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### Running command:
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###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:hipathia.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings hipathia_2.10.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/hipathia.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'hipathia/DESCRIPTION' ... OK
* this is package 'hipathia' version '2.10.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'hipathia' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  9.9Mb
  sub-directories of 1Mb or more:
    data      4.9Mb
    extdata   4.3Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
quantify_terms           46.65   1.96   51.81
create_report            30.42   2.61   42.03
get_pathways_annotations 30.62   0.92   38.20
hipathia                 25.65   0.72   27.11
get_node_names           25.07   0.79   26.37
get_path_names           24.44   0.54   25.67
load_pathways            22.89   0.42   25.08
get_pathways_list        21.69   0.43   22.81
node_color               21.59   0.50   22.77
get_pathways_summary     21.31   0.67   22.68
normalize_paths          20.39   0.85   21.94
save_results             20.75   0.43   21.97
node_color_per_de        20.58   0.45   21.77
pathway_comparison_plot  19.88   0.40   20.94
visualize_report         19.84   0.34   20.86
normalize_data           16.00   0.47   25.51
translate_data           13.48   0.47   14.66
get_go_names              8.98   1.10   11.31
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
quantify_terms           43.94   1.60   47.90
get_pathways_annotations 27.88   0.88   30.13
create_report            27.45   0.80   32.05
hipathia                 23.77   0.41   24.90
get_pathways_summary     23.19   0.44   24.31
node_color_per_de        22.31   0.52   23.54
get_pathways_list        21.89   0.37   22.80
normalize_paths          21.60   0.55   22.87
get_node_names           21.45   0.56   22.59
visualize_report         21.15   0.53   22.39
pathway_comparison_plot  20.55   0.40   21.63
node_color               19.94   0.51   21.17
load_pathways            19.66   0.36   20.66
save_results             18.57   0.33   20.92
get_path_names           17.50   0.53   18.85
normalize_data           12.80   0.53   13.96
translate_data           12.22   0.38   13.26
get_go_names              8.17   0.71    9.60
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.14-bioc/meat/hipathia.Rcheck/00check.log'
for details.