Back to Build/check report for BioC 3.14 experimental data
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

This page was generated on 2022-04-13 14:50:24 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for MouseGastrulationData on nebbiolo2


To the developers/maintainers of the MouseGastrulationData package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 239/408HostnameOS / ArchINSTALLBUILDCHECK
MouseGastrulationData 1.8.0  (landing page)
Jonathan Griffiths
Snapshot Date: 2022-04-13 07:30:01 -0400 (Wed, 13 Apr 2022)
git_url: https://git.bioconductor.org/packages/MouseGastrulationData
git_branch: RELEASE_3_14
git_last_commit: dd27476
git_last_commit_date: 2021-10-26 12:36:49 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: MouseGastrulationData
Version: 1.8.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:MouseGastrulationData.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings MouseGastrulationData_1.8.0.tar.gz
StartedAt: 2022-04-13 11:36:44 -0400 (Wed, 13 Apr 2022)
EndedAt: 2022-04-13 11:55:38 -0400 (Wed, 13 Apr 2022)
EllapsedTime: 1134.2 seconds
RetCode: 0
Status:   OK  
CheckDir: MouseGastrulationData.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:MouseGastrulationData.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings MouseGastrulationData_1.8.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.14-data-experiment/meat/MouseGastrulationData.Rcheck’
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MouseGastrulationData/DESCRIPTION’ ... OK
* this is package ‘MouseGastrulationData’ version ‘1.8.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MouseGastrulationData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
LohoffSeqFISHData  833.664  2.603 837.552
EmbryoAtlasData     39.043  1.621  43.082
Tal1ChimeraData     29.509  2.508  33.643
TChimeraData        24.057  0.892  26.645
WTChimeraData       22.227  1.632  25.348
GuibentifExtraData   9.911  0.164  11.550
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

MouseGastrulationData.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL MouseGastrulationData
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘MouseGastrulationData’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MouseGastrulationData)

Tests output


Example timings

MouseGastrulationData.Rcheck/MouseGastrulationData-Ex.timings

nameusersystemelapsed
AtlasSampleMetadata0.0040.0000.003
BPSATACData000
EmbryoAtlasData39.043 1.62143.082
EmbryoCelltypeColours000
GuibentifExtraData 9.911 0.16411.550
LohoffSeqFISHData833.664 2.603837.552
TChimeraData24.057 0.89226.645
Tal1ChimeraData29.509 2.50833.643
WTChimeraData22.227 1.63225.348