############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf RMassBank.buildbin-libdir && mkdir RMassBank.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch --build --library=RMassBank.buildbin-libdir RMassBank_3.4.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'RMassBank' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'RMassBank' finding HTML links ... done CTS.externalIdSubset html CTS.externalIdTypes html RmbDefaultSettings html RmbSettings html add.formula html addMB html addPeaks html addPeaksManually html addProperty html aggregateSpectra html analyzeMsMs html annotator.default html archiveResults html checkIsotopes html checkSpectra html cleanElnoise html combineMultiplicities html createMolfile html dbe html deprofile html dot-buildRecord.RmbSpectraSet html dot-parseTitleString html finding level-2 HTML links ... done Rd warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpygmhqQ/R.INSTALLbcc4526b2802/RMassBank/man/dot-parseTitleString.Rd:38: missing link 'compileRecord' dot-updateObject.RmbSpectrum2.formulaSource html exportMassbank html Rd warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpygmhqQ/R.INSTALLbcc4526b2802/RMassBank/man/exportMassbank.Rd:11: missing link 'compileRecord' Rd warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpygmhqQ/R.INSTALLbcc4526b2802/RMassBank/man/exportMassbank.Rd:52: missing link 'compileRecord' fillback html filterLowaccResults html filterMultiplicity html filterPeakSatellites html filterPeaksMultiplicity html findEIC html findMass html findMsMsHR html findMsMsHR.direct html findMsMsHR.ticms2 html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/RMassBank.buildbin-libdir/00LOCK-RMassBank/00new/RMassBank/help/findMsMsHR.ticMS2.html findMsMsHRperxcms html findMz html findMz.formula html findProgress html flatten html formulastring.to.list html gatherData html gatherDataBabel html gatherDataUnknown html gatherPubChem html getAnalyticalInfo html Rd warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpygmhqQ/R.INSTALLbcc4526b2802/RMassBank/man/getAnalyticalInfo.Rd:71: missing link 'compileRecord' getCSID html getCactus html getCompTox html getCtsKey html getCtsRecord html getData html getMolecule html getPcId html is.valid.formula html loadInfolists html loadList html makeMollist html makePeaksCache html makeRecalibration html mbWorkflow html mbWorkspace-class html mergePeaks.df html msmsRead.RAW html msmsRead html msmsWorkflow html msmsWorkspace-class html newMbWorkspace html newMsmsWorkspace html order.formula html parseMassBank html parseMbRecord html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/RMassBank.buildbin-libdir/00LOCK-RMassBank/00new/RMassBank/help/parseMassBank.html peaksMatched html peaksUnmatched html plotMbWorkspaces html plotRecalibration html ppm html problematicPeaks html processProblematicPeaks html progressBarHook html reanalyzeFailpeaks html recalibrate html recalibrate.addMS1data html rmb_log_debug html rmb_log_error html rmb_log_fatal html rmb_log_info html rmb_log_success html rmb_log_trace html rmb_log_warn html selectPeaks html selectSpectra html setData html smiles2mass html spectraCount html to.limits.rcdk html toMassbank html Rd warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpygmhqQ/R.INSTALLbcc4526b2802/RMassBank/man/toMassbank.Rd:79: missing link 'compileRecord' toRMB html updateSettings html validate html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'RMassBank' as RMassBank_3.4.0.zip * DONE (RMassBank)