############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf phenoTest.buildbin-libdir && mkdir phenoTest.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=phenoTest.buildbin-libdir phenoTest_1.42.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'phenoTest' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'phenoTest' finding HTML links ... done ClusterPhenoTest html ExpressionPhenoTest html barplotSignatures-methods html barplotSignifSignatures-methods html epheno-class html finding level-2 HTML links ... done epheno html epheno2html html ephenoGetters html eset html eset.genelevel html eset2genelevel html export2CSV-methods html export2CSV html findCopyNumber html genesInArea html getEsPositions html getGseaSignatures html getVars2test-methods html getVars2test html gsea html gsea.subset html gsea2html html gseaData-class html gseaSignatures-class html gseaSignatures-methods html gseaSignatures html gseaSignaturesSign-class html gseaSignaturesVar-class html gseaSignificance html gseaSignificanceSign-class html gseaSignificanceVar-class html heatmapPhenoTest-methods html heatmapPhenoTest html pAdjust-methods html pAdjust html pca html phenoTest-package html plot.gsea html plot.gseaSignatures html plots4epheno html show-methods html smoothCoxph html summary.gsea html summary.gseaSignificance html write.html html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'phenoTest' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'phenoTest' as phenoTest_1.42.0.zip * DONE (phenoTest)