############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data PSICQUIC ### ############################################################################## ############################################################################## * checking for file ‘PSICQUIC/DESCRIPTION’ ... OK * preparing ‘PSICQUIC’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘PSICQUIC.Rnw’ using Sweave Loading required package: IRanges Loading required package: BiocGenerics Attaching package: ‘BiocGenerics’ The following objects are masked from ‘package:stats’: IQR, mad, sd, var, xtabs The following objects are masked from ‘package:base’: Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which.max, which.min Loading required package: S4Vectors Loading required package: stats4 Attaching package: ‘S4Vectors’ The following objects are masked from ‘package:base’: I, expand.grid, unname Loading required package: biomaRt Loading required package: httr Loading required package: plyr Attaching package: ‘plyr’ The following object is masked from ‘package:IRanges’: desc The following object is masked from ‘package:S4Vectors’: rename Warning: replacing previous import ‘IRanges::desc’ by ‘plyr::desc’ when loading ‘PSICQUIC’ Warning: Package 'PSICQUIC' is deprecated and will be removed from Bioconductor version 3.16 checking for biomart access... does 'http://www.ensembl.org' respond? creating ensembl mart Warning: Ensembl will soon enforce the use of https. Ensure the 'host' argument includes "https://" hsapiens_gene_ensembl dataset provided? Ensembl site unresponsive, trying asia mirror Error: processing vignette 'PSICQUIC.Rnw' failed with diagnostics: chunk 8 (label = addGeneNames) Error in (function (cond) : error in evaluating the argument 'table' in selecting a method for function '%in%': Gateway Timeout (HTTP 504). --- failed re-building ‘PSICQUIC.Rnw’ SUMMARY: processing the following file failed: ‘PSICQUIC.Rnw’ Error: Vignette re-building failed. Execution halted