############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/tilingArray_1.72.0.tar.gz && rm -rf tilingArray.buildbin-libdir && mkdir tilingArray.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=tilingArray.buildbin-libdir tilingArray_1.72.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL tilingArray_1.72.0.zip && rm tilingArray_1.72.0.tar.gz tilingArray_1.72.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 1161k 100 1161k 0 0 1352k 0 --:--:-- --:--:-- --:--:-- 1353k install for i386 * installing *source* package 'tilingArray' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c findsegments.c -o findsegments.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c sampleStep.c -o sampleStep.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o tilingArray.dll tmp.def findsegments.o sampleStep.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/tilingArray.buildbin-libdir/00LOCK-tilingArray/00new/tilingArray/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'tilingArray' finding HTML links ... done PMindex html breakpointsPretend html class-segmentation html comparisonPlot html costMatrix html findsegments html gffSub html normalizeByReference html otherStrand html plotAlongChrom html plotAlongChromLegend html plotFeatures html plotSegmentationDots html plotSegmentationHeatmap html plotpenLL html posMin html qcPlots html readCel2eSet html sampleStep html segChrom html segment html segnf html tilingArray-package html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'tilingArray' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c findsegments.c -o findsegments.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c sampleStep.c -o sampleStep.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o tilingArray.dll tmp.def findsegments.o sampleStep.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/tilingArray.buildbin-libdir/tilingArray/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'tilingArray' as tilingArray_1.72.0.zip * DONE (tilingArray) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'tilingArray' successfully unpacked and MD5 sums checked