############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/SMITE_1.22.0.tar.gz && rm -rf SMITE.buildbin-libdir && mkdir SMITE.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SMITE.buildbin-libdir SMITE_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL SMITE_1.22.0.zip && rm SMITE_1.22.0.tar.gz SMITE_1.22.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 10 2952k 10 312k 0 0 831k 0 0:00:03 --:--:-- 0:00:03 830k 64 2952k 64 1902k 0 0 1408k 0 0:00:02 0:00:01 0:00:01 1409k 100 2952k 100 2952k 0 0 1633k 0 0:00:01 0:00:01 --:--:-- 1632k install for i386 * installing *source* package 'SMITE' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'SMITE' finding HTML links ... done Reactome.Symbol.Igraph html SMITE-package html addShadowText html annotateExpression html annotateModification html convertGeneIds html curated_expression html extractExpression html extractGOseq html extractModification html extractModules html extractScores html genes_for_conversiontest html hg19_gene_bed html highScores html histone_h3k4me1 html makePvalueAnnotation html makePvalueObject html methylationdata html normalizePval html plotCompareScores html plotDensityPval html plotModule html removeModification html runBioNet html runGOseq html runSpinglass html scorePval html stoufferTest html test_annotation_score_data html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'SMITE' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'SMITE' as SMITE_1.22.0.zip * DONE (SMITE) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'SMITE' successfully unpacked and MD5 sums checked