data XCIR ### ############################################################################## ############################################################################## * checking for file 'XCIR/DESCRIPTION' ... OK * preparing 'XCIR': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'xcir_intro.Rmd' using knitr Fetching genes for hg38 Fetching genes for hg38 Warning in getGenicDP(annoX, highest_expr = TRUE) : There are no 'sex' column in the dataset. If not all subjects are female, remove them or add a 'sex' column and run again. Quitting from lines 146-147 (xcir_intro.Rmd) Error: processing vignette 'xcir_intro.Rmd' failed with diagnostics: object 'pvalue' not found --- failed re-building 'xcir_intro.Rmd' SUMMARY: processing the following file failed: 'xcir_intro.Rmd' Error: Vignette re-building failed. Execution halted