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### Running command:
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###   rm -rf NxtIRFcore.buildbin-libdir && mkdir NxtIRFcore.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=NxtIRFcore.buildbin-libdir NxtIRFcore_1.1.1.tar.gz
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* installing *source* package 'NxtIRFcore' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c BAM2blocks.cpp -o BAM2blocks.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c FastaReader.cpp -o FastaReader.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c FragmentBlocks.cpp -o FragmentBlocks.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c GZTools.cpp -o GZTools.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c IRFinder.cpp -o IRFinder.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c ReadBlockProcessor.cpp -o ReadBlockProcessor.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c ReadBlockProcessor_CoverageBlocks.cpp -o ReadBlockProcessor_CoverageBlocks.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c covTools.cpp -o covTools.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o NxtIRFcore.dll tmp.def BAM2blocks.o FastaReader.o FragmentBlocks.o GZTools.o IRFinder.o RcppExports.o ReadBlockProcessor.o ReadBlockProcessor_CoverageBlocks.o covTools.o -fopenmp -DRNXTIRF -LD:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/meat/NxtIRFcore.buildbin-libdir/00LOCK-NxtIRFcore/00new/NxtIRFcore/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'NxtIRFcore'
    finding HTML links ... done
    ASE-methods                             html  
    BuildReference                          html  
    CollateData                             html  
    CoordToGR                               html  
    Coverage                                html  
    Find_Samples                            html  
    IRFinder                                html  
    IsCOV                                   html  
    MakeSE                                  html  
    Mappability-methods                     html  
    NxtFilter-class                         html  
    NxtIRFcore-package                      html  
    NxtSE-class                             html  
    finding level-2 HTML links ... done

    Plot_Coverage                           html  
    Run_NxtIRF_Filters                      html  
    STAR-methods                            html  
    example-NxtIRF-data                     html  
    make_plot_data                          html  
    theme_white                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'NxtIRFcore' as NxtIRFcore_1.1.1.zip
* DONE (NxtIRFcore)