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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL GeomxTools
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'GeomxTools' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GeomxTools'
    finding HTML links ... done
    NanoStringGeoMxSet-class                html  
    finding level-2 HTML links ... done

    aggregateCounts                         html  
    checkQCFlags-NanoStringGeoMxSet-method
                                            html  
    checkQCFlags                            html  
    countsShiftedByOne                      html  
    logtBase                                html  
    mixedModelDE                            html  
    ngeoMean                                html  
    ngeoSD                                  html  
    normalize-NanoStringGeoMxSet-method     html  
    readDccFile                             html  
    readNanoStringGeoMxSet                  html  
    readPKCFile                             html  
    setBackgroundQCFlags                    html  
    setBioProbeQCFlags                      html  
    setGeoMxQCFlags                         html  
    setQCFlags-NanoStringGeoMxSet-method    html  
    setSegmentQCFlags                       html  
    setSeqQCFlags                           html  
    shiftCountsOne                          html  
    summarizeNegatives                      html  
    writeNanoStringGeoMxSet                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GeomxTools)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'DEsubs' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'zinbwave' is missing or broken
 done