############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/compcodeR_1.30.0.tar.gz && rm -rf compcodeR.buildbin-libdir && mkdir compcodeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=compcodeR.buildbin-libdir compcodeR_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL compcodeR_1.30.0.zip && rm compcodeR_1.30.0.tar.gz compcodeR_1.30.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 19 2346k 19 455k 0 0 1217k 0 0:00:01 --:--:-- 0:00:01 1219k 100 2346k 100 2346k 0 0 2093k 0 0:00:01 0:00:01 --:--:-- 2095k install for i386 * installing *source* package 'compcodeR' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'compcodeR' finding HTML links ... done DESeq2.createRmd html DSS.createRmd html EBSeq.createRmd html NBPSeq.createRmd html NOISeq.prenorm.createRmd html TCC.createRmd html baySeq.createRmd html checkDataObject html checkTableConsistency html check_compData html check_compData_results html compData-class html compData html compcodeR-package html convertListTocompData html convertcompDataToList html edgeR.GLM.createRmd html edgeR.exact.createRmd html generateCodeHTMLs html generateSyntheticData html listcreateRmd html logcpm.limma.createRmd html runComparison html runComparisonGUI html runDiffExp html show-compData-method html sqrtcpm.limma.createRmd html summarizeSyntheticDataSet html ttest.createRmd html voom.limma.createRmd html voom.ttest.createRmd html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'compcodeR' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'compcodeR' as compcodeR_1.30.0.zip * DONE (compcodeR) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'compcodeR' successfully unpacked and MD5 sums checked