############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/orthogene_1.0.2.tar.gz && rm -rf orthogene.buildbin-libdir && mkdir orthogene.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=orthogene.buildbin-libdir orthogene_1.0.2.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL orthogene_1.0.2.zip && rm orthogene_1.0.2.tar.gz orthogene_1.0.2.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 36 1033k 36 374k 0 0 518k 0 0:00:01 --:--:-- 0:00:01 517k 100 1033k 100 1033k 0 0 800k 0 0:00:01 0:00:01 --:--:-- 801k install for i386 * installing *source* package 'orthogene' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'orthogene' finding HTML links ... done add_synonyms html aggregate_mapped_genes html aggregate_rows html all_genes html all_genes_babelgene html check_gene_df_type html convert_orthologs html create_background html exp_mouse html exp_mouse_enst html get_orgdb_genomeinfodbdata html gprofiler_orgs html infer_species html invert_dictionary html map_genes html map_orthologs html map_orthologs_babelgene html map_orthologs_gprofiler html map_orthologs_homologene html map_species html message_parallel html orthogene-package html plot_benchmark_bar html plot_benchmark_scatter html report_orthologs html run_benchmark html taxa_id_dict html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'orthogene' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'orthogene' as orthogene_1.0.2.zip * DONE (orthogene) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'orthogene' successfully unpacked and MD5 sums checked