############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/sesame_1.12.9.tar.gz && rm -rf sesame.buildbin-libdir && mkdir sesame.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sesame.buildbin-libdir sesame_1.12.9.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL sesame_1.12.9.zip && rm sesame_1.12.9.tar.gz sesame_1.12.9.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 140k 100 140k 0 0 528k 0 --:--:-- --:--:-- --:--:-- 531k install for i386 * installing *source* package 'sesame' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'sesame' finding HTML links ... done BetaValueToMValue html DML html DMR html MValueToBetaValue html RGChannelSetToSigDFs html SNPcheck html SigDF html SigDFToRatioSet html SigDFsToRGChannelSet html addMask html as.data.frame.sesameQC html attachManifest html bSubComplete html bSubMostVariable html bSubProbes html binSignals html bisConversionControl html calcDatabaseSetStatistics1 html calcDatabaseSetStatisticsAll html checkLevels html chipAddressToSignal html cnSegmentation html compareDatbaseSetOverlap html compareMouseStrainReference html compareMouseTissueReference html controls html createDatabaseSetNetwork html createUCSCtrack html deidentify html detectionPnegEcdf html detectionPoobEcdf html detectionPoobEcdf2 html diffRefSet html dmContrasts html dyeBiasCorr html dyeBiasCorrMostBalanced html dyeBiasCorrTypeINorm html dyeBiasDistortion html estimateCellComposition html estimateLeukocyte html extractDesign html formatVCF html getAFTypeIbySumAlleles html getAutosomeProbes html getBetas html getBinCoordinates html getDatabaseSetOverlap html getNormCtls html getProbesByChromosome html getProbesByGene html getProbesByRegion html getProbesByTSS html getRefSet html getSexInfo html inferEthnicity html inferInfiniumIChannel html inferSex html inferSexKaryotypes html inferSpecies html inferStrain html inferTissue html initFileSet html isUniqProbeID html mapFileSet html meanIntensity html medianTotalIntensity html neob html noMasked html noob html openSesame html openSesameToFile html plotLollipop html plotVolcano html predictAgeHorvath353 html predictAgeSkinBlood html predictMouseAgeInMonth html print.DMLSummary html print.SigDF html print.fileSet html print.sesameQC html probeID_designType html probeSuccessRate html qualityMask html qualityRank html reIdentify html readFileSet html readIDATpair html reopenSesame html resetMask html scrub html scrubSoft html sdfPlatform html sdf_read_table html sdf_write_table html searchIDATprefixes html segmentBins html sesame-package html sesamePlotIntensVsBetas html sesamePlotRedGrnQQ html sesameQC html sesamize html setMask html setMaskBySpecies html signalMU html sliceFileSet html summaryExtractTest html testEnrichment html testEnrichment1 html testEnrichmentFGSEA html testEnrichmentFisher html testEnrichmentGene html testEnrichmentSpearman html totalIntensities html twoCompsEst2 html visualizeGene html visualizeProbes html visualizeRegion html visualizeSegments html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'sesame' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'sesame' as sesame_1.12.9.zip * DONE (sesame) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'sesame' successfully unpacked and MD5 sums checked