############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf microbiome.buildbin-libdir && mkdir microbiome.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=microbiome.buildbin-libdir microbiome_1.16.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'microbiome' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'microbiome' finding HTML links ... done abundances html finding level-2 HTML links ... done aggregate_rare html aggregate_taxa html alpha html associate html atlas1006 html baseline html bfratio html bimodality html bimodality_sarle html boxplot_abundance html chunk_reorder html cmat2table html collapse_replicates html core html core_abundance html core_heatmap html core_matrix html core_members html coverage html default_colors html densityplot html dietswap html divergence html diversity html dominance html dominant html estimate_stability html evenness html find_optima html gktau html group_age html group_bmi html heat html hitchip.taxonomy html hotplot html inequality html intermediate_stability html is_compositional html log_modulo_skewness html low_abundance html map_levels html merge_taxa2 html meta html microbiome-package html multimodality html neat html neatsort html overlap html peerj32 html plot_atlas html plot_composition html plot_core html plot_density html plot_frequencies html plot_landscape html plot_regression html plot_taxa_prevalence html plot_tipping html potential_analysis html potential_univariate html prevalence html quiet html radial_theta html rare html rare_abundance html rare_members html rarity html read_biom2phyloseq html read_csv2phyloseq html read_mothur2phyloseq html read_phyloseq html readcount html remove_samples html remove_taxa html richness html spreadplot html summarize_phyloseq html taxa html time_normalize html time_sort html timesplit html top html top_taxa html transform html ztransform html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'microbiome' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'microbiome' as microbiome_1.16.0.zip * DONE (microbiome)