############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/metagenomeSeq_1.36.0.tar.gz && rm -rf metagenomeSeq.buildbin-libdir && mkdir metagenomeSeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metagenomeSeq.buildbin-libdir metagenomeSeq_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL metagenomeSeq_1.36.0.zip && rm metagenomeSeq_1.36.0.tar.gz metagenomeSeq_1.36.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 949k 100 949k 0 0 978k 0 --:--:-- --:--:-- --:--:-- 979k install for i386 * installing *source* package 'metagenomeSeq' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading in method for 'MRihw' with signature '"fitFeatureModelResults"': no definition for class "fitFeatureModelResults" in method for 'MRihw' with signature '"fitZigResults"': no definition for class "fitZigResults" ** help *** installing help indices converting help for package 'metagenomeSeq' finding HTML links ... done MRcoefs html MRcounts html MRexperiment-class html MRexperiment2biom html MRfulltable html MRihw-fitFeatureModelResults html MRihw-fitZigResults html MRihw html MRtable html aggregateBySample html aggregateByTaxonomy html biom2MRexperiment html calcNormFactors html calcPosComponent html calcShrinkParameters html calcStandardError html calcZeroAdjustment html calcZeroComponent html calculateEffectiveSamples html correctIndices html correlationTest html cumNorm html cumNormMat html cumNormStat html cumNormStatFast html doCountMStep html doEStep html doZeroMStep html expSummary html exportMat html exportStats html extractMR html filterData html fitDO html fitFeatureModel html fitFeatureModelResults-class html fitLogNormal html fitMultipleTimeSeries html fitPA html fitSSTimeSeries html fitTimeSeries html fitZeroLogNormal html fitZig html fitZigResults-class html getCountDensity html getEpsilon html getNegativeLogLikelihoods html getPi html getZ html isItStillActive html libSize-set html libSize html loadBiom html loadMeta html loadMetaQ html loadPhenoData html lungData html makeLabels html mergeMRexperiments html mergeTable html metagenomeSeq-deprecated html metagenomeSeq-package html mouseData html newMRexperiment html normFactors-set html normFactors html plotBubble html plotClassTimeSeries html plotCorr html plotFeature html plotGenus html plotMRheatmap html plotOTU html plotOrd html plotRare html plotTimeSeries html posteriorProbs html returnAppropriateObj html ssFit html ssIntervalCandidate html ssPerm html ssPermAnalysis html trapz html ts2MRexperiment html uniqueFeatures html wrenchNorm html zigControl html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'metagenomeSeq' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'metagenomeSeq' as metagenomeSeq_1.36.0.zip * DONE (metagenomeSeq) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'metagenomeSeq' successfully unpacked and MD5 sums checked