############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/plotgardener_1.0.17.tar.gz && rm -rf plotgardener.buildbin-libdir && mkdir plotgardener.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=plotgardener.buildbin-libdir plotgardener_1.0.17.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL plotgardener_1.0.17.zip && rm plotgardener_1.0.17.tar.gz plotgardener_1.0.17.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 44 2297k 44 1021k 0 0 1096k 0 0:00:02 --:--:-- 0:00:02 1097k 100 2297k 100 2297k 0 0 1439k 0 0:00:01 0:00:01 --:--:-- 1439k install for i386 * installing *source* package 'plotgardener' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c checkRow.cpp -o checkRow.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rebinBigwig.cpp -o rebinBigwig.o C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o plotgardener.dll tmp.def RcppExports.o checkRow.o rebinBigwig.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/plotgardener.buildbin-libdir/00LOCK-plotgardener/00new/plotgardener/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'plotgardener' finding HTML links ... done annoDomains html annoGenomeLabel html annoHeatmapLegend html annoHighlight html annoPixels html annoSegments html annoText html annoXaxis html annoYaxis html annoZoomLines html assembly html c html colorby html defaultPackages html genomes html mapColors html pageCreate html pageGuideHide html pageGuideHorizontal html pageGuideShow html pageGuideVertical html pagePlotPlace html pagePlotRemove html pgParams html plotCircle html plotGG html plotGenes html plotGenomeLabel html plotHicRectangle html plotHicSquare html plotHicTriangle html plotIdeogram html plotLegend html plotManhattan html plotPairs html plotPairsArches html plotPolygon html plotRanges html plotRaster html plotRect html plotSegments html plotSignal html plotText html plotTranscripts html plotgardener html readBigwig html readHic html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'plotgardener' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c checkRow.cpp -o checkRow.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rebinBigwig.cpp -o rebinBigwig.o C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o plotgardener.dll tmp.def RcppExports.o checkRow.o rebinBigwig.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/plotgardener.buildbin-libdir/plotgardener/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'plotgardener' as plotgardener_1.0.17.zip * DONE (plotgardener) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'plotgardener' successfully unpacked and MD5 sums checked