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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL SCOPE
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'SCOPE' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SCOPE'
    finding HTML links ... done
    QCmetric.scopeDemo                      html  
    Y_sim                                   html  
    coverageObj.scopeDemo                   html  
    get_bam_bed                             html  
    get_coverage_scDNA                      html  
    get_gc                                  html  
    get_gini                                html  
    get_mapp                                html  
    get_samp_QC                             html  
    iCN_sim                                 html  
    initialize_ploidy                       html  
    initialize_ploidy_group                 html  
    normObj.scopeDemo                       html  
    normalize_codex2_ns_noK                 html  
    normalize_scope                         html  
    normalize_scope_foreach                 html  
    normalize_scope_group                   html  
    perform_qc                              html  
    plot_EM_fit                             html  
    plot_iCN                                html  
    ref.scopeDemo                           html  
    ref_sim                                 html  
    segment_CBScs                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SCOPE)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'PureCN' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'tLOH' is missing or broken
 done