############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r Herper -R && F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data Herper ### ############################################################################## ############################################################################## * checking for file 'Herper/DESCRIPTION' ... OK * preparing 'Herper': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'Herper.Rmd' using rmarkdown Loading required package: reticulate * Installing Miniconda -- please wait a moment ... * Downloading "https://repo.anaconda.com/miniconda/Miniconda3-latest-Windows-x86_64.exe" ... trying URL 'https://repo.anaconda.com/miniconda/Miniconda3-latest-Windows-x86_64.exe' Content type 'application/octet-stream' length 74687656 bytes (71.2 MB) ================================================== downloaded 71.2 MB Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: F:\biocbuild\bbs-3.15-bioc\tmpdir\RtmpKmAbAo\rr\Test added / updated specs: - conda The following packages will be downloaded: package | build ---------------------------|----------------- ca-certificates-2022.07.19 | haa95532_0 123 KB certifi-2022.9.24 | py39haa95532_0 154 KB cffi-1.15.1 | py39h2bbff1b_0 218 KB colorama-0.4.5 | py39haa95532_0 28 KB conda-22.9.0 | py39haa95532_0 888 KB conda-package-handling-1.9.0| py39h8cc25b3_0 726 KB cryptography-37.0.1 | py39h21b164f_0 977 KB idna-3.4 | py39haa95532_0 93 KB openssl-1.1.1q | h2bbff1b_0 4.8 MB pip-22.2.2 | py39haa95532_0 2.3 MB requests-2.28.1 | py39haa95532_0 99 KB setuptools-63.4.1 | py39haa95532_0 1.0 MB sqlite-3.39.3 | h2bbff1b_0 804 KB toolz-0.11.2 | pyhd3eb1b0_0 49 KB tqdm-4.64.1 | py39haa95532_0 143 KB tzdata-2022e | h04d1e81_0 107 KB urllib3-1.26.11 | py39haa95532_0 184 KB ------------------------------------------------------------ Total: 12.7 MB The following NEW packages will be INSTALLED: toolz pkgs/main/noarch::toolz-0.11.2-pyhd3eb1b0_0 The following packages will be REMOVED: conda-content-trust-0.1.1-pyhd3eb1b0_0 six-1.16.0-pyhd3eb1b0_1 The following packages will be UPDATED: ca-certificates 2022.3.29-haa95532_1 --> 2022.07.19-haa95532_0 certifi 2021.10.8-py39haa95532_2 --> 2022.9.24-py39haa95532_0 cffi 1.15.0-py39h2bbff1b_1 --> 1.15.1-py39h2bbff1b_0 colorama pkgs/main/noarch::colorama-0.4.4-pyhd~ --> pkgs/main/win-64::colorama-0.4.5-py39haa95532_0 conda 4.12.0-py39haa95532_0 --> 22.9.0-py39haa95532_0 conda-package-han~ 1.8.1-py39h8cc25b3_0 --> 1.9.0-py39h8cc25b3_0 cryptography 36.0.0-py39h21b164f_0 --> 37.0.1-py39h21b164f_0 idna pkgs/main/noarch::idna-3.3-pyhd3eb1b0~ --> pkgs/main/win-64::idna-3.4-py39haa95532_0 openssl 1.1.1n-h2bbff1b_0 --> 1.1.1q-h2bbff1b_0 pip 21.2.4-py39haa95532_0 --> 22.2.2-py39haa95532_0 requests pkgs/main/noarch::requests-2.27.1-pyh~ --> pkgs/main/win-64::requests-2.28.1-py39haa95532_0 setuptools 61.2.0-py39haa95532_0 --> 63.4.1-py39haa95532_0 sqlite 3.38.2-h2bbff1b_0 --> 3.39.3-h2bbff1b_0 tqdm pkgs/main/noarch::tqdm-4.63.0-pyhd3eb~ --> pkgs/main/win-64::tqdm-4.64.1-py39haa95532_0 tzdata 2022a-hda174b7_0 --> 2022e-h04d1e81_0 urllib3 pkgs/main/noarch::urllib3-1.26.8-pyhd~ --> pkgs/main/win-64::urllib3-1.26.11-py39haa95532_0 Downloading and Extracting Packages conda-22.9.0 | 888 KB | | 0% conda-22.9.0 | 888 KB | ########## | 100% conda-22.9.0 | 888 KB | ########## | 100% conda-package-handli | 726 KB | | 0% conda-package-handli | 726 KB | ########## | 100% conda-package-handli | 726 KB | ########## | 100% cryptography-37.0.1 | 977 KB | | 0% cryptography-37.0.1 | 977 KB | ########## | 100% cryptography-37.0.1 | 977 KB | ########## | 100% cffi-1.15.1 | 218 KB | | 0% cffi-1.15.1 | 218 KB | ########## | 100% cffi-1.15.1 | 218 KB | ########## | 100% urllib3-1.26.11 | 184 KB | | 0% urllib3-1.26.11 | 184 KB | ########## | 100% urllib3-1.26.11 | 184 KB | ########## | 100% certifi-2022.9.24 | 154 KB | | 0% certifi-2022.9.24 | 154 KB | ########## | 100% certifi-2022.9.24 | 154 KB | ########## | 100% pip-22.2.2 | 2.3 MB | | 0% pip-22.2.2 | 2.3 MB | ########## | 100% pip-22.2.2 | 2.3 MB | ########## | 100% colorama-0.4.5 | 28 KB | | 0% colorama-0.4.5 | 28 KB | ########## | 100% colorama-0.4.5 | 28 KB | ########## | 100% toolz-0.11.2 | 49 KB | | 0% toolz-0.11.2 | 49 KB | ########## | 100% toolz-0.11.2 | 49 KB | ########## | 100% tqdm-4.64.1 | 143 KB | | 0% tqdm-4.64.1 | 143 KB | ########## | 100% tqdm-4.64.1 | 143 KB | ########## | 100% ca-certificates-2022 | 123 KB | | 0% ca-certificates-2022 | 123 KB | ########## | 100% ca-certificates-2022 | 123 KB | ########## | 100% openssl-1.1.1q | 4.8 MB | | 0% openssl-1.1.1q | 4.8 MB | ########## | 100% openssl-1.1.1q | 4.8 MB | ########## | 100% tzdata-2022e | 107 KB | | 0% tzdata-2022e | 107 KB | ########## | 100% tzdata-2022e | 107 KB | ########## | 100% idna-3.4 | 93 KB | | 0% idna-3.4 | 93 KB | ########## | 100% idna-3.4 | 93 KB | ########## | 100% sqlite-3.39.3 | 804 KB | | 0% sqlite-3.39.3 | 804 KB | ########## | 100% sqlite-3.39.3 | 804 KB | ########## | 100% requests-2.28.1 | 99 KB | | 0% requests-2.28.1 | 99 KB | ########## | 100% requests-2.28.1 | 99 KB | ########## | 100% setuptools-63.4.1 | 1.0 MB | | 0% setuptools-63.4.1 | 1.0 MB | ########## | 100% setuptools-63.4.1 | 1.0 MB | ########## | 100% Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done + "F:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpKmAbAo/rr/Test/condabin/conda.bat" "create" "--yes" "--name" "r-reticulate" "python=3.8" "numpy" "--quiet" "-c" "conda-forge" Collecting package metadata (current_repodata.json): ...working... failed CondaSSLError: OpenSSL appears to be unavailable on this machine. OpenSSL is required to download and install packages. Exception: HTTPSConnectionPool(host='conda.anaconda.org', port=443): Max retries exceeded with url: /conda-forge/win-64/current_repodata.json (Caused by SSLError("Can't connect to HTTPS URL because the SSL module is not available.")) Quitting from lines 93-96 (Herper.Rmd) Error: processing vignette 'Herper.Rmd' failed with diagnostics: Error creating conda environment 'r-reticulate' [exit code 1] --- failed re-building 'Herper.Rmd' --- re-building 'QuickStart.Rmd' using rmarkdown --- finished re-building 'QuickStart.Rmd' SUMMARY: processing the following file failed: 'Herper.Rmd' Error: Vignette re-building failed. Execution halted