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### Running command:
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###   chmod a+r SingscoreAMLMutations -R && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data SingscoreAMLMutations
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* checking for file 'SingscoreAMLMutations/DESCRIPTION' ... OK
* preparing 'SingscoreAMLMutations':
* checking DESCRIPTION meta-information ...It is recommended to use 'given' instead of 'middle'.
It is recommended to use 'given' instead of 'middle'.
 OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'workflow_transcriptional_mut_sig.Rmd' using rmarkdown
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o GDCquery: Searching in GDC database
--------------------------------------
Genome of reference: hg38
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oo Accessing GDC. This might take a while...
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ooo Project: TCGA-LAML
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oo Filtering results
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ooo By data.type
Quitting from lines 162-176 (workflow_transcriptional_mut_sig.Rmd) 
Error: processing vignette 'workflow_transcriptional_mut_sig.Rmd' failed with diagnostics:
Please set a valid workflow.type argument from the list below:
  => STAR - Counts
--- failed re-building 'workflow_transcriptional_mut_sig.Rmd'

--- re-building 'workflow_transcriptional_mut_sig_chinese.Rmd' using rmarkdown
--------------------------------------
o GDCquery: Searching in GDC database
--------------------------------------
Genome of reference: hg38
--------------------------------------------
oo Accessing GDC. This might take a while...
--------------------------------------------
ooo Project: TCGA-LAML
--------------------
oo Filtering results
--------------------
ooo By data.type
Quitting from lines 159-173 (workflow_transcriptional_mut_sig_chinese.Rmd) 
Error: processing vignette 'workflow_transcriptional_mut_sig_chinese.Rmd' failed with diagnostics:
Please set a valid workflow.type argument from the list below:
  => STAR - Counts
--- failed re-building 'workflow_transcriptional_mut_sig_chinese.Rmd'

SUMMARY: processing the following files failed:
  'workflow_transcriptional_mut_sig.Rmd'
  'workflow_transcriptional_mut_sig_chinese.Rmd'

Error: Vignette re-building failed.
Execution halted