############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL ToxicoGx ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'ToxicoGx' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ToxicoGx' finding HTML links ... done HCC_sig html TGGATESsmall html ToxicoSet-class html ToxicoSet html ToxicoSig html annotation-set html annotation html availableTSets html checkTSetStructure html computeAUC html computeICn html computeLimmaDiffExpr-ToxicoSet-method html computeLimmaDiffExpr html curation-set html curation html datasetType-set html datasetType html dim-ToxicoSet-method html downloadTSet html drugGeneResponseCurve html drugInfo-set html drugInfo html drugNames-set html drugNames html drugPerturbationSig html drugTimeResponseCurve html geneDrugPerturbation html logLogisticRegression html mDataNames-ToxicoSet-method html name-ToxicoSet-method html sensitivityRaw-set html sensitivityRaw html sensitivitySlot-set html sensitivitySlot html show-ToxicoSet-method html show-ToxicoSig-method html showSigAnnot html sub-ToxicoSet-ANY-ANY-ANY-method html subsetTo html summarizeMolecularProfiles html summarizeSensitivityProfiles html updateCellId html updateDrugId html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ToxicoGx) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'PROPS' is missing or broken done