############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/workflows/src/contrib/ExpressionNormalizationWorkflow_1.20.0.tar.gz && rm -rf ExpressionNormalizationWorkflow.buildbin-libdir && mkdir ExpressionNormalizationWorkflow.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ExpressionNormalizationWorkflow.buildbin-libdir ExpressionNormalizationWorkflow_1.20.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ExpressionNormalizationWorkflow_1.20.0.zip && rm ExpressionNormalizationWorkflow_1.20.0.tar.gz ExpressionNormalizationWorkflow_1.20.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 1644k 100 1644k 0 0 3382k 0 --:--:-- --:--:-- --:--:-- 3382k install for i386 * installing *source* package 'ExpressionNormalizationWorkflow' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'Biobase::anyMissing' by 'matrixStats::anyMissing' when loading 'ExpressionNormalizationWorkflow' Warning: replacing previous import 'Biobase::rowMedians' by 'matrixStats::rowMedians' when loading 'ExpressionNormalizationWorkflow' ** help Warning: D:/biocbuild/bbs-3.14-workflows/tmpdir/RtmpoPZP0L/R.INSTALL8e048a37ac2/ExpressionNormalizationWorkflow/man/ExpressionNormalizationWorkflow-package.Rd:29: All text must be in a section Warning: D:/biocbuild/bbs-3.14-workflows/tmpdir/RtmpoPZP0L/R.INSTALL8e048a37ac2/ExpressionNormalizationWorkflow/man/ExpressionNormalizationWorkflow-package.Rd:30: All text must be in a section *** installing help indices converting help for package 'ExpressionNormalizationWorkflow' finding HTML links ... done ExpressionNormalizationWorkflow-package html conTocat html expSetobj html pvcAnaly html finding level-2 HTML links ... done snmAnaly html surVarAnaly html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'Biobase::anyMissing' by 'matrixStats::anyMissing' when loading 'ExpressionNormalizationWorkflow' Warning: replacing previous import 'Biobase::rowMedians' by 'matrixStats::rowMedians' when loading 'ExpressionNormalizationWorkflow' ** testing if installed package can be loaded from final location Warning: replacing previous import 'Biobase::anyMissing' by 'matrixStats::anyMissing' when loading 'ExpressionNormalizationWorkflow' Warning: replacing previous import 'Biobase::rowMedians' by 'matrixStats::rowMedians' when loading 'ExpressionNormalizationWorkflow' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'ExpressionNormalizationWorkflow' ... ** testing if installed package can be loaded Warning: replacing previous import 'Biobase::anyMissing' by 'matrixStats::anyMissing' when loading 'ExpressionNormalizationWorkflow' Warning: replacing previous import 'Biobase::rowMedians' by 'matrixStats::rowMedians' when loading 'ExpressionNormalizationWorkflow' * MD5 sums packaged installation of 'ExpressionNormalizationWorkflow' as ExpressionNormalizationWorkflow_1.20.0.zip * DONE (ExpressionNormalizationWorkflow) * installing to library 'D:/biocbuild/bbs-3.14-bioc/R/library' package 'ExpressionNormalizationWorkflow' successfully unpacked and MD5 sums checked