############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf VariantTools.buildbin-libdir && mkdir VariantTools.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=VariantTools.buildbin-libdir VariantTools_1.37.1.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'VariantTools' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'VariantTools' finding HTML links ... done FilterConstructors html annnotateWithControlDepth html callGenotypes html callSampleSpecificVariants html callVariants html callWildtype html concordance html extractCoverageForPositions html matchVariants html pileupVariants html postFilterVariants html qaVariants html tallyVariants html finding level-2 HTML links ... done variantGR2Vcf html vignette html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'VariantTools' as VariantTools_1.37.1.zip * DONE (VariantTools)