Back to Multiple platform build/check report for BioC 3.14
ABCDEFGHIJKLM[N]OPQRSTUVWXYZ

This page was generated on 2022-04-13 12:07:01 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for NxtIRFcore on tokay2


To the developers/maintainers of the NxtIRFcore package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/NxtIRFcore.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1312/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
NxtIRFcore 1.0.0  (landing page)
Alex Chit Hei Wong
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/NxtIRFcore
git_branch: RELEASE_3_14
git_last_commit: 933ccae
git_last_commit_date: 2021-10-26 13:13:51 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: NxtIRFcore
Version: 1.0.0
Command: rm -rf NxtIRFcore.buildbin-libdir && mkdir NxtIRFcore.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=NxtIRFcore.buildbin-libdir NxtIRFcore_1.0.0.tar.gz
StartedAt: 2022-04-13 06:43:54 -0400 (Wed, 13 Apr 2022)
EndedAt: 2022-04-13 06:46:55 -0400 (Wed, 13 Apr 2022)
EllapsedTime: 181.4 seconds
RetCode: 0
Status:   OK  
PackageFile: NxtIRFcore_1.0.0.zip
PackageFileSize: 3.878 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf NxtIRFcore.buildbin-libdir && mkdir NxtIRFcore.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=NxtIRFcore.buildbin-libdir NxtIRFcore_1.0.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'NxtIRFcore' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BAM2blocks.cpp -o BAM2blocks.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c FastaReader.cpp -o FastaReader.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c FragmentBlocks.cpp -o FragmentBlocks.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c GZTools.cpp -o GZTools.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c IRFinder.cpp -o IRFinder.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ReadBlockProcessor.cpp -o ReadBlockProcessor.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ReadBlockProcessor_CoverageBlocks.cpp -o ReadBlockProcessor_CoverageBlocks.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c covTools.cpp -o covTools.o
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o NxtIRFcore.dll tmp.def BAM2blocks.o FastaReader.o FragmentBlocks.o GZTools.o IRFinder.o RcppExports.o ReadBlockProcessor.o ReadBlockProcessor_CoverageBlocks.o covTools.o -fopenmp -DRNXTIRF -LC:/Users/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/NxtIRFcore.buildbin-libdir/00LOCK-NxtIRFcore/00new/NxtIRFcore/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'NxtIRFcore'
    finding HTML links ... done
    ASE-methods                             html  
    BuildReference                          html  
    CollateData                             html  
    CoordToGR                               html  
    Coverage                                html  
    Find_Samples                            html  
    IRFinder                                html  
    IsCOV                                   html  
    MakeSE                                  html  
    Mappability-methods                     html  
    NxtFilter-class                         html  
    NxtIRFcore-package                      html  
    NxtSE-class                             html  
    finding level-2 HTML links ... done

    Plot_Coverage                           html  
    Run_NxtIRF_Filters                      html  
    STAR-methods                            html  
    example-NxtIRF-data                     html  
    make_plot_data                          html  
    theme_white                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'NxtIRFcore' ...
** libs
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BAM2blocks.cpp -o BAM2blocks.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c FastaReader.cpp -o FastaReader.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c FragmentBlocks.cpp -o FragmentBlocks.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c GZTools.cpp -o GZTools.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c IRFinder.cpp -o IRFinder.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ReadBlockProcessor.cpp -o ReadBlockProcessor.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ReadBlockProcessor_CoverageBlocks.cpp -o ReadBlockProcessor_CoverageBlocks.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c covTools.cpp -o covTools.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o NxtIRFcore.dll tmp.def BAM2blocks.o FastaReader.o FragmentBlocks.o GZTools.o IRFinder.o RcppExports.o ReadBlockProcessor.o ReadBlockProcessor_CoverageBlocks.o covTools.o -fopenmp -DRNXTIRF -LC:/Users/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/NxtIRFcore.buildbin-libdir/NxtIRFcore/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'NxtIRFcore' as NxtIRFcore_1.0.0.zip
* DONE (NxtIRFcore)