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### Running command:
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###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch scAlign
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* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
* installing *source* package 'scAlign' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'scAlign'
    finding HTML links ... done
    GetCrit                                 html  
    PlotTSNE                                html  
    RunMultiCCA                             html  
    UpdateW                                 html  
    alignment_score                         html  
    cellbench                               html  
    compute_kernel_matrix                   html  
    decoderModel_add_mse_loss               html  
    decoderModel_calc_projection            html  
    decoderModel_create_train_op            html  
    decoderModel_emb_to_proj                html  
    decoderModel_train_decoder              html  
    decoder_large                           html  
    decoder_medium                          html  
    decoder_small                           html  
    define_kernel_matrix                    html  
    dot-check_all_args                      html  
    dot-check_tensorflow                    html  
    dot-data_setup                          html  
    dot-early_stop                          html  
    dot-is.wholenumber                      html  
    dot-learning_rate                       html  
    dot-plotTSNE                            html  
    encoderModel_add_logit_loss             html  
    encoderModel_add_semisup_loss_data_driven
                                            html  
    encoderModel_calc_embedding             html  
    encoderModel_calc_logit                 html  
    encoderModel_create_train_op            html  
    encoderModel_data_to_embedding          html  
    encoderModel_embedding_to_logit         html  
    encoderModel_gaussian_kernel            html  
    encoderModel_train_encoder              html  
    encoderModel_train_encoder_multi        html  
    encoder_large                           html  
    encoder_medium                          html  
    encoder_small                           html  
    gaussianKernel                          html  
    l2n                                     html  
    scAlign                                 html  
    scAlignArguments                        html  
    scAlignCreateObject                     html  
    scAlignMulti                            html  
    scAlignOptions                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (scAlign)
Making 'packages.html' ... done