############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch gaggle ### ############################################################################## ############################################################################## * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' * installing *source* package 'gaggle' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'gaggle' finding HTML links ... done broadcast html connectToGaggle html disconnectFromGaggle html gaggleInit html geese html getCluster html getJavaClassName html getMatrix html getNameList html getNetwork html getSpecies html getTargetGoose html getTuple html hideGoose html newTuple html setSpecies html setTargetGoose html showGoose html testGagglePackage html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location onLoad -- libname: C:/Users/biocbuild/bbs-3.14-bioc/R/library/00LOCK-gaggle/00new pkgname: gaggle path to jar: C:/Users/biocbuild/bbs-3.14-bioc/R/library/00LOCK-gaggle/00new/gaggle/jars/gaggleRShell.jar script: gaggle.R $Revision: 4499 $ $Date: 2010-08-10 17:15:03 -0700 (Tue, 10 Aug 2010) $ os version: Windows Server 2012 R2 jvm version: 1.8.0_111 You are using the wrong version of Java. Please see http://gaggle.systemsbiology.org/docs/html/java ** testing if installed package can be loaded from final location onLoad -- libname: C:/Users/biocbuild/bbs-3.14-bioc/R/library pkgname: gaggle path to jar: C:/Users/biocbuild/bbs-3.14-bioc/R/library/gaggle/jars/gaggleRShell.jar script: gaggle.R $Revision: 4499 $ $Date: 2010-08-10 17:15:03 -0700 (Tue, 10 Aug 2010) $ os version: Windows Server 2012 R2 jvm version: 1.8.0_111 You are using the wrong version of Java. Please see http://gaggle.systemsbiology.org/docs/html/java ** testing if installed package keeps a record of temporary installation path * DONE (gaggle) Making 'packages.html' ... done