############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf SamSPECTRAL.buildbin-libdir && mkdir SamSPECTRAL.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=SamSPECTRAL.buildbin-libdir SamSPECTRAL_1.49.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'SamSPECTRAL' ... ** using staged installation ** libs "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c Rinit.c -o Rinit.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c conductance_computation.c -o conductance_computation.o conductance_computation.c: In function 'conductance_computation': conductance_computation.c:155:17: warning: variable 'repres_ind' set but not used [-Wunused-but-set-variable] int *density, *repres_ind; ^~~~~~~~~~ conductance_computation.c:155:7: warning: variable 'density' set but not used [-Wunused-but-set-variable] int *density, *repres_ind; ^~~~~~~ "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c maximum_of_rows.c -o maximum_of_rows.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o SamSPECTRAL.dll tmp.def Rinit.o conductance_computation.o maximum_of_rows.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR installing to D:/biocbuild/bbs-3.15-bioc/meat/SamSPECTRAL.buildbin-libdir/00LOCK-SamSPECTRAL/00new/SamSPECTRAL/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'SamSPECTRAL' finding HTML links ... done Building_Communities html Civilized_Spectral_Clustering html Conductance_Calculation html Connecting html SamSPECTRAL-package html SamSPECTRAL html check.SamSPECTRAL.input html eigen.values.10 html eigen.values.1000 html kneepointDetection html small html stmFSC html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'SamSPECTRAL' as SamSPECTRAL_1.49.0.zip * DONE (SamSPECTRAL)