############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/SeqVarTools_1.32.0.tar.gz && rm -rf SeqVarTools.buildbin-libdir && mkdir SeqVarTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SeqVarTools.buildbin-libdir SeqVarTools_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL SeqVarTools_1.32.0.zip && rm SeqVarTools_1.32.0.tar.gz SeqVarTools_1.32.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 69 529k 69 368k 0 0 1205k 0 --:--:-- --:--:-- --:--:-- 1205k 100 529k 100 529k 0 0 726k 0 --:--:-- --:--:-- --:--:-- 725k install for i386 * installing *source* package 'SeqVarTools' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'SeqVarTools' finding HTML links ... done Iterator-class html finding level-2 HTML links ... done SeqVarData-class html SeqVarTools-package html allele-methods html alleleFrequency html alternateAlleleDetection html applyMethod html chromWithPAR html countSingletons html duplicateDiscordance html getGenotype html getVariableLengthData html heterozygosity html hwe html imputedDosage html inbreedCoeff html isSNV html isVariant html meanBySample html mendelErr html missingGenotypeRate html pca html pedigree html refFrac html regression html setVariantID html titv html variantInfo html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'SeqVarTools' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'SeqVarTools' as SeqVarTools_1.32.0.zip * DONE (SeqVarTools) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'SeqVarTools' successfully unpacked and MD5 sums checked