############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/waddR_1.8.0.tar.gz && rm -rf waddR.buildbin-libdir && mkdir waddR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=waddR.buildbin-libdir waddR_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL waddR_1.8.0.zip && rm waddR_1.8.0.tar.gz waddR_1.8.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 26 119k 26 32189 0 0 203k 0 --:--:-- --:--:-- --:--:-- 204k 100 119k 100 119k 0 0 170k 0 --:--:-- --:--:-- --:--:-- 170k install for i386 * installing *source* package 'waddR' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c wasserstein.cpp -o wasserstein.o wasserstein.cpp: In function 'std::vector rep_weighted(std::vector, std::vector >)': wasserstein.cpp:348:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for(int i=0; i concat(std::vector&, std::vector&)': wasserstein.cpp:386:27: warning: variable 'out_it_end' set but not used [-Wunused-but-set-variable] vector::iterator out_it_end = out.end(); ^~~~~~~~~~ wasserstein.cpp: In function 'std::vector > interval_table(const std::vector&, const std::vector&, int)': wasserstein.cpp:584:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] while (data_i < datavec.size()) { ~~~~~~~^~~~~~~~~~~~~~~~ wasserstein.cpp: In function 'double cor_test_export(Rcpp::NumericVector, Rcpp::NumericVector)': wasserstein.cpp:1088:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int j=0; j&, const std::vector&, double, double) [with T = double]': wasserstein.cpp:716:49: required from here wasserstein.cpp:439:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int i=0; i operator-(const std::vector&, const std::vector&) [with T = double]': wasserstein.cpp:778:44: required from here wasserstein.cpp:121:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int i=0; i cumSum(const std::vector&, int) [with T = double]': wasserstein.cpp:884:17: required from here wasserstein.cpp:472:47: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] int upper = ((last_index > 0) && (last_index <= x.size()) ~~~~~~~~~~~~^~~~~~~~~~~~ wasserstein.cpp: In instantiation of 'std::vector operator*(const std::vector&, const std::vector&) [with T = double]': wasserstein.cpp:912:62: required from here wasserstein.cpp:101:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int i=0; i operator+(std::vector, std::vector) [with T = double]': wasserstein.cpp:933:15: required from here wasserstein.cpp:53:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int i=0; i operator/(const std::vector&, const std::vector&) [with T = double]': wasserstein.cpp:1046:15: required from here wasserstein.cpp:169:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int i=0; i quantile(const std::vector&, std::vector, int) [with T = double]': wasserstein.cpp:1162:27: required from here wasserstein.cpp:501:4: warning: unused variable 'max_x' [-Wunused-variable] T max_x = x_sorted[n-1]; ^~~~~ C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o waddR.dll tmp.def RcppExports.o wasserstein.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/waddR.buildbin-libdir/00LOCK-waddR/00new/waddR/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'waddR' finding HTML links ... done brownianBridgeEmpcdf.url html dot-brownianBridgeEmpcdf html dot-combinePVal html dot-fishersCombinedPval html dot-gpdFittedPValue html dot-quantileCorrelation html dot-relativeError html dot-testWass html dot-wassPermProcedure html dot-wassersteinTestAsy html dot-wassersteinTestSp html permutations html squared_wass_approx html squared_wass_decomp html testZeroes-method html waddR-package html wasserstein.sc-method html wasserstein.test html wasserstein_metric html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'waddR' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c wasserstein.cpp -o wasserstein.o wasserstein.cpp: In function 'std::vector rep_weighted(std::vector, std::vector >)': wasserstein.cpp:348:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for(int i=0; i concat(std::vector&, std::vector&)': wasserstein.cpp:386:27: warning: variable 'out_it_end' set but not used [-Wunused-but-set-variable] vector::iterator out_it_end = out.end(); ^~~~~~~~~~ wasserstein.cpp: In function 'std::vector > interval_table(const std::vector&, const std::vector&, int)': wasserstein.cpp:584:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] while (data_i < datavec.size()) { ~~~~~~~^~~~~~~~~~~~~~~~ wasserstein.cpp: In function 'double cor_test_export(Rcpp::NumericVector, Rcpp::NumericVector)': wasserstein.cpp:1088:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for (int i=0; i::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for (int j=0; j&, const std::vector&, double, double) [with T = double]': wasserstein.cpp:716:49: required from here wasserstein.cpp:439:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for (int i=0; i operator-(const std::vector&, const std::vector&) [with T = double]': wasserstein.cpp:778:44: required from here wasserstein.cpp:121:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for (int i=0; i cumSum(const std::vector&, int) [with T = double]': wasserstein.cpp:884:17: required from here wasserstein.cpp:472:47: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] int upper = ((last_index > 0) && (last_index <= x.size()) ~~~~~~~~~~~~^~~~~~~~~~~~ wasserstein.cpp: In instantiation of 'std::vector operator*(const std::vector&, const std::vector&) [with T = double]': wasserstein.cpp:912:62: required from here wasserstein.cpp:101:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for (int i=0; i operator+(std::vector, std::vector) [with T = double]': wasserstein.cpp:933:15: required from here wasserstein.cpp:53:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for (int i=0; i operator/(const std::vector&, const std::vector&) [with T = double]': wasserstein.cpp:1046:15: required from here wasserstein.cpp:169:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for (int i=0; i quantile(const std::vector&, std::vector, int) [with T = double]': wasserstein.cpp:1162:27: required from here wasserstein.cpp:501:4: warning: unused variable 'max_x' [-Wunused-variable] T max_x = x_sorted[n-1]; ^~~~~ C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o waddR.dll tmp.def RcppExports.o wasserstein.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/waddR.buildbin-libdir/waddR/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'waddR' as waddR_1.8.0.zip * DONE (waddR) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'waddR' successfully unpacked and MD5 sums checked