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This page was generated on 2022-04-13 12:07:02 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for packFinder on tokay2


To the developers/maintainers of the packFinder package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/packFinder.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1359/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
packFinder 1.6.0  (landing page)
Jack Gisby
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/packFinder
git_branch: RELEASE_3_14
git_last_commit: e72ab2e
git_last_commit_date: 2021-10-26 12:56:48 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: packFinder
Version: 1.6.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/packFinder_1.6.0.tar.gz && rm -rf packFinder.buildbin-libdir && mkdir packFinder.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=packFinder.buildbin-libdir packFinder_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL packFinder_1.6.0.zip && rm packFinder_1.6.0.tar.gz packFinder_1.6.0.zip
StartedAt: 2022-04-12 04:47:29 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 04:48:22 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 53.3 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/packFinder_1.6.0.tar.gz && rm -rf packFinder.buildbin-libdir && mkdir packFinder.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=packFinder.buildbin-libdir packFinder_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL packFinder_1.6.0.zip && rm packFinder_1.6.0.tar.gz packFinder_1.6.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 62  874k   62  549k    0     0   640k      0  0:00:01 --:--:--  0:00:01  640k
100  874k  100  874k    0     0   625k      0  0:00:01  0:00:01 --:--:--  626k

install for i386

* installing *source* package 'packFinder' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'packFinder'
    finding HTML links ... done
    arabidopsisThalianaRefseq               html  
    blastAnalysis                           html  
    blastAnnotate                           html  
    collapseSeqs                            html  
    filterWildcards                         html  
    getPackSeqs                             html  
    getPacksFromCsv                         html  
    getPacksFromFasta                       html  
    getPacksFromGRanges                     html  
    getTsds                                 html  
    identifyPotentialPackElements           html  
    identifyTirMatches                      html  
    makeBlastDb                             html  
    packAlign                               html  
    packBlast                               html  
    packClust                               html  
    packFinder                              html  
    packMatches                             html  
    packSearch                              html  
    packsToCsv                              html  
    packsToFasta                            html  
    packsToGRanges                          html  
    readBlast                               html  
    readUc                                  html  
    tirClust                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'packFinder' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'packFinder' as packFinder_1.6.0.zip
* DONE (packFinder)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'packFinder' successfully unpacked and MD5 sums checked