############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/maanova_1.64.0.tar.gz && rm -rf maanova.buildbin-libdir && mkdir maanova.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=maanova.buildbin-libdir maanova_1.64.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL maanova_1.64.0.zip && rm maanova_1.64.0.tar.gz maanova_1.64.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 802k 100 802k 0 0 1075k 0 --:--:-- --:--:-- --:--:-- 1077k install for i386 * installing *source* package 'maanova' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c makeratio.c -o makeratio.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c masvd.c -o masvd.o masvd.c:114:2: warning: "/*" within comment [-Wcomment] /* work on a copy of x */ masvd.c:154:1: warning: "/*" within comment [-Wcomment] /*#ifndef IEEE_754 masvd.c:161:5: warning: "/*" within comment [-Wcomment] /* work on a copy of x */ masvd.c:165:2: warning: "/*" within comment [-Wcomment] /* ask for optimal size of work array */ masvd.c:189:2: warning: "/*" within comment [-Wcomment] /* ask for optimal size of work array */ "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c shift.c -o shift.o shift.c: In function 'shift': shift.c:27:13: warning: unused variable 'k' [-Wunused-variable] int i, j, k; ^ "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c util.c -o util.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o maanova.dll tmp.def makeratio.o masvd.o shift.o util.o -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lRlapack -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/maanova.buildbin-libdir/00LOCK-maanova/00new/maanova/libs/i386 ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'maanova' finding HTML links ... done PairContrast html Rmaanova.version html abf1 html adjPval html arrayview html consensus html dyeswapfilter html fill.missing html fitmaanova html fom html geneprofile html gridcheck html kidney html maanova-internal html macluster html matest html read.madata html resiplot html riplot html subset.madata html summarytable html transform.madata html varplot html volcano html write.madata html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'maanova' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c makeratio.c -o makeratio.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c masvd.c -o masvd.o masvd.c:114:2: warning: "/*" within comment [-Wcomment] /* work on a copy of x */ masvd.c:154:1: warning: "/*" within comment [-Wcomment] /*#ifndef IEEE_754 masvd.c:161:5: warning: "/*" within comment [-Wcomment] /* work on a copy of x */ masvd.c:165:2: warning: "/*" within comment [-Wcomment] /* ask for optimal size of work array */ masvd.c:189:2: warning: "/*" within comment [-Wcomment] /* ask for optimal size of work array */ "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c shift.c -o shift.o shift.c: In function 'shift': shift.c:27:13: warning: unused variable 'k' [-Wunused-variable] int i, j, k; ^ "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c util.c -o util.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o maanova.dll tmp.def makeratio.o masvd.o shift.o util.o -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lRlapack -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/maanova.buildbin-libdir/maanova/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'maanova' as maanova_1.64.0.zip * DONE (maanova) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'maanova' successfully unpacked and MD5 sums checked