Back to Workflows build report for BioC 3.14

This page was generated on 2022-04-11 21:00:10 -0400 (Mon, 11 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4323
riesling1Windows Server 2019 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4108
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4136
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for TCGAWorkflow on riesling1


To the developers/maintainers of the TCGAWorkflow package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 28/29HostnameOS / ArchINSTALLBUILD
TCGAWorkflow 1.18.1  (landing page)
Tiago Chedraoui Silva
Snapshot Date: 2022-04-11 14:45:01 -0400 (Mon, 11 Apr 2022)
git_url: https://git.bioconductor.org/packages/TCGAWorkflow
git_branch: RELEASE_3_14
git_last_commit: 9e20231
git_last_commit_date: 2022-01-06 15:57:43 -0400 (Thu, 06 Jan 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    ERROR  
riesling1Windows Server 2019 Standard / x64  OK    OK  
machv2macOS 10.14.6 Mojave / x86_64  OK    ERROR  

Summary

Package: TCGAWorkflow
Version: 1.18.1
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/workflows/src/contrib/TCGAWorkflow_1.18.1.tar.gz && rm -rf TCGAWorkflow.buildbin-libdir && mkdir TCGAWorkflow.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TCGAWorkflow.buildbin-libdir TCGAWorkflow_1.18.1.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL TCGAWorkflow_1.18.1.zip && rm TCGAWorkflow_1.18.1.tar.gz TCGAWorkflow_1.18.1.zip
StartedAt: 2022-04-11 15:01:17 -0400 (Mon, 11 Apr 2022)
EndedAt: 2022-04-11 15:02:23 -0400 (Mon, 11 Apr 2022)
EllapsedTime: 66.3 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/workflows/src/contrib/TCGAWorkflow_1.18.1.tar.gz && rm -rf TCGAWorkflow.buildbin-libdir && mkdir TCGAWorkflow.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TCGAWorkflow.buildbin-libdir TCGAWorkflow_1.18.1.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL TCGAWorkflow_1.18.1.zip && rm TCGAWorkflow_1.18.1.tar.gz TCGAWorkflow_1.18.1.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  204k  100  204k    0     0   391k      0 --:--:-- --:--:-- --:--:--  391k

install for i386

* installing *source* package 'TCGAWorkflow' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'SummarizedExperiment::as.data.frame' by 'motifStack::as.data.frame' when loading 'TCGAWorkflow'
** help
*** installing help indices
  converting help for package 'TCGAWorkflow'
    finding HTML links ... done
    TCGAWorkflow                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'SummarizedExperiment::as.data.frame' by 'motifStack::as.data.frame' when loading 'TCGAWorkflow'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'SummarizedExperiment::as.data.frame' by 'motifStack::as.data.frame' when loading 'TCGAWorkflow'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'TCGAWorkflow' ...
** testing if installed package can be loaded
Warning: replacing previous import 'SummarizedExperiment::as.data.frame' by 'motifStack::as.data.frame' when loading 'TCGAWorkflow'
* MD5 sums
packaged installation of 'TCGAWorkflow' as TCGAWorkflow_1.18.1.zip
* DONE (TCGAWorkflow)
* installing to library 'D:/biocbuild/bbs-3.14-bioc/R/library'
package 'TCGAWorkflow' successfully unpacked and MD5 sums checked