############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL Rtpca ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'Rtpca' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'Rtpca' finding HTML links ... done CommonFeatures-tpcaResult-method html ComplexAnnotation-tpcaResult-method html ComplexBackgroundDistributionList-tpcaResult-method html ComplexRocTable-tpcaResult-method html ContrastCondName-tpcaResult-method html ContrastDistMat-tpcaResult-method html ContrastList-tpcaResult-method html CtrlCondName-tpcaResult-method html DistMat-tpcaResult-method html DistMethod-tpcaResult-method html ObjList-tpcaResult-method html PPiAnnotation-tpcaResult-method html PPiRocTable-tpcaResult-method html PPiRocTableAnno-tpcaResult-method html SetCommonFeatures-tpcaResult-method html SetComplexAnnotation-tpcaResult-method html SetComplexBackgroundDistributionList-tpcaResult-method html SetComplexRocTable-tpcaResult-method html SetContrastCondName-tpcaResult-method html SetContrastDistMat-tpcaResult-method html SetCtrlCondName-tpcaResult-method html SetDiffTpcaResultTable-tpcaResult-method html SetDistMat-tpcaResult-method html SetDistMethod-tpcaResult-method html SetPPiRocTable-tpcaResult-method html SetPPiRocTableAnno-tpcaResult-method html SetSummaryMethod-tpcaResult-method html SetTpcaResultTable-tpcaResult-method html SummaryMethod-tpcaResult-method html createDistMat html diffTpcaResultTable-tpcaResult-method html ori_et_al_complex_ppis html ori_et_al_complexes_df html plotComplexRoc html plotDiffTpcaVolcano html plotPPiProfiles html plotPPiRoc html plotTpcaVolcano html runDiffTPCA html runTPCA html string_ppi_df html tpcaResult-class html tpcaResultTable-tpcaResult-method html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rtpca) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'vissE' is missing or broken done