############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:mistyR.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings mistyR_1.2.1.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/mistyR.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'mistyR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'mistyR' version '1.2.1' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'mistyR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed collect_results 181.76 1.67 183.25 reexports 59.86 0.44 60.20 run_misty 58.99 0.35 59.25 remove_views 29.23 0.29 29.53 add_paraview 22.17 0.28 22.45 plot_improvement_stats 11.67 0.66 11.72 create_view 9.20 0.05 9.25 add_juxtaview 7.65 0.09 8.00 plot_contrast_results 6.66 0.43 6.78 plot_view_contributions 5.88 0.42 5.84 plot_interaction_heatmap 5.72 0.47 5.79 plot_interaction_communities 5.64 0.41 5.67 plot_contrast_heatmap 5.44 0.46 5.57 extract_signature 5.36 0.45 5.52 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed collect_results 172.22 1.50 174.42 reexports 57.27 0.64 57.83 run_misty 54.23 0.23 54.42 remove_views 28.34 0.02 28.35 add_paraview 24.55 0.06 24.61 plot_improvement_stats 10.90 0.61 10.95 create_view 10.28 0.02 10.31 plot_contrast_results 6.55 0.45 6.61 add_juxtaview 6.65 0.13 6.79 plot_interaction_communities 5.85 0.41 5.88 plot_contrast_heatmap 5.75 0.43 5.75 plot_view_contributions 5.89 0.23 6.00 extract_signature 5.61 0.18 5.55 plot_interaction_heatmap 5.51 0.28 5.53 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK