############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data slinky ### ############################################################################## ############################################################################## * checking for file ‘slinky/DESCRIPTION’ ... OK * preparing ‘slinky’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘LINCS-analysis.Rmd’ using rmarkdown Warning: Package 'slinky' is deprecated and will be removed from Bioconductor version 3.15 Quitting from lines 233-239 (LINCS-analysis.Rmd) Error: processing vignette 'LINCS-analysis.Rmd' failed with diagnostics: Could not connect to clue.io APi. Please verify connecivity. --- failed re-building ‘LINCS-analysis.Rmd’ SUMMARY: processing the following file failed: ‘LINCS-analysis.Rmd’ Error: Vignette re-building failed. Execution halted