############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ggtree_3.2.1.tar.gz && rm -rf ggtree.buildbin-libdir && mkdir ggtree.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ggtree.buildbin-libdir ggtree_3.2.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ggtree_3.2.1.zip && rm ggtree_3.2.1.tar.gz ggtree_3.2.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 309k 100 309k 0 0 473k 0 --:--:-- --:--:-- --:--:-- 474k install for i386 * installing *source* package 'ggtree' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ggtree' finding HTML links ... done Date2decimal html add_TREEINFO html add_colorbar html applyLayoutDaylight html as.polytomy html attacher html collapse html decimal2Date html expand html facet-plot html facet_data html facet_labeller html facet_widths html flip html geom-hilight html geom_aline html geom_balance html geom_cladelab html geom_cladelabel html geom_cladelabel2 html geom_label2 html geom_motif html geom_nodelab html geom_nodelab2 html geom_nodepoint html geom_point2 html geom_range html geom_rootedge html geom_rootpoint html geom_segment2 html geom_strip html geom_taxalink html geom_text2 html geom_tiplab html geom_tiplab2 html geom_tippoint html geom_tree html geom_tree2 html geom_treescale html geom_zoom_clade html get.path html getNodeAngle.df html getNodesBreadthFirst.df html getSubtree html getSubtree.df html getSubtreeUnrooted html getSubtreeUnrooted.df html getTreeArcAngles html get_clade_position html get_heatmap_column_position html get_taxa_name html ggdensitree html ggexpand html ggtree-format-painter html ggtree-ggproto html ggtree html gheatmap html gzoom-methods html gzoom.phylo html identify html inset html label_pad html layoutDaylight html layoutEqualAngle html msaplot html multiplot html nodebar html nodepie html open_tree html range_format html reexports html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/ggtree.buildbin-libdir/00LOCK-ggtree/00new/ggtree/help/collapse.html revts html rotate html rotateTreePoints html rotate_tree html scaleClade html scale_color-methods html scale_x_ggtree html scale_x_range html set_hilight_legend html td_filter html td_mutate html td_unnest html theme_dendrogram html theme_inset html theme_tree html theme_tree2 html tree-layout html viewClade html xlim_expand html xlim_tree html zoomClade html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'ggtree' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'ggtree' as ggtree_3.2.1.zip * DONE (ggtree) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'ggtree' successfully unpacked and MD5 sums checked