############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MesKit_1.4.0.tar.gz && rm -rf MesKit.buildbin-libdir && mkdir MesKit.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MesKit.buildbin-libdir MesKit_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MesKit_1.4.0.zip && rm MesKit_1.4.0.tar.gz MesKit_1.4.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 51 1801k 51 925k 0 0 1170k 0 0:00:01 --:--:-- 0:00:01 1171k 100 1801k 100 1801k 0 0 1451k 0 0:00:01 0:00:01 --:--:-- 1452k install for i386 * installing *source* package 'MesKit' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'ape::degree' by 'circlize::degree' when loading 'MesKit' ** help *** installing help indices converting help for package 'MesKit' finding HTML links ... done Maf-class html MafList-class html calFst html calJSI html calNeiDist html ccfAUC html classifyMut html cna2gene html compareCCF html compareTree html fitSignatures html getBinaryMatrix html getBootstrapValue html getBranchType html getCCFMatrix html getMafData html getMafPatient html getMafRef html getMutBranches html getNonSyn_vc html getPhyloTree html getPhyloTreePatient html getPhyloTreeRef html getPhyloTreeTsbLabel html getSampleInfo html getTree html getTreeMethod html mathScore html mutCluster html mutHeatmap html mutTrunkBranch html phyloTree-class html phyloTreeList-class html plotCNA html plotMutProfile html plotMutSigProfile html plotPhyloTree html readMaf html readSegment html runMesKit html subMaf html testNeutral html triMatrix html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'ape::degree' by 'circlize::degree' when loading 'MesKit' ** testing if installed package can be loaded from final location Warning: replacing previous import 'ape::degree' by 'circlize::degree' when loading 'MesKit' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'MesKit' ... ** testing if installed package can be loaded Warning: replacing previous import 'ape::degree' by 'circlize::degree' when loading 'MesKit' * MD5 sums packaged installation of 'MesKit' as MesKit_1.4.0.zip * DONE (MesKit) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'MesKit' successfully unpacked and MD5 sums checked