Back to Build/check report for BioC 3.14 annotations
ABCDEFGHIJKLMNO[P]QRSTUVWXYZ

This page was generated on 2022-01-19 06:00:08 -0500 (Wed, 19 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4328
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for phastCons30way.UCSC.hg38 on nebbiolo2


To the developers/maintainers of the phastCons30way.UCSC.hg38 package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 28/33HostnameOS / ArchINSTALLBUILDCHECK
phastCons30way.UCSC.hg38 3.13.0  (landing page)
Robert Castelo
Snapshot Date: 2022-01-19 02:30:01 -0500 (Wed, 19 Jan 2022)
git_url: https://git.bioconductor.org/packages/phastCons30way.UCSC.hg38
git_branch: master
git_last_commit: c114273
git_last_commit_date: 2020-12-22 10:39:25 -0500 (Tue, 22 Dec 2020)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: phastCons30way.UCSC.hg38
Version: 3.13.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:phastCons30way.UCSC.hg38.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings phastCons30way.UCSC.hg38_3.13.0.tar.gz
StartedAt: 2022-01-19 03:02:44 -0500 (Wed, 19 Jan 2022)
EndedAt: 2022-01-19 03:03:23 -0500 (Wed, 19 Jan 2022)
EllapsedTime: 38.8 seconds
RetCode: 0
Status:   OK  
CheckDir: phastCons30way.UCSC.hg38.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:phastCons30way.UCSC.hg38.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings phastCons30way.UCSC.hg38_3.13.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.14-data-annotation/meat/phastCons30way.UCSC.hg38.Rcheck’
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘phastCons30way.UCSC.hg38/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘phastCons30way.UCSC.hg38’ version ‘3.13.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘phastCons30way.UCSC.hg38’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

phastCons30way.UCSC.hg38.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL phastCons30way.UCSC.hg38
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘phastCons30way.UCSC.hg38’ ...
** using staged installation
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (phastCons30way.UCSC.hg38)

Tests output


Example timings

phastCons30way.UCSC.hg38.Rcheck/phastCons30way.UCSC.hg38-Ex.timings

nameusersystemelapsed
package000