############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/pepStat_1.28.0.tar.gz && rm -rf pepStat.buildbin-libdir && mkdir pepStat.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pepStat.buildbin-libdir pepStat_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL pepStat_1.28.0.zip && rm pepStat_1.28.0.tar.gz pepStat_1.28.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 394k 100 394k 0 0 951k 0 --:--:-- --:--:-- --:--:-- 953k install for i386 * installing *source* package 'pepStat' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading No methods found in package 'GenomicRanges' for request: 'mcols<-' when loading 'pepStat' No methods found in package 'GenomicRanges' for request: 'mcols' when loading 'pepStat' No methods found in package 'IRanges' for request: 'values<-' when loading 'pepStat' No methods found in package 'IRanges' for request: 'values' when loading 'pepStat' ** help *** installing help indices converting help for package 'pepStat' finding HTML links ... done baselineCorrect.pSet html baseline_correct html create_db html finding level-2 HTML links ... done makeCalls html makePeptideSet html normalizeArray html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/pepStat.buildbin-libdir/00LOCK-pepStat/00new/pepStat/help/normalizeArray.html peptideSet-methods html peptideSet html plotArray html restab html shinyPepStat html slidingMean html summarizePeptides html ** building package indices ** installing vignettes 'pepStat.Rnw' ** testing if installed package can be loaded from temporary location No methods found in package 'GenomicRanges' for request: 'mcols<-' when loading 'pepStat' No methods found in package 'GenomicRanges' for request: 'mcols' when loading 'pepStat' No methods found in package 'IRanges' for request: 'values<-' when loading 'pepStat' No methods found in package 'IRanges' for request: 'values' when loading 'pepStat' ** testing if installed package can be loaded from final location No methods found in package 'GenomicRanges' for request: 'mcols<-' when loading 'pepStat' No methods found in package 'GenomicRanges' for request: 'mcols' when loading 'pepStat' No methods found in package 'IRanges' for request: 'values<-' when loading 'pepStat' No methods found in package 'IRanges' for request: 'values' when loading 'pepStat' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'pepStat' ... ** testing if installed package can be loaded No methods found in package 'GenomicRanges' for request: 'mcols<-' when loading 'pepStat' No methods found in package 'GenomicRanges' for request: 'mcols' when loading 'pepStat' No methods found in package 'IRanges' for request: 'values<-' when loading 'pepStat' No methods found in package 'IRanges' for request: 'values' when loading 'pepStat' * MD5 sums packaged installation of 'pepStat' as pepStat_1.28.0.zip * DONE (pepStat) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'pepStat' successfully unpacked and MD5 sums checked